Wall clock time and date at job start Mon Mar 30 2020 04:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.46795 * 2 1 4 4 N 1.46897 * 109.47204 * 119.99946 * 2 1 3 5 5 C 1.46901 * 111.00102 * 182.02039 * 4 2 1 6 6 C 1.50697 * 109.47370 * 77.92716 * 5 4 2 7 7 H 1.08000 * 120.00173 * 3.86198 * 6 5 4 8 8 C 1.37872 * 120.00436 * 183.86404 * 6 5 4 9 9 N 1.31520 * 119.99821 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00421 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47156 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46969 * 120.00101 * 10 8 6 13 13 H 1.48504 * 109.47621 * 239.99887 * 10 8 6 14 14 C 1.46899 * 111.00051 * 58.06051 * 4 2 1 15 15 H 1.08998 * 109.47271 * 311.38248 * 14 4 2 16 16 C 1.52998 * 109.47234 * 191.37938 * 14 4 2 17 17 N 1.46901 * 109.47318 * 57.31369 * 16 14 4 18 18 C 1.50704 * 109.46446 * 71.38275 * 14 4 2 19 19 C 1.39868 * 126.04264 * 59.87318 * 18 14 4 20 20 N 1.30840 * 108.20192 * 179.72034 * 19 18 14 21 21 N 1.40085 * 108.20414 * 0.23303 * 20 19 18 22 22 C 1.46498 * 126.03506 * 180.02562 * 21 20 19 23 23 C 1.34947 * 107.92628 * 0.02562 * 21 20 19 24 24 H 1.08994 * 109.47420 * 301.22339 * 1 2 3 25 25 H 1.09000 * 109.46803 * 61.22665 * 1 2 3 26 26 H 1.09005 * 109.46898 * 181.21858 * 1 2 3 27 27 H 1.09001 * 109.47158 * 240.00156 * 2 1 3 28 28 H 1.08994 * 109.46915 * 188.09614 * 3 2 1 29 29 H 1.09001 * 109.46738 * 308.09665 * 3 2 1 30 30 H 1.08995 * 109.47123 * 68.09540 * 3 2 1 31 31 H 1.08999 * 109.47181 * 197.92839 * 5 4 2 32 32 H 1.09002 * 109.46673 * 317.92811 * 5 4 2 33 33 H 0.96992 * 120.00482 * 179.97438 * 9 8 6 34 34 H 1.08996 * 109.47141 * 177.32096 * 16 14 4 35 35 H 1.09006 * 109.46913 * 297.31755 * 16 14 4 36 36 H 1.00892 * 111.00465 * 174.69748 * 17 16 14 37 37 H 1.00904 * 110.99777 * 298.65745 * 17 16 14 38 38 H 1.08000 * 125.89665 * 359.97272 * 19 18 14 39 39 H 1.09001 * 109.47466 * 89.97520 * 22 21 20 40 40 H 1.09003 * 109.47129 * 209.97751 * 22 21 20 41 41 H 1.09004 * 109.47275 * 329.97885 * 22 21 20 42 42 H 1.08005 * 126.12449 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4874 -0.6703 1.2578 6 6 3.9510 0.6833 1.7307 7 1 3.2277 1.4297 2.0241 8 6 5.2986 0.9690 1.7889 9 7 6.1795 0.0599 1.4321 10 14 5.8732 2.6471 2.3745 11 1 4.6941 3.4829 2.7155 12 1 6.7291 2.4853 3.5772 13 1 6.6534 3.3071 1.2970 14 6 1.5112 -2.0694 1.2568 15 1 0.4357 -2.0672 1.0799 16 6 1.7998 -2.6626 2.6373 17 7 1.1897 -1.8160 3.6713 18 6 2.1924 -2.9008 0.2005 19 6 3.5676 -3.1345 0.0972 20 7 3.7745 -3.9046 -0.9402 21 7 2.5361 -4.1812 -1.5338 22 6 2.3158 -5.0089 -2.7223 23 6 1.5820 -3.5507 -0.8174 24 1 -0.3634 0.5327 0.8787 25 1 -0.3633 0.4947 -0.9008 26 1 -0.3633 -1.0275 0.0219 27 1 1.8934 -0.5138 -0.8900 28 1 3.1203 1.4461 -0.1447 29 1 1.5632 1.9964 -0.8088 30 1 1.7996 1.9129 0.9534 31 1 3.8350 -1.4361 1.9511 32 1 3.8934 -0.8672 0.2655 33 1 7.1275 0.2609 1.4727 34 1 1.3806 -3.6670 2.6960 35 1 2.8774 -2.7088 2.7948 36 1 1.2917 -2.2312 4.5852 37 1 1.5780 -0.8849 3.6517 38 1 4.3270 -2.7495 0.7616 39 1 2.1610 -6.0447 -2.4203 40 1 1.4357 -4.6507 -3.2565 41 1 3.1869 -4.9471 -3.3747 42 1 0.5209 -3.5658 -1.0180 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043231901.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:27 Heat of formation + Delta-G solvation = 95.778448 kcal Electronic energy + Delta-G solvation = -21851.557661 eV Core-core repulsion = 18869.018659 eV Total energy + Delta-G solvation = -2982.539001 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.93223 -37.89414 -34.15468 -32.83876 -32.66848 -30.87598 -29.87889 -27.98218 -26.53729 -25.55063 -25.05506 -22.67201 -20.96544 -20.39690 -19.94643 -18.53383 -16.55888 -16.33512 -15.29386 -15.12821 -14.79118 -14.43313 -14.25547 -14.09126 -13.63271 -13.42045 -12.94442 -12.60639 -12.38214 -12.15960 -11.99096 -11.81319 -11.70443 -11.32469 -11.12243 -10.92972 -10.72046 -10.63867 -10.49617 -10.15626 -10.07970 -10.00326 -9.29423 -9.07024 -8.85572 -8.35214 -8.04666 -7.87846 -7.11726 -5.96189 -3.92711 2.27837 2.88960 3.31622 3.33665 3.42064 3.46112 4.47414 4.73872 4.98715 5.08695 5.18115 5.26454 5.38004 5.40522 5.65920 5.69232 5.80052 5.90173 5.95638 6.02903 6.10301 6.22569 6.35973 6.40143 6.40711 6.56357 6.65872 6.67486 6.84797 7.09512 7.17502 7.28296 7.37499 7.50382 7.54405 7.79714 7.94115 8.15025 8.19393 8.23509 8.33738 8.66267 9.12941 9.67332 11.13823 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.017330 B = 0.007129 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.341291 B = 3926.668193 C = 4330.995601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.093 3.907 3 C -0.136 4.136 4 N -0.513 5.513 5 C 0.186 3.814 6 C -0.496 4.496 7 H 0.070 0.930 8 C 0.052 3.948 9 N -0.899 5.899 10 Si 0.889 3.111 11 H -0.272 1.272 12 H -0.287 1.287 13 H -0.287 1.287 14 C 0.157 3.843 15 H 0.082 0.918 16 C 0.080 3.920 17 N -0.845 5.845 18 C -0.251 4.251 19 C 0.074 3.926 20 N -0.307 5.307 21 N -0.389 5.389 22 C 0.107 3.893 23 C 0.048 3.952 24 H 0.060 0.940 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.023 0.977 28 H 0.083 0.917 29 H 0.025 0.975 30 H 0.059 0.941 31 H 0.026 0.974 32 H 0.003 0.997 33 H 0.258 0.742 34 H 0.057 0.943 35 H 0.031 0.969 36 H 0.325 0.675 37 H 0.359 0.641 38 H 0.194 0.806 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.470 -7.116 -4.229 13.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.016 4.016 3 C -0.194 4.194 4 N -0.237 5.237 5 C 0.061 3.939 6 C -0.535 4.535 7 H 0.088 0.912 8 C -0.149 4.149 9 N -0.539 5.539 10 Si 0.718 3.282 11 H -0.197 1.197 12 H -0.213 1.213 13 H -0.214 1.214 14 C 0.046 3.954 15 H 0.100 0.900 16 C -0.052 4.052 17 N -0.375 5.375 18 C -0.265 4.265 19 C -0.113 4.113 20 N -0.128 5.128 21 N -0.172 5.172 22 C -0.035 4.035 23 C -0.098 4.098 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.041 0.959 28 H 0.101 0.899 29 H 0.043 0.957 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.021 0.979 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.136 0.864 37 H 0.174 0.826 38 H 0.211 0.789 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.298 -7.691 -5.075 13.818 hybrid contribution 1.199 0.850 0.255 1.492 sum -9.098 -6.841 -4.820 12.362 Atomic orbital electron populations 1.21923 0.96433 1.00697 1.00924 1.21312 0.93249 0.95674 0.91373 1.22078 1.03215 0.94199 0.99873 1.62454 1.13310 1.10979 1.36963 1.20004 0.80712 0.97299 0.95874 1.21427 0.91195 0.99087 1.41784 0.91228 1.24961 0.96943 0.96840 0.96125 1.69947 1.01351 1.33640 1.48975 0.86572 0.78720 0.84683 0.78240 1.19669 1.21324 1.21388 1.20132 0.97810 0.87209 0.90257 0.89975 1.21676 0.96867 0.95127 0.91486 1.58684 1.64751 1.07625 1.06445 1.21076 0.94173 1.08523 1.02681 1.24410 0.96814 0.94460 0.95597 1.77392 1.02142 1.21081 1.12156 1.48434 1.04848 1.40139 1.23797 1.21689 1.02962 0.93884 0.84925 1.22219 0.95196 0.97974 0.94450 0.92125 0.93792 0.93439 0.95921 0.89862 0.95650 0.92154 0.95605 0.97879 0.93191 0.92499 0.95090 0.86432 0.82555 0.78926 0.91421 0.90143 0.89778 0.81828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.97 37.16 0.33 -1.89 16 2 C 0.09 1.76 2.38 -67.71 -0.16 1.60 16 3 C -0.14 -2.72 7.73 37.16 0.29 -2.44 16 4 N -0.51 -10.21 3.57 -221.52 -0.79 -11.00 16 5 C 0.19 4.43 2.49 -4.98 -0.01 4.42 16 6 C -0.50 -12.90 6.47 -34.44 -0.22 -13.12 16 7 H 0.07 1.81 5.90 -52.49 -0.31 1.50 16 8 C 0.05 1.41 5.46 -17.82 -0.10 1.31 16 9 N -0.90 -25.76 13.29 55.43 0.74 -25.03 16 10 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 C 0.16 2.75 2.27 -68.86 -0.16 2.59 16 15 H 0.08 1.37 5.65 -51.93 -0.29 1.08 16 16 C 0.08 1.36 6.03 -3.82 -0.02 1.34 16 17 N -0.85 -13.65 9.58 -10.37 -0.10 -13.74 16 18 C -0.25 -4.46 3.94 -105.05 -0.41 -4.88 16 19 C 0.07 1.49 9.26 -17.36 -0.16 1.33 16 20 N -0.31 -6.03 12.58 30.62 0.39 -5.65 16 21 N -0.39 -6.11 4.01 -68.16 -0.27 -6.38 16 22 C 0.11 1.10 11.47 59.85 0.69 1.79 16 23 C 0.05 0.73 11.38 -17.22 -0.20 0.53 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.69 6.07 -51.93 -0.32 0.37 16 27 H 0.02 0.47 7.50 -51.93 -0.39 0.08 16 28 H 0.08 1.93 6.03 -51.93 -0.31 1.62 16 29 H 0.02 0.44 8.13 -51.93 -0.42 0.01 16 30 H 0.06 1.23 6.89 -51.93 -0.36 0.88 16 31 H 0.03 0.66 4.71 -51.93 -0.24 0.41 16 32 H 0.00 0.09 6.28 -51.93 -0.33 -0.23 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.03 0.59 6.21 -51.93 -0.32 0.27 16 36 H 0.33 4.54 9.08 -39.30 -0.36 4.18 16 37 H 0.36 6.51 8.36 -39.29 -0.33 6.18 16 38 H 0.19 4.34 5.83 -52.49 -0.31 4.04 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.16 1.90 8.06 -52.48 -0.42 1.48 16 LS Contribution 323.59 15.07 4.88 4.88 Total: -1.00 -29.76 323.59 -6.70 -36.47 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -6.38 Total: 11.69 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -0.14 Total: -7.42 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: -0.04 Total: -61.81 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.76 -6.70 -36.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043231901.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.245 kcal (2) G-P(sol) polarization free energy of solvation -29.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds