Wall clock time and date at job start Mon Mar 30 2020 04:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.46795 * 2 1 4 4 N 1.46897 * 109.47204 * 119.99946 * 2 1 3 5 5 C 1.46901 * 111.00102 * 182.02039 * 4 2 1 6 6 C 1.50697 * 109.47370 * 77.92716 * 5 4 2 7 7 H 1.08000 * 120.00173 * 3.86198 * 6 5 4 8 8 C 1.37872 * 120.00436 * 183.86404 * 6 5 4 9 9 N 1.31520 * 119.99821 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00421 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47156 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46969 * 120.00101 * 10 8 6 13 13 H 1.48504 * 109.47621 * 239.99887 * 10 8 6 14 14 C 1.46899 * 111.00051 * 58.06051 * 4 2 1 15 15 H 1.08998 * 109.47271 * 311.38248 * 14 4 2 16 16 C 1.52998 * 109.47234 * 191.37938 * 14 4 2 17 17 N 1.46901 * 109.47318 * 57.31369 * 16 14 4 18 18 C 1.50704 * 109.46446 * 71.38275 * 14 4 2 19 19 C 1.39868 * 126.04264 * 59.87318 * 18 14 4 20 20 N 1.30840 * 108.20192 * 179.72034 * 19 18 14 21 21 N 1.40085 * 108.20414 * 0.23303 * 20 19 18 22 22 C 1.46498 * 126.03506 * 180.02562 * 21 20 19 23 23 C 1.34947 * 107.92628 * 0.02562 * 21 20 19 24 24 H 1.08994 * 109.47420 * 301.22339 * 1 2 3 25 25 H 1.09000 * 109.46803 * 61.22665 * 1 2 3 26 26 H 1.09005 * 109.46898 * 181.21858 * 1 2 3 27 27 H 1.09001 * 109.47158 * 240.00156 * 2 1 3 28 28 H 1.08994 * 109.46915 * 188.09614 * 3 2 1 29 29 H 1.09001 * 109.46738 * 308.09665 * 3 2 1 30 30 H 1.08995 * 109.47123 * 68.09540 * 3 2 1 31 31 H 1.08999 * 109.47181 * 197.92839 * 5 4 2 32 32 H 1.09002 * 109.46673 * 317.92811 * 5 4 2 33 33 H 0.96992 * 120.00482 * 179.97438 * 9 8 6 34 34 H 1.08996 * 109.47141 * 177.32096 * 16 14 4 35 35 H 1.09006 * 109.46913 * 297.31755 * 16 14 4 36 36 H 1.00892 * 111.00465 * 174.69748 * 17 16 14 37 37 H 1.00904 * 110.99777 * 298.65745 * 17 16 14 38 38 H 1.08000 * 125.89665 * 359.97272 * 19 18 14 39 39 H 1.09001 * 109.47466 * 89.97520 * 22 21 20 40 40 H 1.09003 * 109.47129 * 209.97751 * 22 21 20 41 41 H 1.09004 * 109.47275 * 329.97885 * 22 21 20 42 42 H 1.08005 * 126.12449 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4874 -0.6703 1.2578 6 6 3.9510 0.6833 1.7307 7 1 3.2277 1.4297 2.0241 8 6 5.2986 0.9690 1.7889 9 7 6.1795 0.0599 1.4321 10 14 5.8732 2.6471 2.3745 11 1 4.6941 3.4829 2.7155 12 1 6.7291 2.4853 3.5772 13 1 6.6534 3.3071 1.2970 14 6 1.5112 -2.0694 1.2568 15 1 0.4357 -2.0672 1.0799 16 6 1.7998 -2.6626 2.6373 17 7 1.1897 -1.8160 3.6713 18 6 2.1924 -2.9008 0.2005 19 6 3.5676 -3.1345 0.0972 20 7 3.7745 -3.9046 -0.9402 21 7 2.5361 -4.1812 -1.5338 22 6 2.3158 -5.0089 -2.7223 23 6 1.5820 -3.5507 -0.8174 24 1 -0.3634 0.5327 0.8787 25 1 -0.3633 0.4947 -0.9008 26 1 -0.3633 -1.0275 0.0219 27 1 1.8934 -0.5138 -0.8900 28 1 3.1203 1.4461 -0.1447 29 1 1.5632 1.9964 -0.8088 30 1 1.7996 1.9129 0.9534 31 1 3.8350 -1.4361 1.9511 32 1 3.8934 -0.8672 0.2655 33 1 7.1275 0.2609 1.4727 34 1 1.3806 -3.6670 2.6960 35 1 2.8774 -2.7088 2.7948 36 1 1.2917 -2.2312 4.5852 37 1 1.5780 -0.8849 3.6517 38 1 4.3270 -2.7495 0.7616 39 1 2.1610 -6.0447 -2.4203 40 1 1.4357 -4.6507 -3.2565 41 1 3.1869 -4.9471 -3.3747 42 1 0.5209 -3.5658 -1.0180 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043231901.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:26 Heat of formation + Delta-G solvation = 73.388210 kcal Electronic energy + Delta-G solvation = -21852.528574 eV Core-core repulsion = 18869.018659 eV Total energy + Delta-G solvation = -2983.509915 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.28125 -39.41824 -35.60045 -34.68472 -34.01409 -32.29089 -31.45400 -29.53107 -27.84509 -27.13870 -26.47518 -24.42462 -22.41049 -21.77077 -21.40438 -20.00273 -18.50326 -17.62277 -16.79686 -16.46984 -16.36013 -16.05576 -15.72482 -15.52402 -15.12917 -14.83432 -14.25576 -14.03514 -13.65479 -13.59592 -13.43067 -13.28521 -13.12423 -12.95973 -12.67386 -12.57475 -12.46999 -12.18760 -12.14667 -11.88489 -11.62497 -11.49279 -10.94587 -10.92718 -10.44717 -10.26559 -9.41351 -9.23487 -8.78011 -8.05684 -6.08297 0.99907 1.41187 1.43847 1.55148 1.77969 1.86639 2.47279 3.26220 3.45174 3.63310 3.98305 4.07033 4.31414 4.35760 4.38784 4.45356 4.50310 4.55398 4.67776 4.69778 4.72887 4.88409 4.92605 5.03125 5.03868 5.06918 5.22508 5.23647 5.41624 5.41936 5.50072 5.68588 5.71742 5.79183 5.86124 6.25469 6.27614 6.45181 6.60962 6.78897 6.84240 6.89724 7.06398 7.55785 9.03480 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.017330 B = 0.007129 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.341291 B = 3926.668193 C = 4330.995601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.091 3.909 3 C -0.130 4.130 4 N -0.512 5.512 5 C 0.216 3.784 6 C -0.493 4.493 7 H 0.070 0.930 8 C -0.002 4.002 9 N -0.937 5.937 10 Si 0.951 3.049 11 H -0.260 1.260 12 H -0.286 1.286 13 H -0.289 1.289 14 C 0.161 3.839 15 H 0.105 0.895 16 C 0.085 3.915 17 N -0.837 5.837 18 C -0.272 4.272 19 C 0.051 3.949 20 N -0.344 5.344 21 N -0.381 5.381 22 C 0.095 3.905 23 C 0.071 3.929 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.004 0.996 28 H 0.041 0.959 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.004 0.996 32 H -0.035 1.035 33 H 0.256 0.744 34 H 0.076 0.924 35 H -0.002 1.002 36 H 0.338 0.662 37 H 0.348 0.652 38 H 0.153 0.847 39 H 0.089 0.911 40 H 0.118 0.882 41 H 0.081 0.919 42 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.881 -7.295 -5.101 16.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.017 4.017 3 C -0.187 4.187 4 N -0.236 5.236 5 C 0.089 3.911 6 C -0.531 4.531 7 H 0.088 0.912 8 C -0.199 4.199 9 N -0.579 5.579 10 Si 0.778 3.222 11 H -0.184 1.184 12 H -0.212 1.212 13 H -0.216 1.216 14 C 0.051 3.949 15 H 0.123 0.877 16 C -0.047 4.047 17 N -0.367 5.367 18 C -0.286 4.286 19 C -0.134 4.134 20 N -0.167 5.167 21 N -0.163 5.163 22 C -0.045 4.045 23 C -0.077 4.077 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.022 0.978 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.022 0.978 32 H -0.017 1.017 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.016 0.984 36 H 0.150 0.850 37 H 0.161 0.839 38 H 0.170 0.830 39 H 0.108 0.892 40 H 0.137 0.863 41 H 0.100 0.900 42 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -13.726 -7.885 -5.942 16.907 hybrid contribution 2.200 0.807 0.429 2.382 sum -11.526 -7.077 -5.512 14.605 Atomic orbital electron populations 1.21813 0.92791 1.02145 1.02005 1.21375 0.95951 0.94395 0.90028 1.21940 1.00756 0.95556 1.00482 1.62409 1.10412 1.13100 1.37640 1.19480 0.83288 0.95389 0.92919 1.21738 0.91188 0.99861 1.40353 0.91152 1.25733 0.97343 1.00115 0.96688 1.70102 1.01376 1.35587 1.50832 0.85600 0.78378 0.80801 0.77463 1.18427 1.21237 1.21589 1.20173 0.98560 0.85677 0.90467 0.87712 1.21637 0.95064 0.96236 0.91787 1.58703 1.63891 1.06888 1.07181 1.21066 0.93027 1.10253 1.04261 1.23931 0.97530 0.95887 0.96027 1.77277 1.04896 1.21950 1.12597 1.48846 1.03605 1.39521 1.24367 1.22177 1.04539 0.94508 0.83252 1.22843 0.96944 0.95471 0.92463 0.92175 0.91637 0.91718 0.97805 0.93969 0.92906 0.92831 0.97784 1.01690 0.93547 0.90570 0.98373 0.85015 0.83868 0.82956 0.89215 0.86344 0.90012 0.76934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 8.97 71.98 0.65 -2.94 16 2 C 0.09 3.37 2.38 44.92 0.11 3.48 16 3 C -0.13 -5.14 7.73 71.99 0.56 -4.58 16 4 N -0.51 -20.45 3.57 -854.77 -3.05 -23.50 16 5 C 0.22 10.83 2.49 85.56 0.21 11.04 16 6 C -0.49 -26.58 6.47 25.60 0.17 -26.41 16 7 H 0.07 3.72 5.90 -2.91 -0.02 3.70 16 8 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 9 N -0.94 -56.67 13.29 21.45 0.28 -56.38 16 10 Si 0.95 44.73 29.54 68.60 2.03 46.75 16 11 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 12 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 13 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 14 C 0.16 5.49 2.27 44.17 0.10 5.59 16 15 H 0.11 3.11 5.65 -2.39 -0.01 3.10 16 16 C 0.08 2.85 6.03 86.30 0.52 3.37 16 17 N -0.84 -26.23 9.58 -186.72 -1.79 -28.01 16 18 C -0.27 -9.58 3.94 -20.14 -0.08 -9.66 16 19 C 0.05 2.20 9.26 85.24 0.79 2.99 16 20 N -0.34 -13.92 12.58 -57.02 -0.72 -14.64 16 21 N -0.38 -11.21 4.01 -369.56 -1.48 -12.69 16 22 C 0.09 1.63 11.47 127.77 1.47 3.09 16 23 C 0.07 1.94 11.38 83.54 0.95 2.89 16 24 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 1.56 6.07 -2.38 -0.01 1.55 16 27 H 0.00 0.16 7.50 -2.39 -0.02 0.15 16 28 H 0.04 1.99 6.03 -2.39 -0.01 1.98 16 29 H 0.05 1.75 8.13 -2.39 -0.02 1.73 16 30 H 0.05 2.15 6.89 -2.39 -0.02 2.14 16 31 H 0.00 0.23 4.71 -2.39 -0.01 0.22 16 32 H -0.03 -2.00 6.28 -2.39 -0.01 -2.01 16 33 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 34 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.00 -0.08 6.21 -2.38 -0.01 -0.09 16 36 H 0.34 9.08 9.08 -89.70 -0.81 8.27 16 37 H 0.35 12.50 8.36 -89.69 -0.75 11.75 16 38 H 0.15 7.69 5.83 -2.91 -0.02 7.68 16 39 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.21 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -69.28 323.59 0.65 -68.64 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: -0.53 Total: 30.64 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 5.90 Total: -10.81 kcal Atomic # 7 Polarization: -128.47 SS G_CDS: -6.75 Total: -135.22 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -69.28 0.65 -68.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043231901.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.026 kcal (2) G-P(sol) polarization free energy of solvation -69.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds