Wall clock time and date at job start Mon Mar 30 2020 04:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47032 * 2 1 4 4 N 1.46905 * 109.47365 * 240.00312 * 2 1 3 5 5 C 1.46895 * 110.99769 * 189.62730 * 4 2 1 6 6 C 1.50697 * 109.47446 * 63.12988 * 5 4 2 7 7 H 1.08005 * 119.99986 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00501 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00293 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 119.99744 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.46866 * 90.00134 * 10 8 6 12 12 H 1.48503 * 109.47254 * 210.00079 * 10 8 6 13 13 H 1.48492 * 109.47246 * 330.00202 * 10 8 6 14 14 C 1.46902 * 110.99817 * 65.67578 * 4 2 1 15 15 H 1.09000 * 109.47557 * 43.67985 * 14 4 2 16 16 C 1.52996 * 109.46879 * 163.67885 * 14 4 2 17 17 N 1.46897 * 109.47323 * 286.85957 * 16 14 4 18 18 C 1.50698 * 109.46825 * 283.68072 * 14 4 2 19 19 C 1.39870 * 126.04009 * 316.95637 * 18 14 4 20 20 N 1.30838 * 108.20399 * 179.82474 * 19 18 14 21 21 N 1.40087 * 108.20221 * 0.43722 * 20 19 18 22 22 C 1.46498 * 126.03485 * 179.74148 * 21 20 19 23 23 C 1.34952 * 107.92657 * 359.72112 * 21 20 19 24 24 H 1.09008 * 109.47415 * 50.45308 * 1 2 3 25 25 H 1.09007 * 109.47186 * 170.44890 * 1 2 3 26 26 H 1.08999 * 109.47672 * 290.44732 * 1 2 3 27 27 H 1.08999 * 109.47422 * 120.00179 * 2 1 3 28 28 H 1.09007 * 109.46725 * 69.36264 * 3 2 1 29 29 H 1.08999 * 109.47009 * 189.35762 * 3 2 1 30 30 H 1.08989 * 109.47279 * 309.35931 * 3 2 1 31 31 H 1.09006 * 109.47139 * 183.12946 * 5 4 2 32 32 H 1.08995 * 109.47777 * 303.12575 * 5 4 2 33 33 H 0.97003 * 120.00225 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.47145 * 46.86463 * 16 14 4 35 35 H 1.09002 * 109.46980 * 166.85576 * 16 14 4 36 36 H 1.00901 * 111.00334 * 180.02562 * 17 16 14 37 37 H 1.00904 * 110.99972 * 303.95406 * 17 16 14 38 38 H 1.08003 * 125.89979 * 359.97438 * 19 18 14 39 39 H 1.08998 * 109.47544 * 269.97347 * 22 21 20 40 40 H 1.09002 * 109.47501 * 29.98128 * 22 21 20 41 41 H 1.09007 * 109.47055 * 149.97295 * 22 21 20 42 42 H 1.07999 * 126.12284 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 3.4699 -0.9138 -1.1242 6 6 3.7801 -1.8200 0.0392 7 1 2.9799 -2.1937 0.6610 8 6 5.0853 -2.1719 0.3101 9 7 5.3559 -2.9631 1.3252 10 14 6.4693 -1.5262 -0.7655 11 1 6.9638 -0.2384 -0.2157 12 1 7.5789 -2.5128 -0.7899 13 1 5.9653 -1.3139 -2.1461 14 6 1.6626 0.0476 -2.4172 15 1 1.8492 1.1106 -2.2644 16 6 2.5104 -0.4560 -3.5870 17 7 3.8890 0.0285 -3.4369 18 6 0.2031 -0.1669 -2.7255 19 6 -0.4827 -1.3838 -2.6546 20 7 -1.7292 -1.1707 -2.9905 21 7 -1.8738 0.1889 -3.2959 22 6 -3.1093 0.8493 -3.7240 23 6 -0.6740 0.7827 -3.1255 24 1 -0.3634 0.6544 -0.7925 25 1 -0.3634 -1.0135 -0.1705 26 1 -0.3634 0.3590 0.9629 27 1 1.8933 -0.5138 0.8899 28 1 1.8195 1.9058 0.9618 29 1 3.1170 1.4471 -0.1671 30 1 1.5466 2.0023 -0.7945 31 1 3.8150 -1.3779 -2.0482 32 1 3.9766 0.0412 -0.9861 33 1 6.2742 -3.2111 1.5156 34 1 2.5071 -1.5459 -3.5954 35 1 2.0945 -0.0843 -4.5235 36 1 4.4694 -0.2905 -4.1981 37 1 3.9126 1.0345 -3.3617 38 1 -0.0575 -2.3348 -2.3694 39 1 -3.1800 0.8183 -4.8113 40 1 -3.9661 0.3344 -3.2893 41 1 -3.1013 1.8869 -3.3899 42 1 -0.4535 1.8286 -3.2802 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043231899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:25 Heat of formation + Delta-G solvation = 112.087792 kcal Electronic energy + Delta-G solvation = -21801.743125 eV Core-core repulsion = 18819.911350 eV Total energy + Delta-G solvation = -2981.831775 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.13353 -38.20915 -34.28361 -33.18056 -32.39677 -30.72543 -30.28505 -28.08279 -26.62025 -26.11561 -24.92719 -22.16307 -21.32653 -20.80610 -20.07990 -18.30017 -16.70850 -16.37706 -15.53769 -15.48623 -15.03146 -14.61766 -14.16898 -13.92753 -13.63826 -13.39875 -12.90652 -12.83540 -12.72978 -12.45039 -12.37682 -11.99649 -11.88368 -11.46139 -11.16160 -10.99904 -10.85554 -10.58247 -10.44792 -10.28839 -9.96004 -9.70580 -9.46577 -9.12978 -9.08623 -8.36334 -7.98144 -7.81280 -7.03754 -5.81557 -3.75443 2.08167 2.69743 3.13962 3.48944 3.55850 3.70127 4.55019 4.67878 4.84489 4.96100 5.01986 5.04186 5.26371 5.42946 5.53957 5.58831 5.65707 5.76312 5.82392 5.85471 5.94480 6.03480 6.13641 6.19471 6.31760 6.41336 6.43513 6.59888 6.67277 6.95246 6.97179 7.08212 7.18118 7.46155 7.49679 7.54035 7.77118 7.96690 8.06341 8.23488 8.43817 8.95803 9.28395 9.83386 11.31807 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.027445 B = 0.006084 C = 0.005690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.964475 B = 4600.855751 C = 4919.678557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.084 3.916 3 C -0.178 4.178 4 N -0.509 5.509 5 C 0.164 3.836 6 C -0.505 4.505 7 H 0.072 0.928 8 C 0.063 3.937 9 N -0.913 5.913 10 Si 0.871 3.129 11 H -0.287 1.287 12 H -0.299 1.299 13 H -0.242 1.242 14 C 0.153 3.847 15 H 0.043 0.957 16 C 0.073 3.927 17 N -0.835 5.835 18 C -0.194 4.194 19 C 0.083 3.917 20 N -0.309 5.309 21 N -0.386 5.386 22 C 0.107 3.893 23 C 0.036 3.964 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.036 0.964 27 H 0.094 0.906 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.068 0.932 32 H -0.011 1.011 33 H 0.258 0.742 34 H 0.083 0.917 35 H 0.018 0.982 36 H 0.335 0.665 37 H 0.330 0.670 38 H 0.186 0.814 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.993 11.080 -11.753 20.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 C -0.236 4.236 4 N -0.233 5.233 5 C 0.038 3.962 6 C -0.544 4.544 7 H 0.090 0.910 8 C -0.136 4.136 9 N -0.553 5.553 10 Si 0.699 3.301 11 H -0.214 1.214 12 H -0.226 1.226 13 H -0.165 1.165 14 C 0.042 3.958 15 H 0.061 0.939 16 C -0.058 4.058 17 N -0.364 5.364 18 C -0.207 4.207 19 C -0.103 4.103 20 N -0.130 5.130 21 N -0.169 5.169 22 C -0.035 4.035 23 C -0.110 4.110 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.112 0.888 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.006 0.994 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.036 0.964 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.203 0.797 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.367 9.654 -11.254 19.963 hybrid contribution 1.836 2.105 -1.045 2.982 sum -11.531 11.759 -12.300 20.555 Atomic orbital electron populations 1.22084 0.96339 1.01724 0.99618 1.21559 0.93529 0.91612 0.95784 1.22397 1.02015 0.99050 1.00184 1.62274 1.17983 1.44381 0.98676 1.20503 0.81703 0.95191 0.98783 1.21315 0.93338 1.27793 1.11934 0.90969 1.24873 0.98624 0.95044 0.95105 1.69934 1.19231 1.36879 1.29286 0.86881 0.81667 0.77857 0.83679 1.21359 1.22589 1.16499 1.19861 0.87984 0.96146 0.91781 0.93933 1.21830 0.87590 1.01521 0.94887 1.59299 1.10515 1.15573 1.51007 1.20010 0.97085 0.92762 1.10830 1.23804 0.89830 0.99782 0.96917 1.77359 1.19861 0.92704 1.23096 1.48316 1.08031 1.06690 1.53858 1.21702 0.84514 0.96947 1.00293 1.22110 0.85969 0.98999 1.03901 0.93124 0.92353 0.94491 0.88781 0.93513 0.91958 0.93990 0.91412 0.99362 0.93231 0.89887 0.96364 0.85281 0.85825 0.79709 0.91410 0.89680 0.90090 0.81996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 7.82 37.15 0.29 -2.08 16 2 C 0.08 1.62 2.76 -67.71 -0.19 1.43 16 3 C -0.18 -3.07 8.36 37.16 0.31 -2.76 16 4 N -0.51 -10.05 4.22 -221.53 -0.93 -10.98 16 5 C 0.16 3.80 2.25 -4.98 -0.01 3.78 16 6 C -0.51 -14.31 8.91 -34.44 -0.31 -14.61 16 7 H 0.07 2.25 7.21 -52.48 -0.38 1.88 16 8 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 9 N -0.91 -28.72 13.96 55.43 0.77 -27.94 16 10 Si 0.87 21.77 27.47 -169.99 -4.67 17.10 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 13 H -0.24 -5.56 6.54 56.52 0.37 -5.19 16 14 C 0.15 2.44 2.08 -68.87 -0.14 2.30 16 15 H 0.04 0.67 5.49 -51.93 -0.29 0.39 16 16 C 0.07 1.10 5.54 -3.83 -0.02 1.08 16 17 N -0.83 -12.63 6.39 -10.37 -0.07 -12.70 16 18 C -0.19 -2.86 2.48 -105.05 -0.26 -3.12 16 19 C 0.08 1.31 10.04 -17.36 -0.17 1.14 16 20 N -0.31 -4.78 12.58 30.63 0.39 -4.40 16 21 N -0.39 -4.84 4.01 -68.16 -0.27 -5.12 16 22 C 0.11 0.84 11.47 59.85 0.69 1.53 16 23 C 0.04 0.44 10.26 -17.22 -0.18 0.27 16 24 H 0.05 0.80 4.99 -51.92 -0.26 0.54 16 25 H 0.06 1.06 6.93 -51.93 -0.36 0.70 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.09 2.15 6.43 -51.93 -0.33 1.82 16 28 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 29 H 0.06 1.19 6.29 -51.93 -0.33 0.86 16 30 H 0.04 0.64 6.45 -51.94 -0.34 0.30 16 31 H 0.07 1.59 4.12 -51.93 -0.21 1.38 16 32 H -0.01 -0.27 5.48 -51.93 -0.28 -0.55 16 33 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 34 H 0.08 1.41 7.74 -51.93 -0.40 1.01 16 35 H 0.02 0.24 8.07 -51.93 -0.42 -0.17 16 36 H 0.33 4.47 9.08 -39.29 -0.36 4.11 16 37 H 0.33 4.43 8.93 -39.29 -0.35 4.08 16 38 H 0.19 3.01 8.06 -52.48 -0.42 2.58 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 42 H 0.16 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 319.16 15.07 4.81 4.81 Total: -1.00 -33.11 319.16 -6.50 -39.60 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -6.43 Total: 8.91 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -0.09 Total: -9.28 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: -0.12 Total: -61.14 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.11 -6.50 -39.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043231899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.690 kcal (2) G-P(sol) polarization free energy of solvation -33.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds