Wall clock time and date at job start Mon Mar 30 2020 04:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 N 1.46910 * 109.47127 * 65.00091 * 3 2 1 6 6 C 1.52997 * 109.47448 * 184.99813 * 3 2 1 7 7 H 1.09007 * 109.47177 * 175.00153 * 6 3 2 8 8 C 1.50694 * 109.47462 * 295.00293 * 6 3 2 9 9 C 1.39870 * 126.04239 * 80.02106 * 8 6 3 10 10 N 1.30836 * 108.20312 * 179.97438 * 9 8 6 11 11 N 1.40081 * 108.20588 * 0.02562 * 10 9 8 12 12 C 1.46506 * 126.03703 * 179.97438 * 11 10 9 13 13 C 1.34945 * 107.92928 * 359.75848 * 11 10 9 14 14 N 1.46902 * 109.47107 * 55.00539 * 6 3 2 15 15 C 1.46899 * 111.00033 * 183.95543 * 14 6 3 16 16 C 1.46897 * 111.00315 * 59.99727 * 14 6 3 17 17 C 1.50698 * 109.47117 * 190.00540 * 16 14 6 18 18 H 1.07999 * 120.00344 * 359.97438 * 17 16 14 19 19 C 1.37884 * 120.00033 * 179.97438 * 17 16 14 20 20 N 1.31516 * 119.99477 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00150 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47292 * 89.99952 * 21 19 17 23 23 H 1.48499 * 109.47044 * 210.00186 * 21 19 17 24 24 H 1.48503 * 109.46928 * 330.00019 * 21 19 17 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 1.00892 * 110.99957 * 60.00190 * 5 3 2 31 31 H 1.00899 * 110.99816 * 183.95423 * 5 3 2 32 32 H 1.08000 * 125.89807 * 359.96140 * 9 8 6 33 33 H 1.09003 * 109.46804 * 90.02128 * 12 11 10 34 34 H 1.08994 * 109.47328 * 210.02600 * 12 11 10 35 35 H 1.09004 * 109.46998 * 330.02808 * 12 11 10 36 36 H 1.07995 * 126.12988 * 180.24420 * 13 11 10 37 37 H 1.08999 * 109.47364 * 59.99919 * 15 14 6 38 38 H 1.09001 * 109.46748 * 179.97438 * 15 14 6 39 39 H 1.08999 * 109.46770 * 299.99153 * 15 14 6 40 40 H 1.09004 * 109.47006 * 310.00571 * 16 14 6 41 41 H 1.08993 * 109.47205 * 69.99949 * 16 14 6 42 42 H 0.97004 * 119.99553 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6515 2.0992 1.2553 6 6 3.5648 1.4442 -0.1257 7 1 3.9208 2.4706 -0.2150 8 6 4.1706 0.8072 1.0983 9 6 4.2822 -0.5656 1.3418 10 7 4.8610 -0.7289 2.5037 11 7 5.1359 0.5367 3.0375 12 6 5.7798 0.8078 4.3252 13 6 4.7072 1.4622 2.1539 14 7 3.9587 0.6838 -1.3193 15 6 5.4208 0.5843 -1.4214 16 6 3.3852 1.2772 -2.5345 17 6 3.6006 0.3447 -3.6986 18 1 4.1128 -0.5945 -3.5506 19 6 3.1439 0.6907 -4.9528 20 7 2.5207 1.8347 -5.1331 21 14 3.4116 -0.4647 -6.3959 22 1 2.2596 -1.3953 -6.5053 23 1 3.5300 0.3257 -7.6475 24 1 4.6581 -1.2431 -6.1822 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 2.0423 1.6179 2.0513 31 1 1.9205 3.0717 1.2529 32 1 3.9481 -1.3546 0.6843 33 1 6.8592 0.8690 4.1859 34 1 5.4108 1.7525 4.7243 35 1 5.5487 0.0033 5.0235 36 1 4.7778 2.5337 2.2694 37 1 5.8130 0.0782 -0.5393 38 1 5.6848 0.0162 -2.3134 39 1 5.8492 1.5845 -1.4871 40 1 2.3167 1.4382 -2.3909 41 1 3.8722 2.2308 -2.7379 42 1 2.1997 2.0783 -6.0155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043126743.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:23 Heat of formation + Delta-G solvation = 84.139695 kcal Electronic energy + Delta-G solvation = -21441.274461 eV Core-core repulsion = 18458.230766 eV Total energy + Delta-G solvation = -2983.043695 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.19666 -37.88766 -34.70953 -33.13659 -32.37649 -30.98976 -29.93066 -27.84616 -27.11813 -26.07861 -23.86025 -23.05523 -21.32533 -20.51132 -20.34242 -18.76822 -16.73296 -16.15297 -15.76048 -15.36725 -14.87565 -14.75019 -14.25296 -14.13365 -13.81001 -13.23777 -12.92807 -12.75659 -12.60851 -12.47501 -12.28849 -12.14443 -11.90235 -11.40305 -11.18759 -10.88415 -10.78805 -10.62828 -10.53573 -10.42268 -10.13590 -9.92430 -9.67455 -9.24445 -9.16760 -8.43575 -8.37978 -8.01909 -7.18609 -5.99435 -3.99817 2.00205 2.62777 3.03944 3.34721 3.40868 3.44180 4.44466 4.53485 4.84138 4.95787 5.00911 5.15186 5.23518 5.28989 5.37931 5.43087 5.65454 5.77938 5.86615 5.92914 6.02713 6.22223 6.24752 6.36232 6.37557 6.46659 6.59373 6.70578 6.82147 6.85637 6.95523 7.10062 7.10775 7.30013 7.38034 7.58927 7.81436 7.83502 7.89769 8.13785 8.25403 8.60079 9.07850 9.64120 11.11383 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.022804 B = 0.005650 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.558791 B = 4954.774201 C = 5530.057051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 C 0.103 3.897 4 H 0.087 0.913 5 N -0.838 5.838 6 C 0.127 3.873 7 H 0.028 0.972 8 C -0.206 4.206 9 C 0.082 3.918 10 N -0.308 5.308 11 N -0.384 5.384 12 C 0.106 3.894 13 C 0.038 3.962 14 N -0.523 5.523 15 C 0.041 3.959 16 C 0.190 3.810 17 C -0.504 4.504 18 H 0.063 0.937 19 C 0.056 3.944 20 N -0.898 5.898 21 Si 0.895 3.105 22 H -0.280 1.280 23 H -0.289 1.289 24 H -0.275 1.275 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.039 0.961 28 H 0.051 0.949 29 H 0.089 0.911 30 H 0.332 0.668 31 H 0.330 0.670 32 H 0.186 0.814 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.164 0.836 37 H 0.045 0.955 38 H 0.072 0.928 39 H 0.005 0.995 40 H 0.038 0.962 41 H -0.014 1.014 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.278 0.617 16.415 16.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.143 4.143 3 C -0.009 4.009 4 H 0.105 0.895 5 N -0.365 5.365 6 C 0.014 3.986 7 H 0.046 0.954 8 C -0.218 4.218 9 C -0.105 4.105 10 N -0.129 5.129 11 N -0.167 5.167 12 C -0.035 4.035 13 C -0.107 4.107 14 N -0.248 5.248 15 C -0.108 4.108 16 C 0.065 3.935 17 C -0.542 4.542 18 H 0.081 0.919 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.723 3.277 22 H -0.206 1.206 23 H -0.215 1.215 24 H -0.200 1.200 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.203 0.797 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.182 0.818 37 H 0.064 0.936 38 H 0.091 0.909 39 H 0.023 0.977 40 H 0.056 0.944 41 H 0.004 0.996 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.738 -0.737 17.118 17.351 hybrid contribution 1.362 1.231 -1.428 2.326 sum 4.100 0.494 15.689 16.224 Atomic orbital electron populations 1.21671 0.96669 1.00009 1.01599 1.21451 0.94875 0.95239 1.02690 1.21514 0.91034 0.96473 0.91839 0.89492 1.59121 1.66786 1.06014 1.04606 1.20732 0.95945 0.93635 0.88269 0.95444 1.20081 1.09890 0.93517 0.98342 1.23823 0.96383 0.97029 0.93233 1.77362 1.22009 1.01045 1.12466 1.48341 1.47884 1.04101 1.16375 1.21735 0.97470 1.02578 0.81764 1.22210 1.01041 0.95765 0.91729 1.62128 1.08949 1.51082 1.02640 1.22179 0.88819 0.98657 1.01111 1.19806 0.95272 0.93191 0.85232 1.21143 1.36568 1.04447 0.92072 0.91899 1.24961 0.95422 0.95284 0.98850 1.69957 1.39112 1.21797 1.22954 0.86543 0.78591 0.80714 0.81820 1.20636 1.21466 1.19951 0.93221 0.92755 0.94168 0.93081 0.89274 0.85483 0.85910 0.79700 0.91275 0.89936 0.89613 0.81836 0.93622 0.90923 0.97678 0.94399 0.99575 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.80 37.16 0.36 -1.90 16 2 C -0.10 -1.76 4.90 -26.74 -0.13 -1.89 16 3 C 0.10 1.71 2.18 -67.71 -0.15 1.56 16 4 H 0.09 1.69 6.47 -51.93 -0.34 1.36 16 5 N -0.84 -11.56 8.61 -4.67 -0.04 -11.60 16 6 C 0.13 2.15 1.96 -68.87 -0.13 2.02 16 7 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 8 C -0.21 -3.06 2.44 -105.05 -0.26 -3.32 16 9 C 0.08 1.27 8.72 -17.37 -0.15 1.12 16 10 N -0.31 -4.69 12.58 30.62 0.39 -4.30 16 11 N -0.38 -4.76 4.01 -68.16 -0.27 -5.03 16 12 C 0.11 0.82 11.47 59.85 0.69 1.50 16 13 C 0.04 0.48 10.89 -17.22 -0.19 0.29 16 14 N -0.52 -10.61 3.35 -237.74 -0.80 -11.40 16 15 C 0.04 0.81 9.00 60.06 0.54 1.35 16 16 C 0.19 4.72 4.42 -4.98 -0.02 4.70 16 17 C -0.50 -13.72 8.46 -34.44 -0.29 -14.01 16 18 H 0.06 1.70 7.12 -52.49 -0.37 1.33 16 19 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 21 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.83 7.75 -51.93 -0.40 0.43 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.82 6.17 -51.93 -0.32 0.50 16 29 H 0.09 1.74 7.20 -51.93 -0.37 1.36 16 30 H 0.33 4.44 7.40 -39.30 -0.29 4.15 16 31 H 0.33 4.08 9.07 -39.29 -0.36 3.73 16 32 H 0.19 2.93 7.86 -52.49 -0.41 2.52 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.05 0.82 6.19 -51.93 -0.32 0.50 16 38 H 0.07 1.53 6.76 -51.93 -0.35 1.18 16 39 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 40 H 0.04 1.00 5.93 -51.93 -0.31 0.69 16 41 H -0.01 -0.37 8.12 -51.93 -0.42 -0.79 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 331.79 15.07 5.00 5.00 Total: -1.00 -30.19 331.79 -6.62 -36.81 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.79 Total: 6.73 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 0.17 Total: -7.11 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: 0.01 Total: -57.90 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.19 -6.62 -36.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043126743.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.948 kcal (2) G-P(sol) polarization free energy of solvation -30.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds