Wall clock time and date at job start Mon Mar 30 2020 04:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47032 * 2 1 4 4 H 1.09002 * 109.47527 * 54.99787 * 3 2 1 5 5 N 1.46903 * 109.47059 * 295.00047 * 3 2 1 6 6 C 1.52999 * 109.47224 * 175.00058 * 3 2 1 7 7 H 1.09004 * 109.47347 * 61.48870 * 6 3 2 8 8 C 1.50698 * 109.47041 * 301.49044 * 6 3 2 9 9 C 1.39880 * 126.03614 * 280.02012 * 8 6 3 10 10 N 1.30835 * 108.20067 * 179.97438 * 9 8 6 11 11 N 1.40090 * 108.20574 * 0.02562 * 10 9 8 12 12 C 1.46495 * 126.03428 * 180.02562 * 11 10 9 13 13 C 1.34946 * 107.92677 * 359.75582 * 11 10 9 14 14 N 1.46898 * 109.47287 * 181.48629 * 6 3 2 15 15 C 1.46897 * 111.00034 * 274.73460 * 14 6 3 16 16 C 1.46898 * 111.00033 * 38.68981 * 14 6 3 17 17 C 1.50704 * 109.47255 * 158.20652 * 16 14 6 18 18 H 1.07991 * 119.99860 * 359.97438 * 17 16 14 19 19 C 1.37873 * 119.99896 * 180.02562 * 17 16 14 20 20 N 1.31521 * 120.00231 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00021 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47246 * 89.99109 * 21 19 17 23 23 H 1.48500 * 109.47034 * 209.99634 * 21 19 17 24 24 H 1.48502 * 109.46826 * 329.99026 * 21 19 17 25 25 H 1.09000 * 109.46880 * 59.99877 * 1 2 3 26 26 H 1.08998 * 109.46808 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47206 * 299.99893 * 1 2 3 28 28 H 1.08996 * 109.47206 * 240.00107 * 2 1 3 29 29 H 1.09005 * 109.47305 * 119.99943 * 2 1 3 30 30 H 1.00902 * 110.99994 * 167.13664 * 5 3 2 31 31 H 1.00907 * 110.99640 * 291.08241 * 5 3 2 32 32 H 1.08000 * 125.89423 * 0.02562 * 9 8 6 33 33 H 1.09002 * 109.47346 * 89.97129 * 12 11 10 34 34 H 1.08996 * 109.47258 * 209.97487 * 12 11 10 35 35 H 1.09006 * 109.47412 * 329.97239 * 12 11 10 36 36 H 1.07998 * 126.13063 * 180.23969 * 13 11 10 37 37 H 1.09008 * 109.47169 * 190.23142 * 15 14 6 38 38 H 1.09002 * 109.47331 * 310.22700 * 15 14 6 39 39 H 1.08998 * 109.47618 * 70.23249 * 15 14 6 40 40 H 1.09004 * 109.46935 * 278.20019 * 16 14 6 41 41 H 1.08995 * 109.47104 * 38.20221 * 16 14 6 42 42 H 0.96996 * 119.99740 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6513 2.0993 -1.2553 6 6 3.5648 1.4444 0.1257 7 1 4.0006 0.9282 -0.7298 8 6 3.9650 0.7383 1.3955 9 6 3.9473 1.2863 2.6824 10 7 4.3612 0.3719 3.5216 11 7 4.6564 -0.7884 2.7942 12 6 5.1500 -2.0512 3.3490 13 6 4.4002 -0.5392 1.4929 14 7 4.0515 2.8299 0.1615 15 6 4.2318 3.3598 -1.1966 16 6 3.1493 3.6847 0.9446 17 6 3.8962 4.9070 1.4132 18 1 4.9369 5.0357 1.1553 19 6 3.2509 5.8604 2.1718 20 7 1.9835 5.7034 2.4863 21 14 4.1764 7.3758 2.7520 22 1 4.0473 8.4530 1.7380 23 1 3.6067 7.8398 4.0425 24 1 5.6109 7.0391 2.9367 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7870 3.0975 -1.1982 31 1 2.1553 1.7100 -2.0381 32 1 3.6435 2.2904 2.9389 33 1 4.3049 -2.6880 3.6108 34 1 5.7695 -2.5561 2.6079 35 1 5.7428 -1.8491 4.2412 36 1 4.5226 -1.2342 0.6753 37 1 4.7599 4.3122 -1.1480 38 1 4.8125 2.6523 -1.7886 39 1 3.2570 3.5083 -1.6612 40 1 2.3072 3.9896 0.3233 41 1 2.7819 3.1302 1.8081 42 1 1.5295 6.3744 3.0197 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043126745.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:24 Heat of formation + Delta-G solvation = 95.539712 kcal Electronic energy + Delta-G solvation = -21584.214095 eV Core-core repulsion = 18601.664741 eV Total energy + Delta-G solvation = -2982.549354 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.88057 -38.36728 -34.38589 -32.93148 -32.43301 -30.74434 -30.23230 -27.79997 -27.44122 -25.55011 -24.30224 -23.03872 -20.92936 -20.52929 -20.22283 -18.94443 -16.68828 -16.37431 -15.51544 -15.23395 -14.83901 -14.50125 -14.34002 -14.07420 -13.78642 -13.35297 -13.07408 -12.75900 -12.52523 -12.33314 -12.25428 -11.95865 -11.86052 -11.41075 -11.18817 -10.97596 -10.89996 -10.63308 -10.53939 -10.33016 -10.28339 -10.07873 -9.66584 -9.23408 -8.91776 -8.67690 -8.38855 -7.84230 -6.94578 -5.99662 -4.01199 2.30292 2.91540 3.34023 3.38764 3.41049 3.45666 4.45296 4.71535 4.97026 4.99631 5.16588 5.19869 5.32302 5.35373 5.41148 5.48578 5.60714 5.65635 5.79583 5.94995 6.00142 6.04753 6.14517 6.19064 6.24919 6.32742 6.37689 6.61298 6.63544 6.70040 6.72859 7.16021 7.25639 7.33497 7.41191 7.61149 7.84741 7.88597 8.09707 8.19409 8.24965 8.56002 9.07260 9.63458 11.09603 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.015440 B = 0.007140 C = 0.005751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.045079 B = 3920.697708 C = 4867.970922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C 0.066 3.934 4 H 0.093 0.907 5 N -0.844 5.844 6 C 0.129 3.871 7 H 0.065 0.935 8 C -0.194 4.194 9 C 0.078 3.922 10 N -0.309 5.309 11 N -0.389 5.389 12 C 0.108 3.892 13 C 0.039 3.961 14 N -0.532 5.532 15 C 0.029 3.971 16 C 0.187 3.813 17 C -0.506 4.506 18 H 0.061 0.939 19 C 0.057 3.943 20 N -0.896 5.896 21 Si 0.894 3.106 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.063 0.937 26 H 0.038 0.962 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.349 0.651 31 H 0.328 0.672 32 H 0.197 0.803 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.163 0.837 37 H 0.069 0.931 38 H 0.044 0.956 39 H 0.020 0.980 40 H -0.002 1.002 41 H 0.037 0.963 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.378 -14.371 -4.827 15.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.145 4.145 3 C -0.047 4.047 4 H 0.111 0.889 5 N -0.377 5.377 6 C 0.017 3.983 7 H 0.083 0.917 8 C -0.207 4.207 9 C -0.108 4.108 10 N -0.130 5.130 11 N -0.172 5.172 12 C -0.034 4.034 13 C -0.106 4.106 14 N -0.255 5.255 15 C -0.120 4.120 16 C 0.062 3.938 17 C -0.544 4.544 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.722 3.278 22 H -0.209 1.209 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.082 0.918 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.168 0.832 31 H 0.140 0.860 32 H 0.213 0.787 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.180 0.820 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.038 0.962 40 H 0.016 0.984 41 H 0.055 0.945 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.265 -14.951 -3.062 15.428 hybrid contribution 0.574 1.313 -0.924 1.706 sum 2.839 -13.637 -3.987 14.489 Atomic orbital electron populations 1.21640 0.95904 0.99870 1.02456 1.21469 0.96121 0.96125 1.00821 1.22207 0.93763 0.95262 0.93477 0.88932 1.59084 1.64394 1.09829 1.04372 1.20695 0.93624 0.90878 0.93115 0.91663 1.19860 1.11396 0.93481 0.95965 1.24346 0.96498 0.99186 0.90735 1.77392 1.22861 0.92457 1.20328 1.48361 1.52650 1.11235 1.04997 1.21672 0.99515 0.81792 1.00398 1.22044 1.03203 0.97895 0.87497 1.62208 1.50525 1.00183 1.12550 1.22497 0.99115 1.00513 0.89900 1.19981 0.90056 0.91331 0.92431 1.21173 0.97457 1.03782 1.32025 0.92047 1.24959 0.94874 0.98338 0.96302 1.69946 1.09613 1.35388 1.38648 0.86560 0.80118 0.83089 0.78033 1.20864 1.21337 1.19876 0.91765 0.94294 0.93259 0.93128 0.92020 0.83206 0.86017 0.78668 0.91499 0.90202 0.89779 0.81976 0.91180 0.93741 0.96207 0.98444 0.94486 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.80 37.16 0.36 -1.63 16 2 C -0.11 -1.53 5.40 -26.73 -0.14 -1.67 16 3 C 0.07 1.10 1.79 -67.71 -0.12 0.98 16 4 H 0.09 1.90 6.18 -51.93 -0.32 1.58 16 5 N -0.84 -13.29 7.86 -4.67 -0.04 -13.33 16 6 C 0.13 2.19 1.98 -68.87 -0.14 2.06 16 7 H 0.07 1.01 7.62 -51.93 -0.40 0.61 16 8 C -0.19 -3.40 4.04 -105.05 -0.42 -3.82 16 9 C 0.08 1.58 10.83 -17.36 -0.19 1.39 16 10 N -0.31 -5.93 12.58 30.63 0.39 -5.54 16 11 N -0.39 -5.88 4.01 -68.16 -0.27 -6.16 16 12 C 0.11 1.06 11.47 59.84 0.69 1.74 16 13 C 0.04 0.57 10.51 -17.22 -0.18 0.39 16 14 N -0.53 -10.66 4.41 -237.73 -1.05 -11.71 16 15 C 0.03 0.51 8.88 60.06 0.53 1.04 16 16 C 0.19 4.47 2.68 -4.98 -0.01 4.46 16 17 C -0.51 -13.67 8.88 -34.44 -0.31 -13.98 16 18 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 19 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -25.85 13.29 55.43 0.74 -25.12 16 21 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 H 0.06 0.93 7.75 -51.93 -0.40 0.53 16 26 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.91 6.36 -51.93 -0.33 0.58 16 30 H 0.35 6.19 4.79 -39.29 -0.19 6.00 16 31 H 0.33 4.50 8.57 -39.29 -0.34 4.16 16 32 H 0.20 4.47 5.76 -52.49 -0.30 4.16 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.07 1.34 7.87 -51.92 -0.41 0.93 16 38 H 0.04 0.67 7.79 -51.93 -0.40 0.27 16 39 H 0.02 0.33 4.80 -51.93 -0.25 0.08 16 40 H 0.00 -0.05 5.89 -51.93 -0.31 -0.36 16 41 H 0.04 0.95 4.13 -51.93 -0.21 0.73 16 42 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 325.27 15.07 4.90 4.90 Total: -1.00 -30.25 325.27 -6.75 -37.00 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -6.36 Total: 10.99 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -0.03 Total: -7.57 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -0.24 Total: -61.86 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.25 -6.75 -37.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043126745.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.538 kcal (2) G-P(sol) polarization free energy of solvation -30.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds