Wall clock time and date at job start Mon Mar 30 2020 04:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47032 * 2 1 4 4 N 1.46905 * 109.47365 * 240.00312 * 2 1 3 5 5 C 1.46895 * 110.99769 * 189.62730 * 4 2 1 6 6 C 1.50697 * 109.47446 * 63.12988 * 5 4 2 7 7 H 1.08005 * 119.99986 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00501 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00293 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 119.99744 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.46866 * 90.00134 * 10 8 6 12 12 H 1.48503 * 109.47254 * 210.00079 * 10 8 6 13 13 H 1.48492 * 109.47246 * 330.00202 * 10 8 6 14 14 C 1.46902 * 110.99817 * 65.67578 * 4 2 1 15 15 H 1.09000 * 109.47557 * 43.67985 * 14 4 2 16 16 C 1.52996 * 109.46879 * 163.67885 * 14 4 2 17 17 N 1.46897 * 109.47323 * 286.85957 * 16 14 4 18 18 C 1.50698 * 109.46825 * 283.68072 * 14 4 2 19 19 C 1.39870 * 126.04009 * 316.95637 * 18 14 4 20 20 N 1.30838 * 108.20399 * 179.82474 * 19 18 14 21 21 N 1.40087 * 108.20221 * 0.43722 * 20 19 18 22 22 C 1.46498 * 126.03485 * 179.74148 * 21 20 19 23 23 C 1.34952 * 107.92657 * 359.72112 * 21 20 19 24 24 H 1.09008 * 109.47415 * 50.45308 * 1 2 3 25 25 H 1.09007 * 109.47186 * 170.44890 * 1 2 3 26 26 H 1.08999 * 109.47672 * 290.44732 * 1 2 3 27 27 H 1.08999 * 109.47422 * 120.00179 * 2 1 3 28 28 H 1.09007 * 109.46725 * 69.36264 * 3 2 1 29 29 H 1.08999 * 109.47009 * 189.35762 * 3 2 1 30 30 H 1.08989 * 109.47279 * 309.35931 * 3 2 1 31 31 H 1.09006 * 109.47139 * 183.12946 * 5 4 2 32 32 H 1.08995 * 109.47777 * 303.12575 * 5 4 2 33 33 H 0.97003 * 120.00225 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.47145 * 46.86463 * 16 14 4 35 35 H 1.09002 * 109.46980 * 166.85576 * 16 14 4 36 36 H 1.00901 * 111.00334 * 180.02562 * 17 16 14 37 37 H 1.00904 * 110.99972 * 303.95406 * 17 16 14 38 38 H 1.08003 * 125.89979 * 359.97438 * 19 18 14 39 39 H 1.08998 * 109.47544 * 269.97347 * 22 21 20 40 40 H 1.09002 * 109.47501 * 29.98128 * 22 21 20 41 41 H 1.09007 * 109.47055 * 149.97295 * 22 21 20 42 42 H 1.07999 * 126.12284 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 3.4699 -0.9138 -1.1242 6 6 3.7801 -1.8200 0.0392 7 1 2.9799 -2.1937 0.6610 8 6 5.0853 -2.1719 0.3101 9 7 5.3559 -2.9631 1.3252 10 14 6.4693 -1.5262 -0.7655 11 1 6.9638 -0.2384 -0.2157 12 1 7.5789 -2.5128 -0.7899 13 1 5.9653 -1.3139 -2.1461 14 6 1.6626 0.0476 -2.4172 15 1 1.8492 1.1106 -2.2644 16 6 2.5104 -0.4560 -3.5870 17 7 3.8890 0.0285 -3.4369 18 6 0.2031 -0.1669 -2.7255 19 6 -0.4827 -1.3838 -2.6546 20 7 -1.7292 -1.1707 -2.9905 21 7 -1.8738 0.1889 -3.2959 22 6 -3.1093 0.8493 -3.7240 23 6 -0.6740 0.7827 -3.1255 24 1 -0.3634 0.6544 -0.7925 25 1 -0.3634 -1.0135 -0.1705 26 1 -0.3634 0.3590 0.9629 27 1 1.8933 -0.5138 0.8899 28 1 1.8195 1.9058 0.9618 29 1 3.1170 1.4471 -0.1671 30 1 1.5466 2.0023 -0.7945 31 1 3.8150 -1.3779 -2.0482 32 1 3.9766 0.0412 -0.9861 33 1 6.2742 -3.2111 1.5156 34 1 2.5071 -1.5459 -3.5954 35 1 2.0945 -0.0843 -4.5235 36 1 4.4694 -0.2905 -4.1981 37 1 3.9126 1.0345 -3.3617 38 1 -0.0575 -2.3348 -2.3694 39 1 -3.1800 0.8183 -4.8113 40 1 -3.9661 0.3344 -3.2893 41 1 -3.1013 1.8869 -3.3899 42 1 -0.4535 1.8286 -3.2802 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043231899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:24 Heat of formation + Delta-G solvation = 85.987417 kcal Electronic energy + Delta-G solvation = -21802.874922 eV Core-core repulsion = 18819.911350 eV Total energy + Delta-G solvation = -2982.963572 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.21083 -39.63493 -35.57507 -34.72025 -33.95789 -31.94186 -31.89990 -29.41006 -28.01471 -27.49848 -26.16475 -23.71972 -22.89184 -21.86198 -21.32351 -19.72181 -18.58336 -17.62835 -16.88692 -16.79492 -16.23570 -15.94178 -15.69973 -15.16820 -15.06353 -14.77303 -14.40098 -14.33520 -13.76077 -13.59774 -13.48139 -13.42622 -13.08142 -12.97616 -12.74142 -12.53629 -12.33835 -12.16530 -12.03265 -11.77130 -11.57224 -11.31536 -11.18168 -11.08340 -10.58743 -10.15212 -9.15098 -9.00826 -8.59642 -8.09774 -6.08104 1.08133 1.48847 1.51533 1.73257 1.84637 1.98768 2.55512 3.27059 3.40989 3.75880 3.98625 4.12255 4.21340 4.34553 4.45978 4.47591 4.52313 4.55372 4.59810 4.69128 4.76303 4.77424 4.85910 4.92450 5.00877 5.07751 5.14882 5.22758 5.38009 5.42245 5.52192 5.65425 5.73687 5.82025 5.98788 6.24497 6.31703 6.40783 6.75265 6.77711 6.89601 7.00892 7.07684 7.55739 9.07282 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.027445 B = 0.006084 C = 0.005690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.964475 B = 4600.855751 C = 4919.678557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.083 3.917 3 C -0.168 4.168 4 N -0.525 5.525 5 C 0.185 3.815 6 C -0.506 4.506 7 H 0.022 0.978 8 C -0.004 4.004 9 N -0.966 5.966 10 Si 0.947 3.053 11 H -0.284 1.284 12 H -0.305 1.305 13 H -0.208 1.208 14 C 0.160 3.840 15 H 0.057 0.943 16 C 0.078 3.922 17 N -0.854 5.854 18 C -0.216 4.216 19 C 0.066 3.934 20 N -0.337 5.337 21 N -0.379 5.379 22 C 0.096 3.904 23 C 0.057 3.943 24 H 0.070 0.930 25 H 0.038 0.962 26 H 0.045 0.955 27 H 0.042 0.958 28 H 0.055 0.945 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.072 0.928 32 H -0.011 1.011 33 H 0.258 0.742 34 H 0.057 0.943 35 H 0.044 0.956 36 H 0.346 0.654 37 H 0.342 0.658 38 H 0.164 0.836 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.113 0.887 42 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.857 14.528 -14.572 24.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.026 4.026 3 C -0.227 4.227 4 N -0.249 5.249 5 C 0.058 3.942 6 C -0.544 4.544 7 H 0.040 0.960 8 C -0.198 4.198 9 N -0.609 5.609 10 Si 0.771 3.229 11 H -0.210 1.210 12 H -0.232 1.232 13 H -0.130 1.130 14 C 0.050 3.950 15 H 0.074 0.926 16 C -0.052 4.052 17 N -0.385 5.385 18 C -0.229 4.229 19 C -0.119 4.119 20 N -0.159 5.159 21 N -0.162 5.162 22 C -0.044 4.044 23 C -0.090 4.090 24 H 0.089 0.911 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.007 0.993 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.181 0.819 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.132 0.868 42 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -14.280 13.113 -14.100 23.973 hybrid contribution 1.917 1.027 -0.135 2.179 sum -12.364 14.141 -14.235 23.568 Atomic orbital electron populations 1.21916 0.94303 1.01061 1.00766 1.21443 0.95022 0.92420 0.93710 1.22279 1.00810 0.97649 1.01926 1.62113 1.15664 1.46529 1.00578 1.20174 0.84173 0.93672 0.96158 1.21709 0.92118 1.27870 1.12742 0.95998 1.25876 1.01847 0.95428 0.96682 1.70125 1.19789 1.39201 1.31833 0.85714 0.77353 0.76692 0.83122 1.20981 1.23204 1.12952 1.19857 0.89111 0.96117 0.89904 0.92568 1.21718 0.87857 1.00014 0.95645 1.59157 1.10663 1.16721 1.51979 1.19869 0.96732 0.93013 1.13283 1.23582 0.90510 0.99783 0.98000 1.77302 1.19601 0.94942 1.24094 1.48704 1.09527 1.05714 1.52209 1.22128 0.82549 0.98204 1.01512 1.22604 0.85030 1.00100 1.01257 0.91112 0.94331 0.93612 0.94009 0.92560 0.93908 0.90924 0.90991 0.99308 0.93369 0.92445 0.93754 0.84044 0.84419 0.81927 0.89686 0.89665 0.86821 0.77957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.08 7.82 71.98 0.56 -3.52 16 2 C 0.08 3.23 2.76 44.91 0.12 3.35 16 3 C -0.17 -5.49 8.36 71.98 0.60 -4.89 16 4 N -0.52 -20.82 4.22 -854.79 -3.60 -24.42 16 5 C 0.19 8.59 2.25 85.56 0.19 8.79 16 6 C -0.51 -29.98 8.91 25.60 0.23 -29.75 16 7 H 0.02 1.47 7.21 -2.91 -0.02 1.45 16 8 C 0.00 -0.24 5.47 84.65 0.46 0.22 16 9 N -0.97 -63.64 13.96 21.45 0.30 -63.34 16 10 Si 0.95 45.56 27.47 68.60 1.88 47.44 16 11 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 12 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 13 H -0.21 -8.76 6.54 99.48 0.65 -8.11 16 14 C 0.16 4.76 2.08 44.17 0.09 4.86 16 15 H 0.06 1.54 5.49 -2.39 -0.01 1.53 16 16 C 0.08 2.20 5.54 86.30 0.48 2.67 16 17 N -0.85 -23.25 6.39 -186.73 -1.19 -24.45 16 18 C -0.22 -5.87 2.48 -20.14 -0.05 -5.92 16 19 C 0.07 2.09 10.04 85.24 0.86 2.95 16 20 N -0.34 -10.04 12.58 -57.02 -0.72 -10.76 16 21 N -0.38 -8.19 4.01 -369.56 -1.48 -9.67 16 22 C 0.10 1.09 11.47 127.77 1.47 2.56 16 23 C 0.06 1.17 10.26 83.54 0.86 2.03 16 24 H 0.07 2.05 4.99 -2.38 -0.01 2.03 16 25 H 0.04 1.42 6.93 -2.38 -0.02 1.40 16 26 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.04 2.04 6.43 -2.39 -0.02 2.02 16 28 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.04 1.56 6.29 -2.39 -0.02 1.54 16 30 H 0.07 1.92 6.45 -2.39 -0.02 1.90 16 31 H 0.07 3.32 4.12 -2.38 -0.01 3.31 16 32 H -0.01 -0.50 5.48 -2.39 -0.01 -0.51 16 33 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 34 H 0.06 1.91 7.74 -2.39 -0.02 1.89 16 35 H 0.04 1.03 8.07 -2.39 -0.02 1.01 16 36 H 0.35 8.11 9.08 -89.69 -0.81 7.29 16 37 H 0.34 7.89 8.93 -89.69 -0.80 7.09 16 38 H 0.16 5.67 8.06 -2.91 -0.02 5.65 16 39 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 42 H 0.20 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -76.65 319.16 0.42 -76.22 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: -0.63 Total: 25.63 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: 5.87 Total: -16.65 kcal Atomic # 7 Polarization: -125.94 SS G_CDS: -6.70 Total: -132.64 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.88 Total: 47.44 kcal Total: -76.65 0.42 -76.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043231899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.212 kcal (2) G-P(sol) polarization free energy of solvation -76.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds