Wall clock time and date at job start Mon Mar 30 2020 04:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30971 * 125.77504 * 2 1 4 4 N 1.40067 * 108.47502 * 179.76578 * 3 2 1 5 5 C 1.46500 * 126.08413 * 180.26718 * 4 3 2 6 6 C 1.36086 * 107.83398 * 0.42556 * 4 3 2 7 7 N 1.39708 * 126.27896 * 179.84345 * 6 4 3 8 8 C 1.46896 * 111.00330 * 302.43911 * 7 6 4 9 9 C 1.50705 * 109.47059 * 197.67248 * 8 7 6 10 10 H 1.08002 * 119.99673 * 5.04788 * 9 8 7 11 11 C 1.37875 * 120.00037 * 185.04757 * 9 8 7 12 12 N 1.31513 * 120.00031 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99912 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47236 * 60.00215 * 13 11 9 15 15 H 1.48502 * 109.46884 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47322 * 300.00189 * 13 11 9 17 17 C 1.46903 * 110.99784 * 66.39395 * 7 6 4 18 18 C 1.53002 * 109.46874 * 76.43200 * 17 7 6 19 19 C 1.52995 * 109.47481 * 65.49471 * 18 17 7 20 20 C 1.53003 * 109.46753 * 185.49398 * 18 17 7 21 21 C 1.36402 * 107.43176 * 359.58472 * 6 4 3 22 22 N 1.41391 * 126.09639 * 180.30090 * 21 6 4 23 23 H 1.09002 * 109.46949 * 269.97617 * 1 2 3 24 24 H 1.08998 * 109.47469 * 29.97055 * 1 2 3 25 25 H 1.08996 * 109.47342 * 149.97484 * 1 2 3 26 26 H 1.09003 * 109.47133 * 274.09041 * 5 4 3 27 27 H 1.08999 * 109.47150 * 34.08843 * 5 4 3 28 28 H 1.09000 * 109.47097 * 154.08910 * 5 4 3 29 29 H 1.09003 * 109.46733 * 317.66805 * 8 7 6 30 30 H 1.08996 * 109.47396 * 77.66897 * 8 7 6 31 31 H 0.96995 * 120.00247 * 179.97438 * 12 11 9 32 32 H 1.08995 * 109.47605 * 316.42997 * 17 7 6 33 33 H 1.08995 * 109.46828 * 196.42502 * 17 7 6 34 34 H 1.08995 * 109.47114 * 305.49011 * 18 17 7 35 35 H 1.09001 * 109.47080 * 184.92912 * 19 18 17 36 36 H 1.09006 * 109.47123 * 304.92287 * 19 18 17 37 37 H 1.08993 * 109.47423 * 64.92620 * 19 18 17 38 38 H 1.08997 * 109.47270 * 60.00053 * 20 18 17 39 39 H 1.09002 * 109.47334 * 180.02562 * 20 18 17 40 40 H 1.09004 * 109.46932 * 299.99433 * 20 18 17 41 41 H 0.96993 * 119.99897 * 0.02562 * 22 21 6 42 42 H 0.96996 * 119.99767 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0626 0.0000 4 7 3.6100 0.6461 0.0054 5 6 4.7858 1.5199 0.0128 6 6 3.6227 -0.7147 -0.0009 7 7 4.7566 -1.5308 -0.0015 8 6 5.6169 -1.2359 -1.1552 9 6 6.5717 -2.3810 -1.3755 10 1 6.4890 -3.2758 -0.7764 11 6 7.5506 -2.2861 -2.3418 12 7 7.6514 -1.1962 -3.0709 13 14 8.7345 -3.7051 -2.6143 14 1 7.9711 -4.9205 -2.9952 15 1 9.6841 -3.3556 -3.7012 16 1 9.4898 -3.9670 -1.3629 17 6 5.5012 -1.3985 1.2579 18 6 4.7791 -2.1746 2.3612 19 6 4.8127 -3.6698 2.0387 20 6 5.4767 -1.9257 3.7000 21 6 2.3252 -1.1355 -0.0006 22 7 1.8852 -2.4792 -0.0001 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3634 -0.8897 -0.5142 26 1 5.0385 1.7975 -1.0106 27 1 4.5671 2.4185 0.5896 28 1 5.6267 0.9937 0.4647 29 1 4.9997 -1.1014 -2.0435 30 1 6.1816 -0.3236 -0.9635 31 1 8.3403 -1.1293 -3.7504 32 1 5.5628 -0.3461 1.5347 33 1 6.5063 -1.7999 1.1296 34 1 3.7438 -1.8395 2.4231 35 1 4.2242 -4.2141 2.7773 36 1 4.3944 -3.8370 1.0461 37 1 5.8433 -4.0236 2.0630 38 1 5.4527 -0.8605 3.9297 39 1 4.9626 -2.4789 4.4860 40 1 6.5120 -2.2609 3.6380 41 1 2.5326 -3.2014 0.0005 42 1 0.9360 -2.6787 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043416345.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:57 Heat of formation + Delta-G solvation = 52.789166 kcal Electronic energy + Delta-G solvation = -21657.465996 eV Core-core repulsion = 18673.062839 eV Total energy + Delta-G solvation = -2984.403156 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.21077 -38.74110 -35.86596 -35.35450 -34.50912 -32.97389 -30.72186 -29.45786 -28.31424 -27.87158 -26.29508 -25.78326 -23.76775 -21.42011 -20.96121 -20.19761 -18.50319 -17.75436 -17.12102 -16.83890 -16.56587 -16.12891 -15.80613 -15.38604 -14.86117 -14.72455 -14.41711 -14.24627 -14.00527 -13.70954 -13.64186 -13.23412 -13.17255 -12.98421 -12.88086 -12.79455 -12.65910 -12.49062 -12.05705 -11.86856 -11.69566 -11.56625 -11.47788 -11.40029 -11.24588 -10.61816 -9.84406 -9.31427 -8.21623 -7.82057 -6.30934 0.95864 1.42144 1.44500 1.52199 1.65948 2.06939 2.39615 3.05290 3.12355 3.38272 3.76324 3.94432 4.11398 4.18630 4.27880 4.33045 4.39854 4.48248 4.60666 4.72504 4.82495 4.85401 4.89643 4.90516 5.01796 5.05969 5.09797 5.12459 5.17296 5.25498 5.33519 5.52663 5.59878 5.64171 5.73634 5.84496 6.10142 6.18516 6.73460 6.83279 6.89912 7.04907 7.38634 7.47274 8.89643 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.016801 B = 0.006970 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.208629 B = 4016.497363 C = 4598.122372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.025 3.975 3 N -0.309 5.309 4 N -0.400 5.400 5 C 0.106 3.894 6 C 0.159 3.841 7 N -0.445 5.445 8 C 0.216 3.784 9 C -0.517 4.517 10 H 0.069 0.931 11 C 0.006 3.994 12 N -0.934 5.934 13 Si 0.967 3.033 14 H -0.269 1.269 15 H -0.287 1.287 16 H -0.265 1.265 17 C 0.066 3.934 18 C -0.078 4.078 19 C -0.128 4.128 20 C -0.139 4.139 21 C 0.072 3.928 22 N -0.858 5.858 23 H 0.088 0.912 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.057 0.943 27 H 0.103 0.897 28 H 0.080 0.920 29 H -0.017 1.017 30 H -0.016 1.016 31 H 0.264 0.736 32 H 0.024 0.976 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.045 0.955 38 H 0.048 0.952 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.398 0.602 42 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.545 -1.146 10.889 14.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.142 4.142 3 N -0.135 5.135 4 N -0.191 5.191 5 C -0.035 4.035 6 C -0.061 4.061 7 N -0.168 5.168 8 C 0.091 3.909 9 C -0.555 4.555 10 H 0.087 0.913 11 C -0.192 4.192 12 N -0.574 5.574 13 Si 0.791 3.209 14 H -0.194 1.194 15 H -0.213 1.213 16 H -0.190 1.190 17 C -0.061 4.061 18 C -0.097 4.097 19 C -0.185 4.185 20 C -0.197 4.197 21 C -0.039 4.039 22 N -0.407 5.407 23 H 0.107 0.893 24 H 0.093 0.907 25 H 0.107 0.893 26 H 0.076 0.924 27 H 0.122 0.878 28 H 0.099 0.901 29 H 0.001 0.999 30 H 0.002 0.998 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.226 0.774 42 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -9.402 -0.147 10.705 14.248 hybrid contribution 1.298 -0.551 -0.783 1.613 sum -8.104 -0.698 9.922 12.830 Atomic orbital electron populations 1.20171 0.83954 1.03892 1.03740 1.22452 0.98308 0.88682 1.04807 1.76975 0.86763 1.23596 1.26210 1.48857 1.05046 1.05205 1.60041 1.21924 0.84036 0.94810 1.02769 1.19505 0.93665 0.81438 1.11534 1.59879 1.06195 1.47016 1.03681 1.19437 0.89757 0.95324 0.86421 1.21343 1.13462 1.02002 1.18731 0.91311 1.25852 0.99391 0.98546 0.95451 1.70078 1.35095 1.29031 1.23190 0.85474 0.78277 0.79158 0.77964 1.19444 1.21255 1.18954 1.22281 0.97560 0.97579 0.88714 1.20949 0.98659 0.96463 0.93623 1.21622 1.01162 0.94283 1.01450 1.21768 1.00718 1.01276 0.95930 1.17157 0.89354 0.87682 1.09692 1.41459 1.09090 1.00900 1.89292 0.89336 0.90689 0.89274 0.92428 0.87843 0.90142 0.99880 0.99793 0.92766 0.95809 0.91217 0.92666 0.91875 0.92995 0.93635 0.93270 0.91038 0.92484 0.77365 0.76732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.30 10.29 71.24 0.73 -0.56 16 2 C 0.03 0.85 7.21 43.10 0.31 1.16 16 3 N -0.31 -11.73 12.56 -47.27 -0.59 -12.33 16 4 N -0.40 -15.93 4.04 -365.31 -1.47 -17.41 16 5 C 0.11 3.78 9.81 127.77 1.25 5.04 16 6 C 0.16 6.48 4.74 131.04 0.62 7.10 16 7 N -0.44 -18.93 3.83 -704.77 -2.70 -21.63 16 8 C 0.22 11.29 4.11 85.56 0.35 11.64 16 9 C -0.52 -28.26 8.39 25.60 0.21 -28.04 16 10 H 0.07 3.65 7.81 -2.91 -0.02 3.62 16 11 C 0.01 0.33 5.46 84.65 0.46 0.79 16 12 N -0.93 -55.26 13.29 21.45 0.28 -54.98 16 13 Si 0.97 43.29 29.54 68.60 2.03 45.32 16 14 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 15 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 16 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 17 C 0.07 2.47 3.84 86.30 0.33 2.80 16 18 C -0.08 -2.38 2.97 -10.79 -0.03 -2.41 16 19 C -0.13 -3.73 9.14 71.98 0.66 -3.07 16 20 C -0.14 -3.46 9.19 71.98 0.66 -2.79 16 21 C 0.07 2.57 7.24 37.58 0.27 2.84 16 22 N -0.86 -24.78 9.23 -51.12 -0.47 -25.26 16 23 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.09 1.59 7.69 -2.39 -0.02 1.57 16 26 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 28 H 0.08 2.93 4.64 -2.39 -0.01 2.92 16 29 H -0.02 -1.02 7.95 -2.39 -0.02 -1.04 16 30 H -0.02 -0.86 6.14 -2.39 -0.01 -0.88 16 31 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 32 H 0.02 0.89 5.54 -2.39 -0.01 0.88 16 33 H 0.07 2.88 7.20 -2.39 -0.02 2.87 16 34 H 0.05 1.81 7.60 -2.39 -0.02 1.79 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.05 1.70 6.99 -2.38 -0.02 1.68 16 37 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16 39 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.40 12.10 8.31 -92.71 -0.77 11.33 16 42 H 0.40 8.78 8.35 -92.71 -0.77 8.01 16 Total: -1.00 -65.90 336.01 2.39 -63.51 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: -0.52 Total: 28.29 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 5.84 Total: -5.51 kcal Atomic # 7 Polarization: -126.64 SS G_CDS: -4.95 Total: -131.60 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -65.90 2.39 -63.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043416345.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.294 kcal (2) G-P(sol) polarization free energy of solvation -65.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds