Wall clock time and date at job start Mon Mar 30 2020 04:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.47139 * 2 1 4 4 C 1.46895 * 111.00041 * 195.79235 * 3 2 1 5 5 C 1.50703 * 109.47225 * 76.14759 * 4 3 2 6 6 H 1.07996 * 119.99730 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00086 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00002 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 120.00025 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47195 * 89.99780 * 9 7 5 11 11 H 1.48492 * 109.46931 * 210.00116 * 9 7 5 12 12 H 1.48500 * 109.47109 * 329.99737 * 9 7 5 13 13 C 1.46899 * 111.00220 * 71.83682 * 3 2 1 14 14 H 1.09004 * 109.47188 * 308.94977 * 13 3 2 15 15 C 1.50700 * 109.47024 * 68.94539 * 13 3 2 16 16 C 1.39867 * 126.04027 * 58.90831 * 15 13 3 17 17 N 1.30843 * 108.20444 * 179.82032 * 16 15 13 18 18 N 1.40085 * 108.20157 * 0.43638 * 17 16 15 19 19 C 1.46500 * 126.03567 * 179.74061 * 18 17 16 20 20 C 1.34950 * 107.92684 * 359.72189 * 18 17 16 21 21 C 1.53002 * 109.47340 * 188.94658 * 13 3 2 22 22 H 1.09005 * 109.46625 * 301.88878 * 21 13 3 23 23 C 1.53000 * 109.47123 * 61.88940 * 21 13 3 24 24 N 1.46897 * 109.46819 * 181.89246 * 21 13 3 25 25 H 1.09003 * 109.47376 * 294.52599 * 1 2 3 26 26 H 1.09007 * 109.47144 * 54.52569 * 1 2 3 27 27 H 1.09001 * 109.47207 * 174.52221 * 1 2 3 28 28 H 1.08995 * 109.46982 * 240.00067 * 2 1 3 29 29 H 1.08993 * 109.46960 * 119.99909 * 2 1 3 30 30 H 1.09003 * 109.47488 * 316.14702 * 4 3 2 31 31 H 1.09004 * 109.47420 * 196.14887 * 4 3 2 32 32 H 0.97000 * 119.99754 * 180.02562 * 8 7 5 33 33 H 1.08002 * 125.89962 * 359.97438 * 16 15 13 34 34 H 1.08999 * 109.47158 * 269.97448 * 19 18 17 35 35 H 1.08998 * 109.46946 * 29.97780 * 19 18 17 36 36 H 1.08995 * 109.47211 * 149.97852 * 19 18 17 37 37 H 1.07993 * 126.12646 * 180.02562 * 20 18 17 38 38 H 1.09001 * 109.46916 * 64.99975 * 23 21 13 39 39 H 1.09000 * 109.46939 * 184.99924 * 23 21 13 40 40 H 1.08994 * 109.47088 * 305.00183 * 23 21 13 41 41 H 1.00900 * 111.00362 * 296.04113 * 24 21 13 42 42 H 1.00901 * 111.00480 * 60.00433 * 24 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4393 1.4414 -0.3732 5 6 3.5756 1.2474 -1.8615 6 1 2.6955 1.0975 -2.4693 7 6 4.8237 1.2621 -2.4472 8 7 4.9425 1.0933 -3.7461 9 14 6.3458 1.5220 -1.3960 10 1 6.8544 0.2077 -0.9279 11 1 7.3933 2.2001 -2.2009 12 1 5.9996 2.3649 -0.2234 13 6 1.7921 2.0239 1.3031 14 1 0.7508 1.8905 1.5963 15 6 2.6895 1.3921 2.3358 16 6 4.0867 1.3428 2.2924 17 7 4.5072 0.7192 3.3631 18 7 3.3887 0.3427 4.1178 19 6 3.4121 -0.3832 5.3901 20 6 2.2858 0.7671 3.4661 21 6 2.1057 3.5179 1.2003 22 1 3.1374 3.6510 0.8747 23 6 1.1628 4.1683 0.1861 24 7 1.9217 4.1482 2.5144 25 1 -0.3634 0.4266 0.9350 26 1 -0.3634 0.5964 -0.8370 27 1 -0.3634 -1.0230 -0.0981 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.9835 0.6533 0.1473 31 1 3.8501 2.4118 -0.0942 32 1 5.8206 1.1033 -4.1581 33 1 4.7108 1.7513 1.5114 34 1 3.3749 -1.4554 5.1974 35 1 4.3285 -0.1425 5.9289 36 1 2.5503 -0.0920 5.9905 37 1 1.2641 0.6325 3.7890 38 1 0.1385 4.1133 0.5549 39 1 1.4433 5.2124 0.0468 40 1 1.2348 3.6426 -0.7660 41 1 0.9583 4.0949 2.8094 42 1 2.5339 3.7358 3.2023 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043231695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:11 Heat of formation + Delta-G solvation = 92.299142 kcal Electronic energy + Delta-G solvation = -21852.694310 eV Core-core repulsion = 18870.004434 eV Total energy + Delta-G solvation = -2982.689875 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.26009 -38.04346 -34.74163 -33.04475 -32.54094 -30.46043 -30.19320 -28.51956 -27.49443 -26.44055 -24.37423 -22.48701 -21.10053 -20.60335 -20.35150 -18.90739 -16.92612 -16.50640 -15.77488 -15.40974 -14.96455 -14.68953 -14.54111 -14.12949 -13.64830 -13.37231 -12.99581 -12.88989 -12.78311 -12.63609 -12.32307 -12.12027 -12.00624 -11.29841 -11.18668 -11.15435 -11.04826 -10.72417 -10.60830 -10.44730 -10.34395 -9.82199 -9.73947 -9.31649 -9.16589 -8.53026 -8.48510 -8.12559 -7.33248 -6.00794 -3.96495 2.00356 2.63070 3.00028 3.31413 3.36999 3.40098 4.44753 4.52758 4.73380 4.85143 5.01280 5.06181 5.16886 5.25104 5.32407 5.43192 5.57048 5.66401 5.72774 5.84547 5.95227 5.96615 6.03789 6.18341 6.22626 6.35434 6.46215 6.64584 6.67000 6.73676 6.84703 6.90892 6.95531 7.00666 7.11643 7.46380 7.68944 7.73851 7.86811 7.96936 8.11269 8.71907 9.10504 9.61885 11.12624 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.015004 B = 0.008232 C = 0.007057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.701124 B = 3400.398067 C = 3966.785978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.056 3.944 3 N -0.503 5.503 4 C 0.156 3.844 5 C -0.503 4.503 6 H 0.080 0.920 7 C 0.069 3.931 8 N -0.901 5.901 9 Si 0.869 3.131 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.125 3.875 14 H 0.074 0.926 15 C -0.253 4.253 16 C 0.063 3.937 17 N -0.302 5.302 18 N -0.383 5.383 19 C 0.105 3.895 20 C 0.050 3.950 21 C 0.097 3.903 22 H 0.084 0.916 23 C -0.133 4.133 24 N -0.839 5.839 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.046 0.954 28 H 0.082 0.918 29 H 0.019 0.981 30 H -0.009 1.009 31 H 0.030 0.970 32 H 0.262 0.738 33 H 0.186 0.814 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.166 0.834 38 H 0.041 0.959 39 H 0.049 0.951 40 H 0.084 0.916 41 H 0.329 0.671 42 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.906 -0.533 16.778 18.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.072 4.072 3 N -0.225 5.225 4 C 0.030 3.970 5 C -0.541 4.541 6 H 0.098 0.902 7 C -0.132 4.132 8 N -0.540 5.540 9 Si 0.696 3.304 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.192 1.192 13 C 0.012 3.988 14 H 0.092 0.908 15 C -0.266 4.266 16 C -0.123 4.123 17 N -0.123 5.123 18 N -0.166 5.166 19 C -0.036 4.036 20 C -0.097 4.097 21 C -0.014 4.014 22 H 0.102 0.898 23 C -0.191 4.191 24 N -0.367 5.367 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.038 0.962 30 H 0.009 0.991 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.202 0.798 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.183 0.817 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.103 0.897 41 H 0.141 0.859 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.770 -0.096 16.692 18.013 hybrid contribution 0.430 -1.283 1.043 1.708 sum -6.340 -1.379 17.734 18.884 Atomic orbital electron populations 1.21762 0.96485 1.00399 1.01245 1.21942 0.94267 0.90240 1.00745 1.62333 1.20958 1.16056 1.23183 1.20455 0.84006 0.95393 0.97141 1.21064 0.94273 1.48271 0.90495 0.90151 1.24876 0.98547 0.95104 0.94708 1.69889 1.23744 1.50850 1.09561 0.86994 0.83804 0.78720 0.80838 1.20381 1.21158 1.19197 1.21072 0.95945 0.95096 0.86689 0.90842 1.21088 0.95032 1.10810 0.99669 1.24259 0.94985 0.97487 0.95594 1.77395 1.08537 1.20024 1.06365 1.48450 1.04124 1.45098 1.18906 1.21749 1.04075 0.96102 0.81722 1.22271 0.92723 1.00039 0.94647 1.21482 1.01230 0.89534 0.89192 0.89766 1.21683 0.97204 1.00092 1.00118 1.59145 1.10440 1.62145 1.04964 0.94093 0.91880 0.93492 0.89921 0.96247 0.99131 0.95183 0.92774 0.79763 0.91185 0.89583 0.89899 0.81691 0.94038 0.93195 0.89732 0.85922 0.85244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.86 37.16 0.37 -1.73 16 2 C 0.06 1.04 5.40 -3.82 -0.02 1.02 16 3 N -0.50 -9.75 3.57 -229.48 -0.82 -10.56 16 4 C 0.16 3.60 1.78 -4.98 -0.01 3.59 16 5 C -0.50 -13.90 9.10 -34.44 -0.31 -14.21 16 6 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 9 Si 0.87 21.57 27.47 -169.99 -4.67 16.90 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.27 -6.23 5.96 56.52 0.34 -5.90 16 13 C 0.12 1.98 1.86 -68.86 -0.13 1.86 16 14 H 0.07 1.07 6.48 -51.93 -0.34 0.73 16 15 C -0.25 -3.99 2.48 -105.05 -0.26 -4.25 16 16 C 0.06 1.16 9.47 -17.36 -0.16 0.99 16 17 N -0.30 -5.33 12.58 30.63 0.39 -4.95 16 18 N -0.38 -5.25 4.01 -68.17 -0.27 -5.53 16 19 C 0.11 0.91 11.47 59.85 0.69 1.60 16 20 C 0.05 0.65 11.38 -17.22 -0.20 0.46 16 21 C 0.10 1.55 2.77 -67.71 -0.19 1.37 16 22 H 0.08 1.59 6.08 -51.93 -0.32 1.28 16 23 C -0.13 -2.09 9.38 37.16 0.35 -1.74 16 24 N -0.84 -11.39 9.20 -4.67 -0.04 -11.43 16 25 H 0.04 0.54 6.82 -51.93 -0.35 0.18 16 26 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 1.75 7.37 -51.93 -0.38 1.37 16 29 H 0.02 0.36 7.10 -51.93 -0.37 -0.01 16 30 H -0.01 -0.21 5.44 -51.93 -0.28 -0.50 16 31 H 0.03 0.71 3.98 -51.93 -0.21 0.50 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.19 3.75 5.26 -52.49 -0.28 3.47 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.17 1.61 8.06 -52.49 -0.42 1.18 16 38 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.08 1.53 7.51 -51.93 -0.39 1.14 16 41 H 0.33 3.82 8.98 -39.29 -0.35 3.47 16 42 H 0.34 4.59 7.93 -39.29 -0.31 4.28 16 LS Contribution 325.78 15.07 4.91 4.91 Total: -1.00 -31.37 325.78 -6.30 -37.67 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -6.58 Total: 8.92 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: 0.02 Total: -9.19 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: 0.02 Total: -59.21 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.37 -6.30 -37.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043231695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.966 kcal (2) G-P(sol) polarization free energy of solvation -31.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds