Wall clock time and date at job start Mon Mar 30 2020 04:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 N 1.46910 * 109.47127 * 65.00091 * 3 2 1 6 6 C 1.52997 * 109.47448 * 184.99813 * 3 2 1 7 7 H 1.09007 * 109.47177 * 175.00153 * 6 3 2 8 8 C 1.50694 * 109.47462 * 295.00293 * 6 3 2 9 9 C 1.39870 * 126.04239 * 80.02106 * 8 6 3 10 10 N 1.30836 * 108.20312 * 179.97438 * 9 8 6 11 11 N 1.40081 * 108.20588 * 0.02562 * 10 9 8 12 12 C 1.46506 * 126.03703 * 179.97438 * 11 10 9 13 13 C 1.34945 * 107.92928 * 359.75848 * 11 10 9 14 14 N 1.46902 * 109.47107 * 55.00539 * 6 3 2 15 15 C 1.46899 * 111.00033 * 183.95543 * 14 6 3 16 16 C 1.46897 * 111.00315 * 59.99727 * 14 6 3 17 17 C 1.50698 * 109.47117 * 190.00540 * 16 14 6 18 18 H 1.07999 * 120.00344 * 359.97438 * 17 16 14 19 19 C 1.37884 * 120.00033 * 179.97438 * 17 16 14 20 20 N 1.31516 * 119.99477 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00150 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47292 * 89.99952 * 21 19 17 23 23 H 1.48499 * 109.47044 * 210.00186 * 21 19 17 24 24 H 1.48503 * 109.46928 * 330.00019 * 21 19 17 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 1.00892 * 110.99957 * 60.00190 * 5 3 2 31 31 H 1.00899 * 110.99816 * 183.95423 * 5 3 2 32 32 H 1.08000 * 125.89807 * 359.96140 * 9 8 6 33 33 H 1.09003 * 109.46804 * 90.02128 * 12 11 10 34 34 H 1.08994 * 109.47328 * 210.02600 * 12 11 10 35 35 H 1.09004 * 109.46998 * 330.02808 * 12 11 10 36 36 H 1.07995 * 126.12988 * 180.24420 * 13 11 10 37 37 H 1.08999 * 109.47364 * 59.99919 * 15 14 6 38 38 H 1.09001 * 109.46748 * 179.97438 * 15 14 6 39 39 H 1.08999 * 109.46770 * 299.99153 * 15 14 6 40 40 H 1.09004 * 109.47006 * 310.00571 * 16 14 6 41 41 H 1.08993 * 109.47205 * 69.99949 * 16 14 6 42 42 H 0.97004 * 119.99553 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6515 2.0992 1.2553 6 6 3.5648 1.4442 -0.1257 7 1 3.9208 2.4706 -0.2150 8 6 4.1706 0.8072 1.0983 9 6 4.2822 -0.5656 1.3418 10 7 4.8610 -0.7289 2.5037 11 7 5.1359 0.5367 3.0375 12 6 5.7798 0.8078 4.3252 13 6 4.7072 1.4622 2.1539 14 7 3.9587 0.6838 -1.3193 15 6 5.4208 0.5843 -1.4214 16 6 3.3852 1.2772 -2.5345 17 6 3.6006 0.3447 -3.6986 18 1 4.1128 -0.5945 -3.5506 19 6 3.1439 0.6907 -4.9528 20 7 2.5207 1.8347 -5.1331 21 14 3.4116 -0.4647 -6.3959 22 1 2.2596 -1.3953 -6.5053 23 1 3.5300 0.3257 -7.6475 24 1 4.6581 -1.2431 -6.1822 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 2.0423 1.6179 2.0513 31 1 1.9205 3.0717 1.2529 32 1 3.9481 -1.3546 0.6843 33 1 6.8592 0.8690 4.1859 34 1 5.4108 1.7525 4.7243 35 1 5.5487 0.0033 5.0235 36 1 4.7778 2.5337 2.2694 37 1 5.8130 0.0782 -0.5393 38 1 5.6848 0.0162 -2.3134 39 1 5.8492 1.5845 -1.4871 40 1 2.3167 1.4382 -2.3909 41 1 3.8722 2.2308 -2.7379 42 1 2.1997 2.0783 -6.0155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043126743.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:22 Heat of formation + Delta-G solvation = 62.654520 kcal Electronic energy + Delta-G solvation = -21442.206129 eV Core-core repulsion = 18458.230766 eV Total energy + Delta-G solvation = -2983.975363 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.29897 -39.33037 -36.29312 -34.58997 -33.89591 -32.30425 -31.15049 -29.31292 -28.74411 -27.26226 -25.50920 -24.53644 -22.81042 -21.78444 -21.54088 -20.08801 -18.54684 -17.50420 -16.99804 -16.77289 -16.34262 -16.22758 -15.71716 -15.28395 -15.25143 -14.64586 -14.21943 -14.04235 -13.99247 -13.72995 -13.53325 -13.40327 -13.29060 -13.01471 -12.79276 -12.72190 -12.48363 -12.25012 -12.17859 -11.70335 -11.68592 -11.52254 -11.23069 -11.18185 -10.52193 -10.25948 -9.60031 -9.17050 -8.90178 -8.14399 -6.22397 0.97492 1.43372 1.44499 1.54783 1.75484 1.86372 2.44299 3.18583 3.32934 3.69531 3.92785 3.98087 4.09799 4.28943 4.34690 4.45931 4.48719 4.53994 4.57850 4.69264 4.73627 4.77081 4.87418 4.96574 5.03901 5.09108 5.14807 5.23417 5.31647 5.35110 5.40633 5.56955 5.69930 5.72632 5.73925 6.13263 6.19403 6.31700 6.42544 6.71505 6.74442 6.83740 6.94158 7.46527 8.96307 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.022804 B = 0.005650 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.558791 B = 4954.774201 C = 5530.057051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 C 0.113 3.887 4 H 0.052 0.948 5 N -0.827 5.827 6 C 0.134 3.866 7 H 0.021 0.979 8 C -0.228 4.228 9 C 0.070 3.930 10 N -0.329 5.329 11 N -0.375 5.375 12 C 0.095 3.905 13 C 0.060 3.940 14 N -0.523 5.523 15 C 0.051 3.949 16 C 0.209 3.791 17 C -0.516 4.516 18 H 0.061 0.939 19 C 0.004 3.996 20 N -0.933 5.933 21 Si 0.962 3.038 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.266 1.266 25 H 0.031 0.969 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.341 0.659 31 H 0.341 0.659 32 H 0.173 0.827 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.198 0.802 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.001 0.999 40 H 0.019 0.981 41 H -0.047 1.047 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.071 0.558 18.424 18.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.135 4.135 3 C 0.001 3.999 4 H 0.070 0.930 5 N -0.356 5.356 6 C 0.022 3.978 7 H 0.039 0.961 8 C -0.240 4.240 9 C -0.115 4.115 10 N -0.152 5.152 11 N -0.157 5.157 12 C -0.045 4.045 13 C -0.088 4.088 14 N -0.247 5.247 15 C -0.098 4.098 16 C 0.083 3.917 17 C -0.554 4.554 18 H 0.079 0.921 19 C -0.194 4.194 20 N -0.574 5.574 21 Si 0.787 3.213 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.191 1.191 25 H 0.050 0.950 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.154 0.846 31 H 0.154 0.846 32 H 0.190 0.810 33 H 0.100 0.900 34 H 0.133 0.867 35 H 0.109 0.891 36 H 0.215 0.785 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.020 0.980 40 H 0.037 0.963 41 H -0.030 1.030 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.549 -0.812 19.171 19.513 hybrid contribution 1.163 1.300 -1.899 2.579 sum 4.711 0.488 17.272 17.909 Atomic orbital electron populations 1.21616 0.95902 1.00673 1.01153 1.21311 0.95454 0.95129 1.01565 1.21231 0.90664 0.96048 0.91998 0.93022 1.59008 1.66567 1.06602 1.03441 1.20656 0.96306 0.93010 0.87816 0.96068 1.19773 1.12307 0.93447 0.98451 1.23662 0.97191 0.97066 0.93592 1.77317 1.22567 1.02868 1.12407 1.48717 1.46570 1.03094 1.17345 1.22173 0.98118 1.04469 0.79737 1.22601 0.98623 0.97129 0.90449 1.62024 1.09289 1.51253 1.02140 1.22073 0.88300 0.98298 1.01115 1.19408 0.94009 0.91405 0.86870 1.21457 1.36240 1.04602 0.93144 0.92092 1.25803 0.95099 0.96784 1.01668 1.70082 1.40130 1.23549 1.23652 0.85496 0.78811 0.78694 0.78294 1.20003 1.21055 1.19088 0.94990 0.91720 0.92993 0.92012 0.92451 0.84557 0.84645 0.81000 0.89978 0.86664 0.89073 0.78490 0.91648 0.92776 0.98019 0.96280 1.02950 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.34 9.80 71.98 0.71 -3.63 16 2 C -0.10 -3.30 4.90 30.59 0.15 -3.15 16 3 C 0.11 3.80 2.18 44.91 0.10 3.90 16 4 H 0.05 2.12 6.47 -2.39 -0.02 2.10 16 5 N -0.83 -21.71 8.61 -168.67 -1.45 -23.16 16 6 C 0.13 4.58 1.96 44.17 0.09 4.66 16 7 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 8 C -0.23 -6.44 2.44 -20.14 -0.05 -6.48 16 9 C 0.07 2.12 8.72 85.24 0.74 2.87 16 10 N -0.33 -9.42 12.58 -57.02 -0.72 -10.14 16 11 N -0.38 -8.05 4.01 -369.55 -1.48 -9.54 16 12 C 0.09 1.07 11.47 127.77 1.47 2.54 16 13 C 0.06 1.29 10.89 83.54 0.91 2.20 16 14 N -0.52 -21.83 3.35 -906.07 -3.03 -24.87 16 15 C 0.05 2.02 9.00 127.69 1.15 3.17 16 16 C 0.21 10.90 4.42 85.56 0.38 11.28 16 17 C -0.52 -28.97 8.46 25.60 0.22 -28.75 16 18 H 0.06 3.38 7.12 -2.91 -0.02 3.36 16 19 C 0.00 0.24 5.46 84.66 0.46 0.71 16 20 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 21 Si 0.96 44.63 29.54 68.60 2.03 46.65 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.06 1.91 7.75 -2.39 -0.02 1.89 16 27 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.06 1.97 6.17 -2.39 -0.01 1.95 16 29 H 0.06 2.33 7.20 -2.39 -0.02 2.31 16 30 H 0.34 8.28 7.40 -89.70 -0.66 7.61 16 31 H 0.34 7.84 9.07 -89.69 -0.81 7.03 16 32 H 0.17 5.53 7.86 -2.91 -0.02 5.51 16 33 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.20 2.91 8.06 -2.91 -0.02 2.88 16 37 H 0.06 2.33 6.19 -2.39 -0.01 2.32 16 38 H 0.05 2.32 6.76 -2.39 -0.02 2.30 16 39 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.02 1.07 5.93 -2.38 -0.01 1.06 16 41 H -0.05 -2.73 8.12 -2.39 -0.02 -2.75 16 42 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -66.87 331.79 1.48 -65.39 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -0.46 Total: 22.17 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 6.32 Total: -10.69 kcal Atomic # 7 Polarization: -117.12 SS G_CDS: -6.40 Total: -123.52 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -66.87 1.48 -65.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043126743.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.046 kcal (2) G-P(sol) polarization free energy of solvation -66.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds