Wall clock time and date at job start Mon Mar 30 2020 04:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47337 * 2 1 4 4 C 1.53002 * 109.47280 * 119.99700 * 2 1 3 5 5 N 1.46893 * 109.46871 * 64.51366 * 4 2 1 6 6 C 1.46903 * 110.99890 * 199.75303 * 5 4 2 7 7 C 1.50693 * 109.47218 * 66.04691 * 6 5 4 8 8 H 1.07997 * 120.00583 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99705 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99943 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00205 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47202 * 89.99891 * 11 9 7 13 13 H 1.48501 * 109.46871 * 209.99929 * 11 9 7 14 14 H 1.48502 * 109.46992 * 329.99830 * 11 9 7 15 15 C 1.46898 * 111.00092 * 75.79770 * 5 4 2 16 16 C 1.53004 * 109.47292 * 199.69256 * 15 5 4 17 17 N 1.46494 * 109.47327 * 174.84949 * 16 15 5 18 18 C 1.35969 * 126.07388 * 125.00049 * 17 16 15 19 19 C 1.35705 * 107.55597 * 179.97438 * 18 17 16 20 20 N 1.40792 * 126.06805 * 179.97438 * 19 18 17 21 21 C 1.40218 * 107.86154 * 359.97438 * 19 18 17 22 22 N 1.30865 * 108.36809 * 359.97438 * 21 19 18 23 23 H 1.09004 * 109.46883 * 60.00186 * 1 2 3 24 24 H 1.08998 * 109.46767 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47439 * 300.00082 * 1 2 3 26 26 H 1.08999 * 109.47667 * 239.99848 * 2 1 3 27 27 H 1.08994 * 109.47667 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.47090 * 300.00299 * 3 2 1 29 29 H 1.08999 * 109.46866 * 59.99357 * 3 2 1 30 30 H 1.09003 * 109.46764 * 304.51212 * 4 2 1 31 31 H 1.08997 * 109.47116 * 184.51632 * 4 2 1 32 32 H 1.09007 * 109.47023 * 186.04828 * 6 5 4 33 33 H 1.08994 * 109.47053 * 306.04253 * 6 5 4 34 34 H 0.96998 * 120.00528 * 180.02562 * 10 9 7 35 35 H 1.08993 * 109.47388 * 79.69311 * 15 5 4 36 36 H 1.09004 * 109.46906 * 319.68707 * 15 5 4 37 37 H 1.09003 * 109.47059 * 54.84639 * 16 15 5 38 38 H 1.09001 * 109.47233 * 294.85193 * 16 15 5 39 39 H 1.08001 * 126.22176 * 0.24282 * 18 17 16 40 40 H 0.97005 * 120.00244 * 359.97438 * 20 19 18 41 41 H 0.96997 * 120.00488 * 179.97438 * 20 19 18 42 42 H 1.08005 * 125.81670 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6414 -2.1340 1.1961 6 6 1.6843 -2.7438 2.5319 7 6 0.6358 -2.1082 3.4081 8 1 0.0013 -1.3289 3.0125 9 6 0.4873 -2.5209 4.7152 10 7 -0.4280 -1.9666 5.4798 11 14 1.5852 -3.8683 5.3998 12 1 2.8043 -3.2607 5.9913 13 1 0.8497 -4.6217 6.4471 14 1 1.9742 -4.7936 4.3054 15 6 2.4787 -2.8819 0.2488 16 6 1.7642 -4.1735 -0.1540 17 7 2.5409 -4.8587 -1.1900 18 6 2.9874 -6.1420 -1.1385 19 6 3.6606 -6.3876 -2.2909 20 7 4.2856 -7.5989 -2.6437 21 6 3.6233 -5.2210 -3.0679 22 7 2.9539 -4.3088 -2.4103 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6121 -0.2561 2.1374 31 1 3.1270 -0.6516 1.2906 32 1 1.4895 -3.8131 2.4495 33 1 2.6692 -2.5867 2.9715 34 1 -0.5323 -2.2566 6.3995 35 1 3.4312 -3.1254 0.7194 36 1 2.6565 -2.2734 -0.6379 37 1 0.7733 -3.9351 -0.5408 38 1 1.6678 -4.8222 0.7166 39 1 2.8307 -6.8403 -0.3297 40 1 4.2573 -8.3544 -2.0359 41 1 4.7446 -7.6781 -3.4946 42 1 4.0708 -5.0964 -4.0429 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050614904.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:17 Heat of formation + Delta-G solvation = 55.429627 kcal Electronic energy + Delta-G solvation = -20498.023939 eV Core-core repulsion = 17513.735282 eV Total energy + Delta-G solvation = -2984.288657 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.89531 -39.32446 -36.02892 -35.32547 -34.52497 -33.32454 -30.71620 -29.49702 -28.10128 -27.88253 -25.91422 -24.47142 -22.35028 -21.75612 -21.38493 -20.59124 -18.94554 -18.19371 -16.97743 -16.76174 -16.35793 -16.17831 -16.05546 -15.56913 -15.31101 -14.91935 -14.69417 -14.50787 -14.40083 -13.92995 -13.49330 -13.38504 -13.24946 -12.95824 -12.76826 -12.67690 -12.45407 -12.15085 -11.85221 -11.74649 -11.64716 -11.59633 -11.47365 -11.31425 -11.13661 -10.76362 -10.28167 -9.08279 -8.25384 -8.01849 -6.27716 1.03842 1.34863 1.35528 1.45661 1.59871 2.11498 2.35053 3.06224 3.17378 3.31590 3.71835 3.99717 4.04141 4.08230 4.22241 4.26052 4.35907 4.40170 4.53756 4.61302 4.75539 4.79871 4.84197 4.88228 4.92760 4.98933 5.04911 5.07001 5.13608 5.18607 5.31568 5.52466 5.56684 5.62911 5.63881 6.00031 6.16321 6.32412 6.63655 6.79825 6.81560 6.86960 7.33612 7.35229 8.90986 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.013788 B = 0.005826 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.301225 B = 4804.528917 C = 6492.750368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.084 4.084 3 C -0.140 4.140 4 C 0.070 3.930 5 N -0.528 5.528 6 C 0.169 3.831 7 C -0.508 4.508 8 H 0.043 0.957 9 C 0.011 3.989 10 N -0.947 5.947 11 Si 0.939 3.061 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.246 1.246 15 C 0.055 3.945 16 C 0.153 3.847 17 N -0.373 5.373 18 C -0.045 4.045 19 C 0.052 3.948 20 N -0.868 5.868 21 C -0.002 4.002 22 N -0.306 5.306 23 H 0.061 0.939 24 H 0.047 0.953 25 H 0.032 0.968 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.025 0.975 32 H 0.036 0.964 33 H -0.019 1.019 34 H 0.265 0.735 35 H 0.024 0.976 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.184 0.816 40 H 0.402 0.598 41 H 0.406 0.594 42 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.005 -7.516 -15.977 20.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.103 4.103 3 C -0.198 4.198 4 C -0.058 4.058 5 N -0.252 5.252 6 C 0.042 3.958 7 C -0.547 4.547 8 H 0.062 0.938 9 C -0.186 4.186 10 N -0.588 5.588 11 Si 0.764 3.236 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.169 1.169 15 C -0.075 4.075 16 C 0.031 3.969 17 N -0.161 5.161 18 C -0.192 4.192 19 C -0.058 4.058 20 N -0.417 5.417 21 C -0.190 4.190 22 N -0.129 5.129 23 H 0.080 0.920 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.054 0.946 33 H -0.001 1.001 34 H 0.074 0.926 35 H 0.042 0.958 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.201 0.799 40 H 0.231 0.769 41 H 0.235 0.765 42 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 8.889 -6.210 -15.854 19.207 hybrid contribution 1.298 -1.456 1.243 2.313 sum 10.187 -7.666 -14.611 19.392 Atomic orbital electron populations 1.21584 0.95157 1.01414 1.00254 1.21065 0.96317 0.96071 0.96818 1.21773 1.00930 0.95017 1.02085 1.22074 0.96545 0.88189 0.99014 1.61737 1.52568 1.02290 1.08590 1.20034 0.93992 0.95407 0.86353 1.21217 1.17441 1.20495 0.95513 0.93828 1.25761 0.96689 0.98943 0.97247 1.70040 1.35833 1.44735 1.08195 0.85834 0.78867 0.80025 0.78923 1.19895 1.20873 1.16900 1.22207 0.93574 0.94901 0.96776 1.21500 0.93813 0.93860 0.87733 1.48291 1.44103 1.09516 1.14208 1.22176 1.06375 0.88794 1.01885 1.17825 1.03016 0.90292 0.94624 1.41432 1.65221 1.10397 1.24650 1.24022 1.02462 0.90605 1.01874 1.77136 1.17854 1.23822 0.94103 0.92027 0.93360 0.94886 0.91235 0.92362 0.91077 0.93391 0.92319 0.95672 0.94600 1.00105 0.92569 0.95758 0.89881 0.89616 0.88398 0.79872 0.76925 0.76510 0.77859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 9.08 71.98 0.65 -3.57 16 2 C -0.08 -2.64 2.96 -10.79 -0.03 -2.67 16 3 C -0.14 -3.68 9.19 71.98 0.66 -3.02 16 4 C 0.07 2.65 4.18 86.31 0.36 3.01 16 5 N -0.53 -20.96 3.79 -900.82 -3.41 -24.37 16 6 C 0.17 7.78 3.62 85.55 0.31 8.09 16 7 C -0.51 -28.44 8.79 25.60 0.22 -28.21 16 8 H 0.04 2.73 7.56 -2.91 -0.02 2.71 16 9 C 0.01 0.62 5.47 84.66 0.46 1.09 16 10 N -0.95 -58.38 13.96 21.45 0.30 -58.08 16 11 Si 0.94 43.03 27.47 68.60 1.88 44.92 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 H -0.25 -10.24 6.54 99.48 0.65 -9.59 16 15 C 0.05 1.83 5.01 86.31 0.43 2.27 16 16 C 0.15 4.70 6.55 86.38 0.57 5.27 16 17 N -0.37 -10.85 3.71 -346.90 -1.29 -12.14 16 18 C -0.04 -1.10 11.52 83.46 0.96 -0.14 16 19 C 0.05 1.14 7.26 37.59 0.27 1.41 16 20 N -0.87 -12.36 9.20 -51.74 -0.48 -12.84 16 21 C 0.00 -0.04 12.03 85.32 1.03 0.99 16 22 N -0.31 -9.04 12.34 -56.77 -0.70 -9.74 16 23 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 24 H 0.05 1.78 7.74 -2.39 -0.02 1.76 16 25 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.07 2.11 6.67 -2.39 -0.02 2.09 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 2.63 6.58 -2.39 -0.02 2.62 16 31 H 0.03 0.91 8.00 -2.39 -0.02 0.89 16 32 H 0.04 1.60 5.77 -2.38 -0.01 1.58 16 33 H -0.02 -0.87 7.55 -2.39 -0.02 -0.89 16 34 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.02 0.84 8.00 -2.39 -0.02 0.82 16 36 H 0.08 2.75 6.36 -2.38 -0.02 2.74 16 37 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 38 H 0.10 2.92 6.89 -2.39 -0.02 2.90 16 39 H 0.18 3.63 8.06 -2.91 -0.02 3.61 16 40 H 0.40 4.51 8.96 -92.70 -0.83 3.68 16 41 H 0.41 4.08 8.96 -92.71 -0.83 3.25 16 42 H 0.20 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -67.09 339.17 1.51 -65.59 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: -0.70 Total: 22.15 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: 5.90 Total: -15.49 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -5.58 Total: -117.17 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.88 Total: 44.92 kcal Total: -67.09 1.51 -65.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050614904.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.015 kcal (2) G-P(sol) polarization free energy of solvation -67.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds