Wall clock time and date at job start Mon Mar 30 2020 04:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30971 * 125.77504 * 2 1 4 4 N 1.40067 * 108.47502 * 179.76578 * 3 2 1 5 5 C 1.46500 * 126.08413 * 180.26718 * 4 3 2 6 6 C 1.36086 * 107.83398 * 0.42556 * 4 3 2 7 7 N 1.39708 * 126.27896 * 179.84345 * 6 4 3 8 8 C 1.46896 * 111.00330 * 302.43911 * 7 6 4 9 9 C 1.50705 * 109.47059 * 197.67248 * 8 7 6 10 10 H 1.08002 * 119.99673 * 5.04788 * 9 8 7 11 11 C 1.37875 * 120.00037 * 185.04757 * 9 8 7 12 12 N 1.31513 * 120.00031 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99912 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47236 * 60.00215 * 13 11 9 15 15 H 1.48502 * 109.46884 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47322 * 300.00189 * 13 11 9 17 17 C 1.46903 * 110.99784 * 66.39395 * 7 6 4 18 18 C 1.53002 * 109.46874 * 76.43200 * 17 7 6 19 19 C 1.52995 * 109.47481 * 65.49471 * 18 17 7 20 20 C 1.53003 * 109.46753 * 185.49398 * 18 17 7 21 21 C 1.36402 * 107.43176 * 359.58472 * 6 4 3 22 22 N 1.41391 * 126.09639 * 180.30090 * 21 6 4 23 23 H 1.09002 * 109.46949 * 269.97617 * 1 2 3 24 24 H 1.08998 * 109.47469 * 29.97055 * 1 2 3 25 25 H 1.08996 * 109.47342 * 149.97484 * 1 2 3 26 26 H 1.09003 * 109.47133 * 274.09041 * 5 4 3 27 27 H 1.08999 * 109.47150 * 34.08843 * 5 4 3 28 28 H 1.09000 * 109.47097 * 154.08910 * 5 4 3 29 29 H 1.09003 * 109.46733 * 317.66805 * 8 7 6 30 30 H 1.08996 * 109.47396 * 77.66897 * 8 7 6 31 31 H 0.96995 * 120.00247 * 179.97438 * 12 11 9 32 32 H 1.08995 * 109.47605 * 316.42997 * 17 7 6 33 33 H 1.08995 * 109.46828 * 196.42502 * 17 7 6 34 34 H 1.08995 * 109.47114 * 305.49011 * 18 17 7 35 35 H 1.09001 * 109.47080 * 184.92912 * 19 18 17 36 36 H 1.09006 * 109.47123 * 304.92287 * 19 18 17 37 37 H 1.08993 * 109.47423 * 64.92620 * 19 18 17 38 38 H 1.08997 * 109.47270 * 60.00053 * 20 18 17 39 39 H 1.09002 * 109.47334 * 180.02562 * 20 18 17 40 40 H 1.09004 * 109.46932 * 299.99433 * 20 18 17 41 41 H 0.96993 * 119.99897 * 0.02562 * 22 21 6 42 42 H 0.96996 * 119.99767 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0626 0.0000 4 7 3.6100 0.6461 0.0054 5 6 4.7858 1.5199 0.0128 6 6 3.6227 -0.7147 -0.0009 7 7 4.7566 -1.5308 -0.0015 8 6 5.6169 -1.2359 -1.1552 9 6 6.5717 -2.3810 -1.3755 10 1 6.4890 -3.2758 -0.7764 11 6 7.5506 -2.2861 -2.3418 12 7 7.6514 -1.1962 -3.0709 13 14 8.7345 -3.7051 -2.6143 14 1 7.9711 -4.9205 -2.9952 15 1 9.6841 -3.3556 -3.7012 16 1 9.4898 -3.9670 -1.3629 17 6 5.5012 -1.3985 1.2579 18 6 4.7791 -2.1746 2.3612 19 6 4.8127 -3.6698 2.0387 20 6 5.4767 -1.9257 3.7000 21 6 2.3252 -1.1355 -0.0006 22 7 1.8852 -2.4792 -0.0001 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3634 -0.8897 -0.5142 26 1 5.0385 1.7975 -1.0106 27 1 4.5671 2.4185 0.5896 28 1 5.6267 0.9937 0.4647 29 1 4.9997 -1.1014 -2.0435 30 1 6.1816 -0.3236 -0.9635 31 1 8.3403 -1.1293 -3.7504 32 1 5.5628 -0.3461 1.5347 33 1 6.5063 -1.7999 1.1296 34 1 3.7438 -1.8395 2.4231 35 1 4.2242 -4.2141 2.7773 36 1 4.3944 -3.8370 1.0461 37 1 5.8433 -4.0236 2.0630 38 1 5.4527 -0.8605 3.9297 39 1 4.9626 -2.4789 4.4860 40 1 6.5120 -2.2609 3.6380 41 1 2.5326 -3.2014 0.0005 42 1 0.9360 -2.6787 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043416345.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:58 Heat of formation + Delta-G solvation = 72.456159 kcal Electronic energy + Delta-G solvation = -21656.613171 eV Core-core repulsion = 18673.062839 eV Total energy + Delta-G solvation = -2983.550332 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.76050 -37.21805 -34.46557 -33.86697 -32.64403 -31.52705 -29.44570 -27.73214 -26.81890 -26.65361 -24.68355 -24.38322 -21.91063 -20.03609 -19.54152 -18.79616 -16.49760 -16.32361 -15.57323 -15.38512 -14.90097 -14.56237 -14.42245 -13.82752 -13.44335 -13.34063 -13.20483 -12.85388 -12.43684 -12.29326 -12.12443 -12.01096 -11.83283 -11.71857 -11.48255 -11.20825 -10.91620 -10.77710 -10.54048 -10.30571 -10.22559 -10.08069 -10.05023 -9.90668 -9.38917 -8.51906 -8.39040 -7.62014 -6.45221 -6.09845 -4.12502 2.43119 3.05444 3.28803 3.33589 3.35897 3.47843 4.33840 4.64563 4.68521 5.10832 5.24963 5.27708 5.37276 5.44276 5.52872 5.62689 5.65648 5.80011 5.82387 5.92823 5.96507 6.01828 6.12256 6.15633 6.25204 6.33528 6.36556 6.51900 6.57303 6.83387 6.87037 6.93050 7.07966 7.14040 7.41122 7.78599 7.96501 8.07252 8.24620 8.28833 8.61593 8.67284 8.94766 9.52023 11.00150 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.016801 B = 0.006970 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.208629 B = 4016.497363 C = 4598.122372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.024 3.976 3 N -0.292 5.292 4 N -0.385 5.385 5 C 0.104 3.896 6 C 0.194 3.806 7 N -0.453 5.453 8 C 0.194 3.806 9 C -0.508 4.508 10 H 0.066 0.934 11 C 0.058 3.942 12 N -0.897 5.897 13 Si 0.899 3.101 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.063 3.937 18 C -0.088 4.088 19 C -0.132 4.132 20 C -0.144 4.144 21 C 0.072 3.928 22 N -0.870 5.870 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.027 0.973 30 H 0.003 0.997 31 H 0.263 0.737 32 H 0.025 0.975 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.037 0.963 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.046 0.954 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.399 0.601 42 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.464 0.141 9.431 12.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.143 4.143 3 N -0.119 5.119 4 N -0.176 5.176 5 C -0.038 4.038 6 C -0.026 4.026 7 N -0.176 5.176 8 C 0.070 3.930 9 C -0.547 4.547 10 H 0.084 0.916 11 C -0.144 4.144 12 N -0.536 5.536 13 Si 0.727 3.273 14 H -0.201 1.201 15 H -0.214 1.214 16 H -0.202 1.202 17 C -0.064 4.064 18 C -0.107 4.107 19 C -0.190 4.190 20 C -0.202 4.202 21 C -0.037 4.037 22 N -0.418 5.418 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.045 0.955 30 H 0.021 0.979 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.228 0.772 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -8.291 1.158 9.222 12.456 hybrid contribution 1.070 -0.986 -0.336 1.493 sum -7.221 0.172 8.886 11.452 Atomic orbital electron populations 1.19978 0.87560 1.02488 1.01946 1.21671 0.96189 0.89748 1.06718 1.77017 0.86760 1.22486 1.25668 1.48778 1.04527 1.05220 1.59101 1.21935 0.84474 0.94069 1.03285 1.19338 0.93354 0.80922 1.09021 1.59997 1.06603 1.46665 1.04322 1.19897 0.90431 0.96472 0.86183 1.21054 1.13179 1.01623 1.18803 0.91565 1.24972 0.97611 0.96018 0.95805 1.69939 1.34255 1.26936 1.22506 0.86546 0.80561 0.82481 0.77750 1.20120 1.21390 1.20224 1.22254 0.98358 0.97135 0.88658 1.21041 0.99469 0.96671 0.93539 1.21674 1.01093 0.94490 1.01728 1.21811 1.00657 1.00718 0.97039 1.16868 0.89744 0.86216 1.10887 1.41493 1.08066 1.02180 1.90105 0.91470 0.91417 0.91327 0.90941 0.90542 0.89423 0.95498 0.97915 0.92774 0.95735 0.89203 0.91754 0.94353 0.91165 0.93272 0.93471 0.93119 0.92709 0.77156 0.78703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.76 10.29 36.01 0.37 -0.39 16 2 C 0.02 0.41 7.21 -82.32 -0.59 -0.18 16 3 N -0.29 -5.62 12.56 33.71 0.42 -5.20 16 4 N -0.39 -7.54 4.04 -66.82 -0.27 -7.81 16 5 C 0.10 1.79 9.81 59.85 0.59 2.37 16 6 C 0.19 3.91 4.74 -152.08 -0.72 3.18 16 7 N -0.45 -9.36 3.83 -174.11 -0.67 -10.03 16 8 C 0.19 4.84 4.11 -4.98 -0.02 4.82 16 9 C -0.51 -13.54 8.39 -34.44 -0.29 -13.83 16 10 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 11 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 12 N -0.90 -25.83 13.29 55.43 0.74 -25.09 16 13 Si 0.90 21.03 29.54 -169.99 -5.02 16.00 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 C 0.06 1.17 3.84 -3.82 -0.01 1.16 16 18 C -0.09 -1.39 2.97 -90.62 -0.27 -1.66 16 19 C -0.13 -2.03 9.14 37.15 0.34 -1.69 16 20 C -0.14 -1.94 9.19 37.16 0.34 -1.59 16 21 C 0.07 1.32 7.24 -83.46 -0.60 0.72 16 22 N -0.87 -13.22 9.23 32.49 0.30 -12.92 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.73 7.69 -51.93 -0.40 0.33 16 26 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.09 1.51 4.64 -51.93 -0.24 1.27 16 29 H 0.03 0.76 7.95 -51.93 -0.41 0.35 16 30 H 0.00 0.08 6.14 -51.93 -0.32 -0.24 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.02 0.45 5.54 -51.93 -0.29 0.16 16 33 H 0.09 1.81 7.20 -51.93 -0.37 1.44 16 34 H 0.06 1.10 7.60 -51.93 -0.39 0.70 16 35 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 1.18 6.99 -51.93 -0.36 0.81 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.40 6.28 8.31 -40.82 -0.34 5.94 16 42 H 0.39 4.70 8.35 -40.82 -0.34 4.36 16 LS Contribution 336.01 15.07 5.06 5.06 Total: -1.00 -29.98 336.01 -7.22 -37.21 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -6.82 Total: 8.38 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -0.97 Total: -5.61 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: 0.52 Total: -61.05 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.98 -7.22 -37.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043416345.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.665 kcal (2) G-P(sol) polarization free energy of solvation -29.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds