Wall clock time and date at job start Mon Mar 30 2020 04:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.47139 * 2 1 4 4 C 1.46895 * 111.00041 * 195.79235 * 3 2 1 5 5 C 1.50703 * 109.47225 * 76.14759 * 4 3 2 6 6 H 1.07996 * 119.99730 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00086 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00002 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 120.00025 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47195 * 89.99780 * 9 7 5 11 11 H 1.48492 * 109.46931 * 210.00116 * 9 7 5 12 12 H 1.48500 * 109.47109 * 329.99737 * 9 7 5 13 13 C 1.46899 * 111.00220 * 71.83682 * 3 2 1 14 14 H 1.09004 * 109.47188 * 308.94977 * 13 3 2 15 15 C 1.50700 * 109.47024 * 68.94539 * 13 3 2 16 16 C 1.39867 * 126.04027 * 58.90831 * 15 13 3 17 17 N 1.30843 * 108.20444 * 179.82032 * 16 15 13 18 18 N 1.40085 * 108.20157 * 0.43638 * 17 16 15 19 19 C 1.46500 * 126.03567 * 179.74061 * 18 17 16 20 20 C 1.34950 * 107.92684 * 359.72189 * 18 17 16 21 21 C 1.53002 * 109.47340 * 188.94658 * 13 3 2 22 22 H 1.09005 * 109.46625 * 301.88878 * 21 13 3 23 23 C 1.53000 * 109.47123 * 61.88940 * 21 13 3 24 24 N 1.46897 * 109.46819 * 181.89246 * 21 13 3 25 25 H 1.09003 * 109.47376 * 294.52599 * 1 2 3 26 26 H 1.09007 * 109.47144 * 54.52569 * 1 2 3 27 27 H 1.09001 * 109.47207 * 174.52221 * 1 2 3 28 28 H 1.08995 * 109.46982 * 240.00067 * 2 1 3 29 29 H 1.08993 * 109.46960 * 119.99909 * 2 1 3 30 30 H 1.09003 * 109.47488 * 316.14702 * 4 3 2 31 31 H 1.09004 * 109.47420 * 196.14887 * 4 3 2 32 32 H 0.97000 * 119.99754 * 180.02562 * 8 7 5 33 33 H 1.08002 * 125.89962 * 359.97438 * 16 15 13 34 34 H 1.08999 * 109.47158 * 269.97448 * 19 18 17 35 35 H 1.08998 * 109.46946 * 29.97780 * 19 18 17 36 36 H 1.08995 * 109.47211 * 149.97852 * 19 18 17 37 37 H 1.07993 * 126.12646 * 180.02562 * 20 18 17 38 38 H 1.09001 * 109.46916 * 64.99975 * 23 21 13 39 39 H 1.09000 * 109.46939 * 184.99924 * 23 21 13 40 40 H 1.08994 * 109.47088 * 305.00183 * 23 21 13 41 41 H 1.00900 * 111.00362 * 296.04113 * 24 21 13 42 42 H 1.00901 * 111.00480 * 60.00433 * 24 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4393 1.4414 -0.3732 5 6 3.5756 1.2474 -1.8615 6 1 2.6955 1.0975 -2.4693 7 6 4.8237 1.2621 -2.4472 8 7 4.9425 1.0933 -3.7461 9 14 6.3458 1.5220 -1.3960 10 1 6.8544 0.2077 -0.9279 11 1 7.3933 2.2001 -2.2009 12 1 5.9996 2.3649 -0.2234 13 6 1.7921 2.0239 1.3031 14 1 0.7508 1.8905 1.5963 15 6 2.6895 1.3921 2.3358 16 6 4.0867 1.3428 2.2924 17 7 4.5072 0.7192 3.3631 18 7 3.3887 0.3427 4.1178 19 6 3.4121 -0.3832 5.3901 20 6 2.2858 0.7671 3.4661 21 6 2.1057 3.5179 1.2003 22 1 3.1374 3.6510 0.8747 23 6 1.1628 4.1683 0.1861 24 7 1.9217 4.1482 2.5144 25 1 -0.3634 0.4266 0.9350 26 1 -0.3634 0.5964 -0.8370 27 1 -0.3634 -1.0230 -0.0981 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.9835 0.6533 0.1473 31 1 3.8501 2.4118 -0.0942 32 1 5.8206 1.1033 -4.1581 33 1 4.7108 1.7513 1.5114 34 1 3.3749 -1.4554 5.1974 35 1 4.3285 -0.1425 5.9289 36 1 2.5503 -0.0920 5.9905 37 1 1.2641 0.6325 3.7890 38 1 0.1385 4.1133 0.5549 39 1 1.4433 5.2124 0.0468 40 1 1.2348 3.6426 -0.7660 41 1 0.9583 4.0949 2.8094 42 1 2.5339 3.7358 3.2023 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043231695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:11 Heat of formation + Delta-G solvation = 67.821493 kcal Electronic energy + Delta-G solvation = -21853.755740 eV Core-core repulsion = 18870.004434 eV Total energy + Delta-G solvation = -2983.751306 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.43136 -39.41983 -36.12388 -34.65122 -34.05482 -31.84838 -31.56843 -29.87118 -28.85553 -27.64290 -25.76845 -24.15520 -22.39981 -21.88868 -21.64351 -20.25165 -18.96735 -17.64231 -17.01767 -16.62836 -16.57322 -16.01400 -15.93109 -15.53884 -15.11849 -14.63223 -14.54696 -14.28368 -13.98342 -13.85220 -13.52141 -13.40134 -13.29244 -12.94993 -12.69652 -12.56097 -12.46352 -12.27111 -12.05540 -11.86327 -11.81511 -11.73920 -11.33816 -11.15012 -10.75537 -10.36490 -9.62062 -9.29018 -8.88388 -8.26304 -6.25356 0.91415 1.29505 1.31144 1.39111 1.69792 1.73949 2.31945 3.07609 3.32143 3.57471 3.91125 3.91734 4.11203 4.28164 4.31798 4.34740 4.41324 4.43181 4.61274 4.66769 4.69808 4.75401 4.76759 4.89454 4.92900 5.03231 5.10905 5.16169 5.19743 5.32013 5.42820 5.50003 5.56614 5.64206 5.65751 6.07020 6.16548 6.31211 6.52288 6.69181 6.75083 6.78054 6.82327 7.37138 8.90772 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.015004 B = 0.008232 C = 0.007057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.701124 B = 3400.398067 C = 3966.785978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.060 3.940 3 N -0.514 5.514 4 C 0.179 3.821 5 C -0.502 4.502 6 H 0.040 0.960 7 C 0.013 3.987 8 N -0.948 5.948 9 Si 0.930 3.070 10 H -0.277 1.277 11 H -0.281 1.281 12 H -0.249 1.249 13 C 0.134 3.866 14 H 0.101 0.899 15 C -0.273 4.273 16 C 0.038 3.962 17 N -0.336 5.336 18 N -0.374 5.374 19 C 0.093 3.907 20 C 0.075 3.925 21 C 0.103 3.897 22 H 0.048 0.952 23 C -0.127 4.127 24 N -0.832 5.832 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.040 0.960 29 H 0.022 0.978 30 H -0.018 1.018 31 H 0.028 0.972 32 H 0.264 0.736 33 H 0.154 0.846 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.123 0.877 37 H 0.213 0.787 38 H 0.067 0.933 39 H 0.048 0.952 40 H 0.053 0.947 41 H 0.346 0.654 42 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.797 -0.662 20.628 22.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.069 4.069 3 N -0.236 5.236 4 C 0.051 3.949 5 C -0.540 4.540 6 H 0.058 0.942 7 C -0.184 4.184 8 N -0.590 5.590 9 Si 0.755 3.245 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.173 1.173 13 C 0.022 3.978 14 H 0.119 0.881 15 C -0.286 4.286 16 C -0.147 4.147 17 N -0.159 5.159 18 N -0.156 5.156 19 C -0.046 4.046 20 C -0.073 4.073 21 C -0.009 4.009 22 H 0.066 0.934 23 C -0.185 4.185 24 N -0.361 5.361 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.059 0.941 29 H 0.040 0.960 30 H -0.001 1.001 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.171 0.829 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.141 0.859 37 H 0.230 0.770 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.160 0.840 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.675 -0.223 20.579 22.334 hybrid contribution 0.919 -1.297 -0.069 1.591 sum -7.756 -1.520 20.510 21.980 Atomic orbital electron populations 1.21666 0.93144 1.01677 1.02227 1.21892 0.96878 0.89299 0.98799 1.62229 1.18234 1.16936 1.26246 1.20039 0.86613 0.94650 0.93569 1.21361 0.92847 1.46941 0.92889 0.94177 1.25667 1.01827 0.95163 0.95772 1.70035 1.24573 1.52881 1.11462 0.85996 0.79884 0.78908 0.79730 1.20284 1.20664 1.17292 1.21053 0.97399 0.94420 0.84924 0.88076 1.20974 0.93754 1.12731 1.01129 1.23929 0.96097 0.98874 0.95758 1.77302 1.10753 1.20928 1.06873 1.48836 1.03300 1.43939 1.19573 1.22209 1.06137 0.96328 0.79935 1.22846 0.94291 0.97201 0.92959 1.21263 0.99128 0.90038 0.90458 0.93427 1.21588 0.98731 0.99492 0.98715 1.59023 1.11685 1.61576 1.03826 0.91240 0.93063 0.91708 0.94115 0.95955 1.00089 0.95378 0.92698 0.82884 0.90084 0.89394 0.85886 0.77032 0.91414 0.93294 0.92810 0.84047 0.84984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 9.86 71.98 0.71 -2.82 16 2 C 0.06 2.18 5.40 86.30 0.47 2.64 16 3 N -0.51 -19.98 3.57 -879.93 -3.14 -23.12 16 4 C 0.18 8.50 1.78 85.56 0.15 8.65 16 5 C -0.50 -29.25 9.10 25.60 0.23 -29.02 16 6 H 0.04 2.60 8.06 -2.91 -0.02 2.58 16 7 C 0.01 0.75 5.47 84.66 0.46 1.22 16 8 N -0.95 -60.53 13.96 21.45 0.30 -60.23 16 9 Si 0.93 46.23 27.47 68.60 1.88 48.11 16 10 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 11 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 12 H -0.25 -11.55 5.96 99.48 0.59 -10.96 16 13 C 0.13 3.99 1.86 44.17 0.08 4.08 16 14 H 0.10 2.48 6.48 -2.38 -0.02 2.46 16 15 C -0.27 -8.00 2.48 -20.14 -0.05 -8.05 16 16 C 0.04 1.39 9.47 85.23 0.81 2.20 16 17 N -0.34 -11.44 12.58 -57.02 -0.72 -12.15 16 18 N -0.37 -8.93 4.01 -369.58 -1.48 -10.41 16 19 C 0.09 1.20 11.47 127.77 1.47 2.67 16 20 C 0.08 1.64 11.38 83.54 0.95 2.59 16 21 C 0.10 3.18 2.77 44.92 0.12 3.31 16 22 H 0.05 1.83 6.08 -2.38 -0.01 1.82 16 23 C -0.13 -3.87 9.38 71.98 0.68 -3.20 16 24 N -0.83 -20.36 9.20 -168.67 -1.55 -21.91 16 25 H 0.07 1.50 6.82 -2.39 -0.02 1.49 16 26 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 27 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.04 1.79 7.37 -2.39 -0.02 1.78 16 29 H 0.02 0.79 7.10 -2.39 -0.02 0.78 16 30 H -0.02 -0.92 5.44 -2.39 -0.01 -0.93 16 31 H 0.03 1.37 3.98 -2.38 -0.01 1.36 16 32 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 33 H 0.15 6.43 5.26 -2.91 -0.02 6.41 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.21 2.56 8.06 -2.91 -0.02 2.54 16 38 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.05 1.97 7.51 -2.39 -0.02 1.95 16 41 H 0.35 6.59 8.98 -89.69 -0.81 5.79 16 42 H 0.34 8.34 7.93 -89.69 -0.71 7.63 16 Total: -1.00 -73.62 325.78 0.77 -72.85 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -0.60 Total: 22.62 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: 6.08 Total: -15.74 kcal Atomic # 7 Polarization: -121.24 SS G_CDS: -6.59 Total: -127.83 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.88 Total: 48.11 kcal Total: -73.62 0.77 -72.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043231695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.669 kcal (2) G-P(sol) polarization free energy of solvation -73.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds