Wall clock time and date at job start Mon Mar 30 2020 04:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47195 * 2 1 4 4 H 1.08998 * 109.46890 * 61.62692 * 3 2 1 5 5 N 1.46897 * 109.47255 * 301.62457 * 3 2 1 6 6 C 1.53002 * 109.46887 * 181.62838 * 3 2 1 7 7 H 1.09004 * 109.47230 * 57.94347 * 6 3 2 8 8 C 1.50703 * 109.47036 * 177.94490 * 6 3 2 9 9 C 1.39869 * 126.04057 * 74.43327 * 8 6 3 10 10 N 1.30832 * 108.20271 * 180.23317 * 9 8 6 11 11 N 1.40089 * 108.20443 * 359.78304 * 10 9 8 12 12 C 1.46505 * 126.03844 * 180.02562 * 11 10 9 13 13 C 1.34945 * 107.92396 * 359.97438 * 11 10 9 14 14 N 1.46905 * 109.46963 * 297.94194 * 6 3 2 15 15 C 1.46890 * 111.00111 * 327.25436 * 14 6 3 16 16 C 1.46898 * 110.99562 * 91.21111 * 14 6 3 17 17 C 1.50702 * 109.46953 * 163.77633 * 16 14 6 18 18 H 1.08003 * 119.99800 * 359.97438 * 17 16 14 19 19 C 1.37875 * 120.00469 * 180.02562 * 17 16 14 20 20 N 1.31517 * 119.99622 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00358 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47238 * 89.99619 * 21 19 17 23 23 H 1.48505 * 109.47282 * 209.99819 * 21 19 17 24 24 H 1.48500 * 109.47010 * 329.99931 * 21 19 17 25 25 H 1.09000 * 109.46987 * 299.99945 * 1 2 3 26 26 H 1.09006 * 109.47023 * 59.99998 * 1 2 3 27 27 H 1.08995 * 109.47187 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46987 * 240.00055 * 2 1 3 29 29 H 1.09000 * 109.47205 * 120.00397 * 2 1 3 30 30 H 1.00891 * 111.00435 * 179.97438 * 5 3 2 31 31 H 1.00908 * 111.00191 * 303.96132 * 5 3 2 32 32 H 1.08001 * 125.89770 * 0.02562 * 9 8 6 33 33 H 1.08991 * 109.47253 * 269.97785 * 12 11 10 34 34 H 1.09004 * 109.46550 * 29.97243 * 12 11 10 35 35 H 1.08997 * 109.47220 * 149.96941 * 12 11 10 36 36 H 1.08000 * 126.12285 * 179.97438 * 13 11 10 37 37 H 1.09006 * 109.47108 * 71.82488 * 15 14 6 38 38 H 1.09002 * 109.47254 * 191.82327 * 15 14 6 39 39 H 1.09002 * 109.47283 * 311.82690 * 15 14 6 40 40 H 1.09002 * 109.47189 * 283.77170 * 16 14 6 41 41 H 1.08994 * 109.47468 * 43.77750 * 16 14 6 42 42 H 0.96998 * 120.00126 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7007 1.9478 0.9042 5 7 1.5186 2.1462 -1.1793 6 6 3.5695 1.4426 -0.0410 7 1 3.9093 0.9054 -0.9265 8 6 4.0705 2.8630 -0.0919 9 6 4.0872 3.7685 0.9740 10 7 4.5876 4.8979 0.5430 11 7 4.9104 4.7450 -0.8116 12 6 5.4968 5.7698 -1.6789 13 6 4.5869 3.4866 -1.1761 14 7 4.0916 0.7821 1.1628 15 6 3.2102 1.0139 2.3148 16 6 4.2884 -0.6551 0.9312 17 6 5.1759 -1.2209 2.0098 18 1 5.5562 -0.5770 2.7891 19 6 5.5034 -2.5601 2.0012 20 7 5.0408 -3.3441 1.0519 21 14 6.6041 -3.2612 3.3377 22 1 5.7684 -3.7276 4.4732 23 1 7.3796 -4.4039 2.7916 24 1 7.5395 -2.2093 3.8109 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.8411 3.1019 -1.2020 31 1 1.7654 1.6606 -2.0287 32 1 3.7429 3.5707 1.9784 33 1 4.7005 6.3421 -2.1546 34 1 6.1182 6.4380 -1.0828 35 1 6.1079 5.2917 -2.4444 36 1 4.7128 3.0561 -2.1585 37 1 2.2922 0.4392 2.1913 38 1 3.7155 0.6997 3.2280 39 1 2.9687 2.0749 2.3798 40 1 3.3235 -1.1619 0.9518 41 1 4.7572 -0.8057 -0.0411 42 1 5.2714 -4.2862 1.0456 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043126741.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:21 Heat of formation + Delta-G solvation = 94.477605 kcal Electronic energy + Delta-G solvation = -21328.401479 eV Core-core repulsion = 18345.806069 eV Total energy + Delta-G solvation = -2982.595410 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.09290 -38.46440 -34.37382 -33.20916 -32.32031 -31.30199 -29.84494 -27.90983 -26.89001 -25.98919 -24.72406 -23.09884 -20.95974 -20.55036 -20.16606 -19.14259 -16.68140 -16.35977 -15.88287 -15.37059 -14.85860 -14.59275 -14.57177 -14.25534 -13.78373 -13.27614 -12.87963 -12.86077 -12.57555 -12.50655 -12.39237 -12.20546 -11.88823 -11.32731 -11.15748 -10.93285 -10.85984 -10.64253 -10.53282 -10.36651 -10.16823 -10.04555 -9.82746 -9.19603 -9.18553 -8.71143 -8.37890 -8.05717 -6.95757 -5.98667 -3.99075 2.07508 2.68412 3.09010 3.33797 3.40135 3.45063 4.45207 4.57450 4.89733 4.96485 5.06016 5.11442 5.24903 5.29354 5.36800 5.40347 5.47729 5.58757 5.74331 5.81709 5.96405 6.05176 6.08566 6.15789 6.32582 6.34882 6.47233 6.52293 6.68729 6.71511 6.85162 6.92974 7.17402 7.26770 7.42357 7.46258 7.71282 7.86083 7.92951 8.15121 8.26326 8.60899 9.08868 9.64688 11.11293 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.017084 B = 0.006079 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.586628 B = 4605.208664 C = 5652.475360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 C 0.073 3.927 4 H 0.081 0.919 5 N -0.838 5.838 6 C 0.124 3.876 7 H 0.072 0.928 8 C -0.199 4.199 9 C 0.068 3.932 10 N -0.307 5.307 11 N -0.383 5.383 12 C 0.106 3.894 13 C 0.043 3.957 14 N -0.525 5.525 15 C 0.027 3.973 16 C 0.187 3.813 17 C -0.502 4.502 18 H 0.061 0.939 19 C 0.055 3.945 20 N -0.900 5.900 21 Si 0.895 3.105 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.274 1.274 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.335 0.665 31 H 0.332 0.668 32 H 0.180 0.820 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.166 0.834 37 H 0.028 0.972 38 H 0.066 0.934 39 H 0.045 0.955 40 H 0.008 0.992 41 H 0.024 0.976 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.480 13.418 -6.447 15.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C -0.040 4.040 4 H 0.099 0.901 5 N -0.366 5.366 6 C 0.011 3.989 7 H 0.090 0.910 8 C -0.211 4.211 9 C -0.118 4.118 10 N -0.128 5.128 11 N -0.166 5.166 12 C -0.036 4.036 13 C -0.102 4.102 14 N -0.248 5.248 15 C -0.121 4.121 16 C 0.062 3.938 17 C -0.541 4.541 18 H 0.080 0.920 19 C -0.146 4.146 20 N -0.540 5.540 21 Si 0.723 3.277 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.199 1.199 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.148 0.852 31 H 0.143 0.857 32 H 0.197 0.803 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.183 0.817 37 H 0.046 0.954 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.026 0.974 41 H 0.042 0.958 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.342 14.599 -5.879 16.326 hybrid contribution 0.869 -1.624 -0.083 1.843 sum -3.473 12.976 -5.962 14.696 Atomic orbital electron populations 1.21607 0.95878 1.00261 1.01730 1.22026 0.96069 0.95311 1.03585 1.22201 0.92589 0.95014 0.94149 0.90069 1.59007 1.66523 1.06193 1.04886 1.20821 0.92796 0.89613 0.95629 0.90997 1.20111 1.10445 0.97823 0.92713 1.23804 0.98053 0.89992 0.99924 1.77310 1.21644 1.23609 0.90257 1.48330 1.49842 1.10107 1.08343 1.21738 0.98433 0.90490 0.92901 1.22198 1.01644 0.86073 1.00324 1.62141 1.45269 1.15756 1.01683 1.22478 0.95508 0.98484 0.95611 1.20012 0.96119 0.80405 0.97247 1.21193 1.29216 0.93162 1.10533 0.92038 1.24958 0.96484 0.97085 0.96080 1.69950 1.45640 1.05394 1.33030 0.86549 0.80711 0.78580 0.81879 1.20784 1.21387 1.19890 0.93619 0.92161 0.93821 0.92383 0.89221 0.85228 0.85656 0.80304 0.91241 0.89677 0.89876 0.81663 0.95413 0.91506 0.93630 0.97408 0.95821 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.74 37.16 0.36 -1.63 16 2 C -0.13 -2.18 4.17 -26.73 -0.11 -2.29 16 3 C 0.07 1.11 1.92 -67.71 -0.13 0.97 16 4 H 0.08 1.28 6.17 -51.93 -0.32 0.96 16 5 N -0.84 -10.83 8.36 -4.67 -0.04 -10.87 16 6 C 0.12 2.09 2.15 -68.86 -0.15 1.94 16 7 H 0.07 1.29 7.42 -51.93 -0.39 0.91 16 8 C -0.20 -3.08 3.93 -105.05 -0.41 -3.49 16 9 C 0.07 1.09 11.13 -17.37 -0.19 0.90 16 10 N -0.31 -4.87 12.58 30.62 0.39 -4.48 16 11 N -0.38 -5.04 4.01 -68.16 -0.27 -5.32 16 12 C 0.11 0.88 11.47 59.85 0.69 1.57 16 13 C 0.04 0.58 11.16 -17.23 -0.19 0.38 16 14 N -0.53 -10.73 4.43 -237.73 -1.05 -11.78 16 15 C 0.03 0.50 7.72 60.06 0.46 0.97 16 16 C 0.19 4.63 4.14 -4.98 -0.02 4.61 16 17 C -0.50 -13.90 8.71 -34.44 -0.30 -14.20 16 18 H 0.06 1.72 7.52 -52.48 -0.39 1.32 16 19 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 21 Si 0.89 21.69 29.54 -169.99 -5.02 16.66 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.84 7.56 -51.93 -0.39 0.45 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.09 1.72 3.51 -51.93 -0.18 1.54 16 30 H 0.34 4.22 7.75 -39.30 -0.30 3.92 16 31 H 0.33 4.00 8.98 -39.29 -0.35 3.65 16 32 H 0.18 2.71 5.97 -52.49 -0.31 2.40 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.17 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.03 0.51 5.04 -51.93 -0.26 0.24 16 38 H 0.07 1.32 7.52 -51.93 -0.39 0.93 16 39 H 0.05 0.72 4.61 -51.93 -0.24 0.48 16 40 H 0.01 0.21 5.13 -51.93 -0.27 -0.05 16 41 H 0.02 0.64 7.60 -51.93 -0.39 0.25 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 325.24 15.07 4.90 4.90 Total: -1.00 -31.03 325.24 -6.75 -37.78 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -6.29 Total: 7.53 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -0.09 Total: -8.83 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.24 Total: -58.04 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.03 -6.75 -37.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043126741.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.254 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds