Wall clock time and date at job start Mon Mar 30 2020 04:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47032 * 2 1 4 4 H 1.09002 * 109.47527 * 54.99787 * 3 2 1 5 5 N 1.46903 * 109.47059 * 295.00047 * 3 2 1 6 6 C 1.52999 * 109.47224 * 175.00058 * 3 2 1 7 7 H 1.09004 * 109.47347 * 61.48870 * 6 3 2 8 8 C 1.50698 * 109.47041 * 301.49044 * 6 3 2 9 9 C 1.39880 * 126.03614 * 280.02012 * 8 6 3 10 10 N 1.30835 * 108.20067 * 179.97438 * 9 8 6 11 11 N 1.40090 * 108.20574 * 0.02562 * 10 9 8 12 12 C 1.46495 * 126.03428 * 180.02562 * 11 10 9 13 13 C 1.34946 * 107.92677 * 359.75582 * 11 10 9 14 14 N 1.46898 * 109.47287 * 181.48629 * 6 3 2 15 15 C 1.46897 * 111.00034 * 274.73460 * 14 6 3 16 16 C 1.46898 * 111.00033 * 38.68981 * 14 6 3 17 17 C 1.50704 * 109.47255 * 158.20652 * 16 14 6 18 18 H 1.07991 * 119.99860 * 359.97438 * 17 16 14 19 19 C 1.37873 * 119.99896 * 180.02562 * 17 16 14 20 20 N 1.31521 * 120.00231 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00021 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47246 * 89.99109 * 21 19 17 23 23 H 1.48500 * 109.47034 * 209.99634 * 21 19 17 24 24 H 1.48502 * 109.46826 * 329.99026 * 21 19 17 25 25 H 1.09000 * 109.46880 * 59.99877 * 1 2 3 26 26 H 1.08998 * 109.46808 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47206 * 299.99893 * 1 2 3 28 28 H 1.08996 * 109.47206 * 240.00107 * 2 1 3 29 29 H 1.09005 * 109.47305 * 119.99943 * 2 1 3 30 30 H 1.00902 * 110.99994 * 167.13664 * 5 3 2 31 31 H 1.00907 * 110.99640 * 291.08241 * 5 3 2 32 32 H 1.08000 * 125.89423 * 0.02562 * 9 8 6 33 33 H 1.09002 * 109.47346 * 89.97129 * 12 11 10 34 34 H 1.08996 * 109.47258 * 209.97487 * 12 11 10 35 35 H 1.09006 * 109.47412 * 329.97239 * 12 11 10 36 36 H 1.07998 * 126.13063 * 180.23969 * 13 11 10 37 37 H 1.09008 * 109.47169 * 190.23142 * 15 14 6 38 38 H 1.09002 * 109.47331 * 310.22700 * 15 14 6 39 39 H 1.08998 * 109.47618 * 70.23249 * 15 14 6 40 40 H 1.09004 * 109.46935 * 278.20019 * 16 14 6 41 41 H 1.08995 * 109.47104 * 38.20221 * 16 14 6 42 42 H 0.96996 * 119.99740 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6513 2.0993 -1.2553 6 6 3.5648 1.4444 0.1257 7 1 4.0006 0.9282 -0.7298 8 6 3.9650 0.7383 1.3955 9 6 3.9473 1.2863 2.6824 10 7 4.3612 0.3719 3.5216 11 7 4.6564 -0.7884 2.7942 12 6 5.1500 -2.0512 3.3490 13 6 4.4002 -0.5392 1.4929 14 7 4.0515 2.8299 0.1615 15 6 4.2318 3.3598 -1.1966 16 6 3.1493 3.6847 0.9446 17 6 3.8962 4.9070 1.4132 18 1 4.9369 5.0357 1.1553 19 6 3.2509 5.8604 2.1718 20 7 1.9835 5.7034 2.4863 21 14 4.1764 7.3758 2.7520 22 1 4.0473 8.4530 1.7380 23 1 3.6067 7.8398 4.0425 24 1 5.6109 7.0391 2.9367 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7870 3.0975 -1.1982 31 1 2.1553 1.7100 -2.0381 32 1 3.6435 2.2904 2.9389 33 1 4.3049 -2.6880 3.6108 34 1 5.7695 -2.5561 2.6079 35 1 5.7428 -1.8491 4.2412 36 1 4.5226 -1.2342 0.6753 37 1 4.7599 4.3122 -1.1480 38 1 4.8125 2.6523 -1.7886 39 1 3.2570 3.5083 -1.6612 40 1 2.3072 3.9896 0.3233 41 1 2.7819 3.1302 1.8081 42 1 1.5295 6.3744 3.0197 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043126745.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:24 Heat of formation + Delta-G solvation = 72.864661 kcal Electronic energy + Delta-G solvation = -21585.197359 eV Core-core repulsion = 18601.664741 eV Total energy + Delta-G solvation = -2983.532618 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.17421 -39.78589 -35.89019 -34.46852 -34.01360 -32.03423 -31.55581 -29.35757 -28.95282 -26.71156 -25.93260 -24.60461 -22.31146 -21.99151 -21.42979 -20.33216 -18.59474 -17.59250 -17.04977 -16.69302 -16.33233 -15.95839 -15.77004 -15.38845 -15.17383 -14.79670 -14.34818 -14.08328 -13.85730 -13.69918 -13.42192 -13.34752 -13.23774 -12.85113 -12.84008 -12.62992 -12.37241 -12.27753 -12.10046 -11.84490 -11.69457 -11.51777 -11.25657 -11.15658 -10.51865 -10.18983 -10.05258 -9.15671 -8.47109 -8.11355 -6.21723 1.07572 1.39440 1.41087 1.51638 1.85536 1.96962 2.42796 3.18004 3.43355 3.67675 3.88212 3.98296 4.11898 4.33082 4.36372 4.44074 4.51202 4.52686 4.59845 4.68841 4.73918 4.74577 4.82135 4.93025 5.04915 5.11521 5.15364 5.19330 5.24259 5.32211 5.45957 5.51745 5.55674 5.72057 5.80173 6.16270 6.25739 6.33399 6.52121 6.64642 6.77112 6.90613 6.95723 7.47310 8.95047 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.015440 B = 0.007140 C = 0.005751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.045079 B = 3920.697708 C = 4867.970922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 C 0.075 3.925 4 H 0.042 0.958 5 N -0.840 5.840 6 C 0.136 3.864 7 H 0.096 0.904 8 C -0.220 4.220 9 C 0.050 3.950 10 N -0.344 5.344 11 N -0.380 5.380 12 C 0.095 3.905 13 C 0.067 3.933 14 N -0.544 5.544 15 C 0.029 3.971 16 C 0.211 3.789 17 C -0.517 4.517 18 H 0.052 0.948 19 C 0.006 3.994 20 N -0.929 5.929 21 Si 0.956 3.044 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.272 1.272 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.025 0.975 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.337 0.663 31 H 0.344 0.656 32 H 0.152 0.848 33 H 0.085 0.915 34 H 0.119 0.881 35 H 0.083 0.917 36 H 0.215 0.785 37 H 0.048 0.952 38 H 0.079 0.921 39 H 0.028 0.972 40 H -0.025 1.025 41 H 0.016 0.984 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.771 -17.154 -6.561 18.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.135 4.135 3 C -0.038 4.038 4 H 0.060 0.940 5 N -0.373 5.373 6 C 0.024 3.976 7 H 0.114 0.886 8 C -0.232 4.232 9 C -0.135 4.135 10 N -0.167 5.167 11 N -0.163 5.163 12 C -0.044 4.044 13 C -0.081 4.081 14 N -0.267 5.267 15 C -0.119 4.119 16 C 0.085 3.915 17 C -0.555 4.555 18 H 0.070 0.930 19 C -0.192 4.192 20 N -0.570 5.570 21 Si 0.782 3.218 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.196 1.196 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.044 0.956 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.153 0.847 31 H 0.158 0.842 32 H 0.169 0.831 33 H 0.104 0.896 34 H 0.138 0.862 35 H 0.102 0.898 36 H 0.231 0.769 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.046 0.954 40 H -0.007 1.007 41 H 0.033 0.967 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.673 -17.756 -4.801 18.757 hybrid contribution 0.179 2.033 -0.370 2.074 sum 3.852 -15.723 -5.171 16.994 Atomic orbital electron populations 1.21610 0.95999 1.00965 1.01036 1.21391 0.95965 0.94225 1.01963 1.22003 0.93516 0.96277 0.92011 0.94008 1.59044 1.64708 1.08903 1.04650 1.20738 0.93698 0.88987 0.94163 0.88571 1.19960 1.13441 0.94990 0.94852 1.23835 0.98638 0.98224 0.92785 1.77275 1.24045 0.94007 1.21366 1.48784 1.50837 1.11364 1.05269 1.22165 1.00852 0.79733 1.01678 1.22670 1.00008 0.97149 0.88247 1.62061 1.49674 1.01399 1.13600 1.22519 0.99868 1.00453 0.89109 1.19507 0.89449 0.90684 0.91837 1.21508 0.97155 1.05076 1.31788 0.92996 1.25735 0.95632 1.01257 0.96559 1.70071 1.11037 1.36369 1.39544 0.85588 0.78793 0.79809 0.77657 1.19827 1.21121 1.19639 0.92280 0.91879 0.95615 0.90226 0.92254 0.84664 0.84205 0.83051 0.89608 0.86228 0.89845 0.76875 0.93351 0.90240 0.95375 1.00696 0.96665 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.80 71.98 0.71 -3.04 16 2 C -0.10 -2.56 5.40 30.59 0.17 -2.39 16 3 C 0.08 2.49 1.79 44.91 0.08 2.57 16 4 H 0.04 1.83 6.18 -2.39 -0.01 1.81 16 5 N -0.84 -25.92 7.86 -168.67 -1.33 -27.24 16 6 C 0.14 4.45 1.98 44.17 0.09 4.54 16 7 H 0.10 2.57 7.62 -2.38 -0.02 2.55 16 8 C -0.22 -7.50 4.04 -20.14 -0.08 -7.58 16 9 C 0.05 2.10 10.83 85.24 0.92 3.02 16 10 N -0.34 -13.38 12.58 -57.02 -0.72 -14.09 16 11 N -0.38 -10.52 4.01 -369.57 -1.48 -12.00 16 12 C 0.10 1.49 11.47 127.77 1.47 2.95 16 13 C 0.07 1.70 10.51 83.54 0.88 2.58 16 14 N -0.54 -22.11 4.41 -906.04 -4.00 -26.11 16 15 C 0.03 1.01 8.88 127.69 1.13 2.14 16 16 C 0.21 10.70 2.68 85.56 0.23 10.93 16 17 C -0.52 -29.25 8.88 25.60 0.23 -29.03 16 18 H 0.05 2.97 7.81 -2.92 -0.02 2.95 16 19 C 0.01 0.36 5.46 84.65 0.46 0.82 16 20 N -0.93 -56.21 13.29 21.45 0.28 -55.92 16 21 Si 0.96 45.57 29.54 68.60 2.03 47.59 16 22 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 24 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 25 H 0.06 1.64 7.75 -2.39 -0.02 1.62 16 26 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.02 0.78 8.14 -2.39 -0.02 0.77 16 28 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.06 1.61 6.36 -2.38 -0.02 1.60 16 30 H 0.34 12.14 4.79 -89.69 -0.43 11.71 16 31 H 0.34 8.57 8.57 -89.69 -0.77 7.81 16 32 H 0.15 7.70 5.76 -2.91 -0.02 7.68 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.21 3.17 8.06 -2.91 -0.02 3.15 16 37 H 0.05 1.86 7.87 -2.38 -0.02 1.84 16 38 H 0.08 2.18 7.79 -2.39 -0.02 2.16 16 39 H 0.03 0.93 4.80 -2.39 -0.01 0.92 16 40 H -0.02 -1.33 5.89 -2.38 -0.01 -1.34 16 41 H 0.02 0.86 4.13 -2.39 -0.01 0.85 16 42 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -70.99 325.27 0.90 -70.09 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: -0.17 Total: 30.16 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: 6.28 Total: -12.48 kcal Atomic # 7 Polarization: -128.13 SS G_CDS: -7.24 Total: -135.37 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -70.99 0.90 -70.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043126745.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.958 kcal (2) G-P(sol) polarization free energy of solvation -70.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds