Wall clock time and date at job start Mon Mar 30 2020 04:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47118 * 2 1 4 4 N 1.46899 * 109.47017 * 120.00632 * 2 1 3 5 5 C 1.46895 * 111.00430 * 73.13648 * 4 2 1 6 6 C 1.50696 * 109.47125 * 66.04434 * 5 4 2 7 7 H 1.07996 * 120.00203 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99971 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00010 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00099 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47281 * 90.00126 * 10 8 6 12 12 H 1.48501 * 109.46990 * 210.00641 * 10 8 6 13 13 H 1.48508 * 109.46882 * 329.99694 * 10 8 6 14 14 C 1.46905 * 110.99999 * 309.18045 * 4 2 1 15 15 C 1.52994 * 109.47463 * 199.87803 * 14 4 2 16 16 C 1.53000 * 109.47341 * 174.79341 * 15 14 4 17 17 N 1.46495 * 109.47141 * 179.97438 * 16 15 14 18 18 C 1.34966 * 125.96918 * 125.00041 * 17 16 15 19 19 C 1.35248 * 107.86178 * 180.22807 * 18 17 16 20 20 C 1.40425 * 107.86535 * 359.64586 * 19 18 17 21 21 N 1.39989 * 125.97935 * 180.14563 * 20 19 18 22 22 N 1.31231 * 108.04626 * 0.36036 * 20 19 18 23 23 H 1.09008 * 109.46993 * 299.99852 * 1 2 3 24 24 H 1.08994 * 109.47171 * 59.99620 * 1 2 3 25 25 H 1.09003 * 109.47252 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46630 * 239.99790 * 2 1 3 27 27 H 1.09005 * 109.46802 * 174.42651 * 3 2 1 28 28 H 1.08997 * 109.47412 * 294.42891 * 3 2 1 29 29 H 1.09000 * 109.47454 * 54.43056 * 3 2 1 30 30 H 1.09003 * 109.47349 * 186.04970 * 5 4 2 31 31 H 1.09000 * 109.47053 * 306.04333 * 5 4 2 32 32 H 0.96992 * 120.00157 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.47154 * 79.87029 * 14 4 2 34 34 H 1.09002 * 109.46753 * 319.88222 * 14 4 2 35 35 H 1.09000 * 109.47054 * 54.79568 * 15 14 4 36 36 H 1.09003 * 109.47359 * 294.79905 * 15 14 4 37 37 H 1.09000 * 109.46862 * 60.00108 * 16 15 14 38 38 H 1.08993 * 109.47242 * 300.00567 * 16 15 14 39 39 H 1.07996 * 126.07054 * 359.97232 * 18 17 16 40 40 H 1.08004 * 126.06920 * 179.77393 * 19 18 17 41 41 H 0.97003 * 120.00081 * 180.23784 * 21 20 19 42 42 H 0.97001 * 119.99907 * 0.22171 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.8201 -2.1437 1.0878 6 6 2.6873 -2.6864 -0.0188 7 1 3.3234 -2.0201 -0.5824 8 6 2.6694 -4.0338 -0.3109 9 7 1.8952 -4.8453 0.3759 10 14 3.7449 -4.7066 -1.6820 11 1 5.0661 -5.0975 -1.1282 12 1 3.0904 -5.8946 -2.2867 13 1 3.9329 -3.6625 -2.7212 14 6 1.3783 -0.1647 2.4109 15 6 2.2256 -0.5219 3.6337 16 6 1.6281 0.1371 4.8785 17 7 2.4392 -0.2054 6.0493 18 6 3.0032 0.6710 6.9069 19 6 3.6710 -0.0381 7.8452 20 6 3.5027 -1.4018 7.5554 21 7 4.0333 -2.4699 8.2884 22 7 2.7650 -1.4997 6.4745 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1255 1.4440 0.0998 28 1 1.7605 1.9267 -0.9356 29 1 1.5976 1.9843 0.8359 30 1 2.0912 -2.6212 2.0293 31 1 0.7736 -2.3503 0.8638 32 1 1.8828 -5.7932 0.1707 33 1 0.3854 -0.6020 2.5165 34 1 1.2913 0.9191 2.3331 35 1 3.2446 -0.1638 3.4867 36 1 2.2362 -1.6039 3.7649 37 1 0.6091 -0.2209 5.0254 38 1 1.6176 1.2191 4.7472 39 1 2.9368 1.7475 6.8512 40 1 4.2321 0.3717 8.6721 41 1 3.8645 -3.3827 8.0068 42 1 4.5699 -2.2973 9.0778 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071352313.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:52 Heat of formation + Delta-G solvation = 77.010260 kcal Electronic energy + Delta-G solvation = -20323.258309 eV Core-core repulsion = 17339.905458 eV Total energy + Delta-G solvation = -2983.352851 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.86860 -37.93862 -35.18466 -33.29489 -32.74893 -30.84375 -29.74206 -29.05560 -26.66473 -26.49044 -24.27421 -22.25624 -21.46184 -21.08126 -20.02891 -18.63539 -17.05213 -16.24461 -16.14318 -15.60099 -15.16951 -14.84894 -14.48149 -14.25705 -14.06031 -13.33243 -13.17572 -12.93507 -12.79285 -12.43812 -12.04924 -11.92539 -11.62867 -11.31734 -11.13960 -10.92330 -10.87048 -10.64519 -10.55770 -10.50335 -10.26441 -10.10068 -9.95051 -9.57809 -9.10325 -8.60313 -8.37885 -7.69303 -7.15959 -5.97596 -3.98265 2.16117 2.64212 3.21414 3.34985 3.40841 3.43949 3.99574 4.45976 4.67250 4.92163 4.96528 5.36374 5.39752 5.46294 5.48533 5.60841 5.73125 5.75482 5.77504 5.91251 5.98252 6.03115 6.05173 6.12054 6.28741 6.30003 6.45795 6.53743 6.57460 6.80057 6.81450 6.91199 7.26218 7.40399 7.46521 7.48802 7.64576 7.86057 8.18235 8.28727 8.32916 8.61802 9.09321 9.65397 11.13266 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.015479 B = 0.004857 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.427982 B = 5763.379094 C = 7120.938985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.080 3.920 3 C -0.139 4.139 4 N -0.529 5.529 5 C 0.191 3.809 6 C -0.506 4.506 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.058 3.942 15 C -0.123 4.123 16 C 0.140 3.860 17 N -0.364 5.364 18 C 0.075 3.925 19 C -0.318 4.318 20 C 0.327 3.673 21 N -0.850 5.850 22 N -0.339 5.339 23 H 0.045 0.955 24 H 0.047 0.953 25 H 0.060 0.940 26 H 0.092 0.908 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.032 0.968 31 H -0.006 1.006 32 H 0.260 0.740 33 H 0.028 0.972 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.170 0.830 40 H 0.140 0.860 41 H 0.402 0.598 42 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.055 12.349 11.671 16.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.029 4.029 3 C -0.197 4.197 4 N -0.253 5.253 5 C 0.066 3.934 6 C -0.544 4.544 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.071 4.071 15 C -0.161 4.161 16 C 0.018 3.982 17 N -0.145 5.145 18 C -0.073 4.073 19 C -0.351 4.351 20 C 0.066 3.934 21 N -0.402 5.402 22 N -0.172 5.172 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.011 0.989 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.187 0.813 40 H 0.158 0.842 41 H 0.230 0.770 42 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -0.167 11.595 10.707 15.783 hybrid contribution 0.200 -0.374 0.047 0.427 sum 0.033 11.221 10.754 15.542 Atomic orbital electron populations 1.22442 0.98842 1.02071 1.00485 1.21595 0.91645 0.93952 0.95710 1.21852 1.01593 0.96256 0.99994 1.62275 1.55982 1.07427 0.99611 1.19772 0.95285 0.80669 0.97695 1.21162 1.24038 0.92594 1.16637 0.92001 1.24973 0.95812 0.97022 0.96744 1.69959 1.39034 1.04027 1.40734 0.86547 0.80560 0.78437 0.82157 1.20694 1.21386 1.19899 1.21913 0.95209 0.98705 0.91275 1.21808 1.00197 1.02747 0.91383 1.21732 0.93761 1.00093 0.82598 1.48248 1.41219 1.02955 1.22103 1.22375 0.96550 0.96878 0.91533 1.20956 1.15579 0.91378 1.07208 1.19281 0.94055 0.88545 0.91476 1.41275 1.61457 1.05295 1.32211 1.77530 1.24895 0.99394 1.15352 0.93547 0.93375 0.92103 0.88954 0.92261 0.93406 0.93739 0.95046 0.98862 0.93008 0.95412 0.92125 0.90995 0.90009 0.90281 0.89086 0.81302 0.84210 0.76993 0.76543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 8.49 37.16 0.32 -2.76 16 2 C 0.08 1.51 2.76 -67.72 -0.19 1.32 16 3 C -0.14 -2.12 9.11 37.15 0.34 -1.78 16 4 N -0.53 -11.13 4.35 -228.09 -0.99 -12.12 16 5 C 0.19 4.96 4.45 -4.98 -0.02 4.94 16 6 C -0.51 -14.29 8.32 -34.44 -0.29 -14.58 16 7 H 0.06 1.74 7.22 -52.49 -0.38 1.36 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 10 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.06 1.00 3.51 -3.82 -0.01 0.99 16 15 C -0.12 -2.07 5.43 -26.73 -0.15 -2.22 16 16 C 0.14 1.84 6.51 -4.04 -0.03 1.81 16 17 N -0.36 -5.38 3.68 -61.39 -0.23 -5.61 16 18 C 0.07 0.90 11.44 -17.24 -0.20 0.70 16 19 C -0.32 -3.98 10.83 -39.82 -0.43 -4.41 16 20 C 0.33 4.79 8.46 -154.54 -1.31 3.49 16 21 N -0.85 -9.45 9.15 31.39 0.29 -9.16 16 22 N -0.34 -5.91 12.43 31.41 0.39 -5.52 16 23 H 0.05 0.71 6.66 -51.92 -0.35 0.37 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 1.20 6.71 -51.93 -0.35 0.85 16 26 H 0.09 1.98 6.61 -51.93 -0.34 1.64 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.61 6.59 -51.93 -0.34 0.27 16 30 H 0.03 0.90 6.73 -51.93 -0.35 0.55 16 31 H -0.01 -0.18 6.56 -51.93 -0.34 -0.52 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.03 0.49 7.34 -51.93 -0.38 0.11 16 34 H 0.06 0.89 6.02 -51.93 -0.31 0.57 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.08 1.70 6.97 -51.93 -0.36 1.33 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.09 0.89 8.07 -51.93 -0.42 0.47 16 39 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 41 H 0.40 4.29 8.96 -40.82 -0.37 3.93 16 42 H 0.41 3.20 8.96 -40.82 -0.37 2.84 16 LS Contribution 337.05 15.07 5.08 5.08 Total: -1.00 -33.23 337.05 -8.55 -41.78 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.75 Total: 5.97 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -2.06 Total: -11.00 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.20 Total: -58.80 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.23 -8.55 -41.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071352313.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.795 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds