Wall clock time and date at job start Mon Mar 30 2020 04:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47118 * 2 1 4 4 N 1.46899 * 109.47017 * 120.00632 * 2 1 3 5 5 C 1.46895 * 111.00430 * 73.13648 * 4 2 1 6 6 C 1.50696 * 109.47125 * 66.04434 * 5 4 2 7 7 H 1.07996 * 120.00203 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99971 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00010 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00099 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47281 * 90.00126 * 10 8 6 12 12 H 1.48501 * 109.46990 * 210.00641 * 10 8 6 13 13 H 1.48508 * 109.46882 * 329.99694 * 10 8 6 14 14 C 1.46905 * 110.99999 * 309.18045 * 4 2 1 15 15 C 1.52994 * 109.47463 * 199.87803 * 14 4 2 16 16 C 1.53000 * 109.47341 * 174.79341 * 15 14 4 17 17 N 1.46495 * 109.47141 * 179.97438 * 16 15 14 18 18 C 1.34966 * 125.96918 * 125.00041 * 17 16 15 19 19 C 1.35248 * 107.86178 * 180.22807 * 18 17 16 20 20 C 1.40425 * 107.86535 * 359.64586 * 19 18 17 21 21 N 1.39989 * 125.97935 * 180.14563 * 20 19 18 22 22 N 1.31231 * 108.04626 * 0.36036 * 20 19 18 23 23 H 1.09008 * 109.46993 * 299.99852 * 1 2 3 24 24 H 1.08994 * 109.47171 * 59.99620 * 1 2 3 25 25 H 1.09003 * 109.47252 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46630 * 239.99790 * 2 1 3 27 27 H 1.09005 * 109.46802 * 174.42651 * 3 2 1 28 28 H 1.08997 * 109.47412 * 294.42891 * 3 2 1 29 29 H 1.09000 * 109.47454 * 54.43056 * 3 2 1 30 30 H 1.09003 * 109.47349 * 186.04970 * 5 4 2 31 31 H 1.09000 * 109.47053 * 306.04333 * 5 4 2 32 32 H 0.96992 * 120.00157 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.47154 * 79.87029 * 14 4 2 34 34 H 1.09002 * 109.46753 * 319.88222 * 14 4 2 35 35 H 1.09000 * 109.47054 * 54.79568 * 15 14 4 36 36 H 1.09003 * 109.47359 * 294.79905 * 15 14 4 37 37 H 1.09000 * 109.46862 * 60.00108 * 16 15 14 38 38 H 1.08993 * 109.47242 * 300.00567 * 16 15 14 39 39 H 1.07996 * 126.07054 * 359.97232 * 18 17 16 40 40 H 1.08004 * 126.06920 * 179.77393 * 19 18 17 41 41 H 0.97003 * 120.00081 * 180.23784 * 21 20 19 42 42 H 0.97001 * 119.99907 * 0.22171 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.8201 -2.1437 1.0878 6 6 2.6873 -2.6864 -0.0188 7 1 3.3234 -2.0201 -0.5824 8 6 2.6694 -4.0338 -0.3109 9 7 1.8952 -4.8453 0.3759 10 14 3.7449 -4.7066 -1.6820 11 1 5.0661 -5.0975 -1.1282 12 1 3.0904 -5.8946 -2.2867 13 1 3.9329 -3.6625 -2.7212 14 6 1.3783 -0.1647 2.4109 15 6 2.2256 -0.5219 3.6337 16 6 1.6281 0.1371 4.8785 17 7 2.4392 -0.2054 6.0493 18 6 3.0032 0.6710 6.9069 19 6 3.6710 -0.0381 7.8452 20 6 3.5027 -1.4018 7.5554 21 7 4.0333 -2.4699 8.2884 22 7 2.7650 -1.4997 6.4745 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1255 1.4440 0.0998 28 1 1.7605 1.9267 -0.9356 29 1 1.5976 1.9843 0.8359 30 1 2.0912 -2.6212 2.0293 31 1 0.7736 -2.3503 0.8638 32 1 1.8828 -5.7932 0.1707 33 1 0.3854 -0.6020 2.5165 34 1 1.2913 0.9191 2.3331 35 1 3.2446 -0.1638 3.4867 36 1 2.2362 -1.6039 3.7649 37 1 0.6091 -0.2209 5.0254 38 1 1.6176 1.2191 4.7472 39 1 2.9368 1.7475 6.8512 40 1 4.2321 0.3717 8.6721 41 1 3.8645 -3.3827 8.0068 42 1 4.5699 -2.2973 9.0778 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071352313.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:51 Heat of formation + Delta-G solvation = 53.300937 kcal Electronic energy + Delta-G solvation = -20324.286423 eV Core-core repulsion = 17339.905458 eV Total energy + Delta-G solvation = -2984.380964 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.87468 -39.52943 -36.27971 -34.91373 -34.42345 -32.30865 -30.77899 -30.52727 -28.30145 -27.94628 -25.69112 -24.16478 -22.80818 -22.05192 -21.09810 -20.21730 -18.39168 -18.04905 -17.11763 -17.04177 -16.45293 -16.41103 -15.85561 -15.72568 -15.53152 -14.75770 -14.55322 -14.31133 -14.02487 -13.70630 -13.60353 -13.29229 -13.16387 -12.79235 -12.66226 -12.60960 -12.50466 -12.36045 -12.16419 -11.82102 -11.69711 -11.49812 -11.35660 -11.19996 -11.06798 -10.60246 -9.63963 -8.90139 -8.68192 -8.20364 -6.29859 1.19720 1.37256 1.39475 1.50094 1.67910 2.20055 2.38779 3.07499 3.12140 3.32936 3.77197 4.06595 4.11161 4.21423 4.26431 4.35054 4.40285 4.57309 4.62512 4.66438 4.72135 4.84776 4.89071 4.89506 5.02830 5.04355 5.07213 5.19159 5.26367 5.29186 5.38150 5.47807 5.55525 5.58711 5.68501 6.10499 6.35873 6.45638 6.60447 6.65412 6.74772 6.88470 7.39551 7.41203 8.90757 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.015479 B = 0.004857 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.427982 B = 5763.379094 C = 7120.938985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.073 3.927 3 C -0.127 4.127 4 N -0.539 5.539 5 C 0.211 3.789 6 C -0.520 4.520 7 H 0.061 0.939 8 C -0.001 4.001 9 N -0.937 5.937 10 Si 0.966 3.034 11 H -0.276 1.276 12 H -0.282 1.282 13 H -0.261 1.261 14 C 0.062 3.938 15 C -0.109 4.109 16 C 0.146 3.854 17 N -0.379 5.379 18 C 0.085 3.915 19 C -0.330 4.330 20 C 0.312 3.688 21 N -0.842 5.842 22 N -0.408 5.408 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.022 0.978 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.068 0.932 30 H -0.007 1.007 31 H -0.035 1.035 32 H 0.263 0.737 33 H 0.020 0.980 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.027 0.973 37 H 0.078 0.922 38 H 0.141 0.859 39 H 0.217 0.783 40 H 0.167 0.833 41 H 0.401 0.599 42 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.530 15.562 11.749 19.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.036 4.036 3 C -0.185 4.185 4 N -0.262 5.262 5 C 0.085 3.915 6 C -0.558 4.558 7 H 0.079 0.921 8 C -0.198 4.198 9 N -0.577 5.577 10 Si 0.791 3.209 11 H -0.202 1.202 12 H -0.207 1.207 13 H -0.185 1.185 14 C -0.067 4.067 15 C -0.148 4.148 16 C 0.025 3.975 17 N -0.161 5.161 18 C -0.062 4.062 19 C -0.362 4.362 20 C 0.052 3.948 21 N -0.395 5.395 22 N -0.242 5.242 23 H 0.087 0.913 24 H 0.091 0.909 25 H 0.041 0.959 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.011 0.989 31 H -0.017 1.017 32 H 0.071 0.929 33 H 0.038 0.962 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.046 0.954 37 H 0.096 0.904 38 H 0.159 0.841 39 H 0.234 0.766 40 H 0.185 0.815 41 H 0.229 0.771 42 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 0.326 14.832 10.812 18.357 hybrid contribution 0.055 -1.350 0.080 1.353 sum 0.381 13.482 10.892 17.337 Atomic orbital electron populations 1.22343 0.97460 1.00325 1.02829 1.21685 0.92857 0.95772 0.93245 1.21748 1.01074 0.93316 1.02348 1.62192 1.57282 1.04592 1.02156 1.19303 0.93017 0.84130 0.95045 1.21496 1.24154 0.93055 1.17112 0.92094 1.25917 0.97169 0.97374 0.99346 1.70104 1.40726 1.04369 1.42549 0.85430 0.78483 0.77953 0.79058 1.20175 1.20701 1.18547 1.22001 0.94354 1.00739 0.89565 1.21603 0.99926 0.99680 0.93594 1.21769 0.93040 1.02355 0.80376 1.48317 1.42181 1.02667 1.22967 1.23168 0.94425 0.98643 0.89935 1.21375 1.16096 0.90344 1.08357 1.19770 0.93569 0.90342 0.91124 1.41331 1.61087 1.04800 1.32330 1.77428 1.27376 1.01941 1.17417 0.91280 0.90859 0.95879 0.92424 0.93042 0.91084 0.91276 0.98859 1.01724 0.92867 0.96197 0.87878 0.92229 0.95374 0.90355 0.84131 0.76612 0.81535 0.77060 0.74813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.68 8.49 71.98 0.61 -5.07 16 2 C 0.07 2.70 2.76 44.91 0.12 2.83 16 3 C -0.13 -3.47 9.11 71.98 0.66 -2.81 16 4 N -0.54 -23.11 4.35 -875.55 -3.81 -26.92 16 5 C 0.21 11.69 4.45 85.56 0.38 12.07 16 6 C -0.52 -30.61 8.32 25.60 0.21 -30.39 16 7 H 0.06 3.52 7.22 -2.91 -0.02 3.50 16 8 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 9 N -0.94 -59.03 13.29 21.45 0.28 -58.75 16 10 Si 0.97 46.04 29.54 68.60 2.03 48.07 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 13 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 14 C 0.06 2.10 3.51 86.30 0.30 2.40 16 15 C -0.11 -3.76 5.43 30.59 0.17 -3.60 16 16 C 0.15 3.62 6.51 86.38 0.56 4.18 16 17 N -0.38 -10.86 3.68 -348.12 -1.28 -12.14 16 18 C 0.09 1.80 11.44 83.52 0.96 2.76 16 19 C -0.33 -7.58 10.83 22.11 0.24 -7.35 16 20 C 0.31 9.15 8.46 133.38 1.13 10.28 16 21 N -0.84 -18.81 9.15 -54.60 -0.50 -19.31 16 22 N -0.41 -14.66 12.43 -54.54 -0.68 -15.34 16 23 H 0.07 1.96 6.66 -2.38 -0.02 1.94 16 24 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.02 0.91 6.71 -2.39 -0.02 0.90 16 26 H 0.06 2.52 6.61 -2.39 -0.02 2.50 16 27 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.07 1.55 6.59 -2.39 -0.02 1.53 16 30 H -0.01 -0.41 6.73 -2.39 -0.02 -0.43 16 31 H -0.03 -2.08 6.56 -2.39 -0.02 -2.10 16 32 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 33 H 0.02 0.71 7.34 -2.39 -0.02 0.69 16 34 H 0.10 2.63 6.02 -2.39 -0.01 2.61 16 35 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.03 1.25 6.97 -2.39 -0.02 1.24 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.14 2.08 8.07 -2.39 -0.02 2.06 16 39 H 0.22 2.25 8.06 -2.91 -0.02 2.22 16 40 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 41 H 0.40 8.94 8.96 -92.71 -0.83 8.11 16 42 H 0.42 6.37 8.96 -92.71 -0.83 5.54 16 Total: -1.00 -78.47 337.05 1.21 -77.26 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -0.64 Total: 21.39 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 5.80 Total: -14.26 kcal Atomic # 7 Polarization: -126.47 SS G_CDS: -5.98 Total: -132.46 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -78.47 1.21 -77.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071352313.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.561 kcal (2) G-P(sol) polarization free energy of solvation -78.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds