Wall clock time and date at job start Mon Mar 30 2020 04:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47195 * 2 1 4 4 H 1.08998 * 109.46890 * 61.62692 * 3 2 1 5 5 N 1.46897 * 109.47255 * 301.62457 * 3 2 1 6 6 C 1.53002 * 109.46887 * 181.62838 * 3 2 1 7 7 H 1.09004 * 109.47230 * 57.94347 * 6 3 2 8 8 C 1.50703 * 109.47036 * 177.94490 * 6 3 2 9 9 C 1.39869 * 126.04057 * 74.43327 * 8 6 3 10 10 N 1.30832 * 108.20271 * 180.23317 * 9 8 6 11 11 N 1.40089 * 108.20443 * 359.78304 * 10 9 8 12 12 C 1.46505 * 126.03844 * 180.02562 * 11 10 9 13 13 C 1.34945 * 107.92396 * 359.97438 * 11 10 9 14 14 N 1.46905 * 109.46963 * 297.94194 * 6 3 2 15 15 C 1.46890 * 111.00111 * 327.25436 * 14 6 3 16 16 C 1.46898 * 110.99562 * 91.21111 * 14 6 3 17 17 C 1.50702 * 109.46953 * 163.77633 * 16 14 6 18 18 H 1.08003 * 119.99800 * 359.97438 * 17 16 14 19 19 C 1.37875 * 120.00469 * 180.02562 * 17 16 14 20 20 N 1.31517 * 119.99622 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00358 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47238 * 89.99619 * 21 19 17 23 23 H 1.48505 * 109.47282 * 209.99819 * 21 19 17 24 24 H 1.48500 * 109.47010 * 329.99931 * 21 19 17 25 25 H 1.09000 * 109.46987 * 299.99945 * 1 2 3 26 26 H 1.09006 * 109.47023 * 59.99998 * 1 2 3 27 27 H 1.08995 * 109.47187 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46987 * 240.00055 * 2 1 3 29 29 H 1.09000 * 109.47205 * 120.00397 * 2 1 3 30 30 H 1.00891 * 111.00435 * 179.97438 * 5 3 2 31 31 H 1.00908 * 111.00191 * 303.96132 * 5 3 2 32 32 H 1.08001 * 125.89770 * 0.02562 * 9 8 6 33 33 H 1.08991 * 109.47253 * 269.97785 * 12 11 10 34 34 H 1.09004 * 109.46550 * 29.97243 * 12 11 10 35 35 H 1.08997 * 109.47220 * 149.96941 * 12 11 10 36 36 H 1.08000 * 126.12285 * 179.97438 * 13 11 10 37 37 H 1.09006 * 109.47108 * 71.82488 * 15 14 6 38 38 H 1.09002 * 109.47254 * 191.82327 * 15 14 6 39 39 H 1.09002 * 109.47283 * 311.82690 * 15 14 6 40 40 H 1.09002 * 109.47189 * 283.77170 * 16 14 6 41 41 H 1.08994 * 109.47468 * 43.77750 * 16 14 6 42 42 H 0.96998 * 120.00126 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7007 1.9478 0.9042 5 7 1.5186 2.1462 -1.1793 6 6 3.5695 1.4426 -0.0410 7 1 3.9093 0.9054 -0.9265 8 6 4.0705 2.8630 -0.0919 9 6 4.0872 3.7685 0.9740 10 7 4.5876 4.8979 0.5430 11 7 4.9104 4.7450 -0.8116 12 6 5.4968 5.7698 -1.6789 13 6 4.5869 3.4866 -1.1761 14 7 4.0916 0.7821 1.1628 15 6 3.2102 1.0139 2.3148 16 6 4.2884 -0.6551 0.9312 17 6 5.1759 -1.2209 2.0098 18 1 5.5562 -0.5770 2.7891 19 6 5.5034 -2.5601 2.0012 20 7 5.0408 -3.3441 1.0519 21 14 6.6041 -3.2612 3.3377 22 1 5.7684 -3.7276 4.4732 23 1 7.3796 -4.4039 2.7916 24 1 7.5395 -2.2093 3.8109 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.8411 3.1019 -1.2020 31 1 1.7654 1.6606 -2.0287 32 1 3.7429 3.5707 1.9784 33 1 4.7005 6.3421 -2.1546 34 1 6.1182 6.4380 -1.0828 35 1 6.1079 5.2917 -2.4444 36 1 4.7128 3.0561 -2.1585 37 1 2.2922 0.4392 2.1913 38 1 3.7155 0.6997 3.2280 39 1 2.9687 2.0749 2.3798 40 1 3.3235 -1.1619 0.9518 41 1 4.7572 -0.8057 -0.0411 42 1 5.2714 -4.2862 1.0456 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043126741.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:21 Heat of formation + Delta-G solvation = 71.516699 kcal Electronic energy + Delta-G solvation = -21329.397139 eV Core-core repulsion = 18345.806069 eV Total energy + Delta-G solvation = -2983.591070 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.22425 -39.86327 -35.93452 -34.53925 -33.96716 -32.53914 -31.01527 -29.55502 -28.27272 -27.17984 -26.26112 -24.66047 -22.27657 -21.93994 -21.39157 -20.42875 -18.49706 -17.54990 -17.31070 -16.71815 -16.43786 -15.97087 -15.86173 -15.50703 -15.20090 -14.62704 -14.29256 -14.00777 -13.82369 -13.79241 -13.56640 -13.40229 -13.28614 -12.95590 -12.68013 -12.64878 -12.44777 -12.26527 -12.13904 -11.86023 -11.67569 -11.50413 -11.43468 -11.06352 -10.55709 -10.26738 -9.88821 -9.23085 -8.55137 -8.11874 -6.22056 0.99866 1.41594 1.42108 1.53459 1.76537 1.89037 2.43546 3.17719 3.42303 3.69077 3.89073 3.95845 4.06755 4.18765 4.27769 4.33621 4.42881 4.49362 4.59947 4.64501 4.72670 4.77332 4.83277 4.87493 4.94639 5.04817 5.13666 5.19065 5.28880 5.37411 5.38986 5.46194 5.60234 5.73272 5.74681 6.15243 6.21225 6.29134 6.48063 6.68559 6.76143 6.84272 6.95059 7.46679 8.95372 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.017084 B = 0.006079 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.586628 B = 4605.208664 C = 5652.475360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.129 4.129 3 C 0.090 3.910 4 H 0.078 0.922 5 N -0.827 5.827 6 C 0.132 3.868 7 H 0.057 0.943 8 C -0.223 4.223 9 C 0.055 3.945 10 N -0.331 5.331 11 N -0.377 5.377 12 C 0.095 3.905 13 C 0.057 3.943 14 N -0.535 5.535 15 C 0.033 3.967 16 C 0.205 3.795 17 C -0.519 4.519 18 H 0.054 0.946 19 C 0.005 3.995 20 N -0.932 5.932 21 Si 0.960 3.040 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.271 1.271 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.342 0.658 31 H 0.339 0.661 32 H 0.178 0.822 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.196 0.804 37 H 0.028 0.972 38 H 0.048 0.952 39 H 0.074 0.926 40 H -0.005 1.005 41 H -0.007 1.007 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.426 14.885 -7.127 17.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.167 4.167 3 C -0.024 4.024 4 H 0.096 0.904 5 N -0.356 5.356 6 C 0.020 3.980 7 H 0.075 0.925 8 C -0.235 4.235 9 C -0.130 4.130 10 N -0.153 5.153 11 N -0.159 5.159 12 C -0.045 4.045 13 C -0.090 4.090 14 N -0.258 5.258 15 C -0.115 4.115 16 C 0.079 3.921 17 C -0.557 4.557 18 H 0.072 0.928 19 C -0.193 4.193 20 N -0.573 5.573 21 Si 0.785 3.215 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.195 1.195 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.155 0.845 31 H 0.152 0.848 32 H 0.195 0.805 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.128 0.872 36 H 0.213 0.787 37 H 0.046 0.954 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.013 0.987 41 H 0.011 0.989 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.291 16.113 -6.563 17.920 hybrid contribution 0.874 -1.985 0.029 2.168 sum -3.418 14.128 -6.534 15.937 Atomic orbital electron populations 1.21539 0.94083 1.00594 1.02432 1.21910 0.97573 0.95814 1.01364 1.21916 0.91223 0.94190 0.95039 0.90351 1.58948 1.65906 1.06374 1.04369 1.20754 0.93953 0.90061 0.93272 0.92512 1.19952 1.12743 0.96948 0.93821 1.23824 0.98667 0.90347 1.00148 1.77253 1.22372 1.23710 0.91968 1.48712 1.48568 1.10849 1.07808 1.22162 0.99476 0.90023 0.92843 1.22598 0.99604 0.85930 1.00890 1.62025 1.46978 1.13037 1.03806 1.22436 0.94807 1.00204 0.94062 1.19625 0.94609 0.83122 0.94753 1.21516 1.29636 0.93558 1.11006 0.92774 1.25767 0.97827 0.97468 0.98231 1.70064 1.46840 1.05687 1.34682 0.85528 0.78905 0.77791 0.79243 1.19879 1.20870 1.19550 0.93085 0.91133 0.93754 0.93730 0.92288 0.84487 0.84828 0.80495 0.89138 0.89412 0.87240 0.78684 0.95416 0.93336 0.90788 0.98728 0.98876 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 9.74 71.98 0.70 -2.94 16 2 C -0.13 -4.29 4.17 30.59 0.13 -4.17 16 3 C 0.09 2.66 1.92 44.92 0.09 2.74 16 4 H 0.08 2.41 6.17 -2.39 -0.01 2.39 16 5 N -0.83 -19.93 8.36 -168.68 -1.41 -21.34 16 6 C 0.13 4.45 2.15 44.17 0.09 4.54 16 7 H 0.06 2.07 7.42 -2.39 -0.02 2.05 16 8 C -0.22 -6.65 3.93 -20.14 -0.08 -6.73 16 9 C 0.06 1.71 11.13 85.24 0.95 2.66 16 10 N -0.33 -10.00 12.58 -57.03 -0.72 -10.72 16 11 N -0.38 -8.96 4.01 -369.57 -1.48 -10.44 16 12 C 0.09 1.26 11.47 127.77 1.47 2.73 16 13 C 0.06 1.39 11.16 83.54 0.93 2.32 16 14 N -0.54 -22.37 4.43 -906.03 -4.01 -26.38 16 15 C 0.03 1.23 7.72 127.69 0.99 2.22 16 16 C 0.20 10.56 4.14 85.56 0.35 10.92 16 17 C -0.52 -29.45 8.71 25.60 0.22 -29.23 16 18 H 0.05 3.09 7.52 -2.91 -0.02 3.06 16 19 C 0.00 0.28 5.46 84.65 0.46 0.74 16 20 N -0.93 -55.64 13.29 21.45 0.28 -55.36 16 21 Si 0.96 44.88 29.54 68.60 2.03 46.90 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 1.84 7.56 -2.38 -0.02 1.82 16 27 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.06 2.35 3.51 -2.39 -0.01 2.34 16 30 H 0.34 7.82 7.75 -89.70 -0.69 7.12 16 31 H 0.34 7.57 8.98 -89.69 -0.81 6.76 16 32 H 0.18 5.31 5.97 -2.91 -0.02 5.29 16 33 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.20 3.45 8.06 -2.91 -0.02 3.42 16 37 H 0.03 1.04 5.04 -2.38 -0.01 1.02 16 38 H 0.05 1.96 7.52 -2.39 -0.02 1.94 16 39 H 0.07 2.32 4.61 -2.39 -0.01 2.31 16 40 H 0.00 -0.26 5.13 -2.39 -0.01 -0.27 16 41 H -0.01 -0.39 7.60 -2.39 -0.02 -0.41 16 42 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -67.72 325.24 0.53 -67.19 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: -0.46 Total: 24.34 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 6.30 Total: -14.19 kcal Atomic # 7 Polarization: -116.90 SS G_CDS: -7.34 Total: -124.24 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -67.72 0.53 -67.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043126741.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.703 kcal (2) G-P(sol) polarization free energy of solvation -67.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds