Wall clock time and date at job start Mon Mar 30 2020 05:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47421 * 2 1 4 4 C 1.53003 * 109.46753 * 240.00625 * 2 1 3 5 5 C 1.53006 * 109.47187 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47159 * 59.99661 * 5 4 2 7 7 H 1.08998 * 109.46822 * 60.00392 * 6 5 4 8 8 N 1.46900 * 109.46848 * 180.02562 * 6 5 4 9 9 C 1.46901 * 111.00144 * 300.00237 * 8 6 5 10 10 C 1.53239 * 109.33912 * 187.25456 * 9 8 6 11 11 N 1.47077 * 108.52057 * 306.17091 * 10 9 8 12 12 C 1.36939 * 120.87789 * 231.18368 * 11 10 9 13 13 H 1.08001 * 119.99662 * 28.36728 * 12 11 10 14 14 C 1.38813 * 120.00229 * 208.35959 * 12 11 10 15 15 N 1.31624 * 119.99337 * 24.49995 * 14 12 11 16 16 Si 1.86792 * 120.00305 * 204.49525 * 14 12 11 17 17 H 1.48500 * 109.47427 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.46965 * 60.00503 * 16 14 12 19 19 H 1.48501 * 109.47290 * 300.00687 * 16 14 12 20 20 C 1.47078 * 118.23956 * 51.45854 * 11 10 9 21 21 C 1.46898 * 111.00109 * 64.30257 * 8 6 5 22 22 C 1.53000 * 109.46991 * 300.00256 * 6 5 4 23 23 C 1.52995 * 109.47114 * 60.00317 * 22 6 5 24 24 H 1.09009 * 109.47155 * 180.02562 * 23 22 6 25 25 C 1.52998 * 109.47590 * 59.99909 * 23 22 6 26 26 H 1.09001 * 109.46977 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46323 * 299.99491 * 1 2 3 28 28 H 1.08992 * 109.47452 * 59.99404 * 1 2 3 29 29 H 1.09002 * 109.47148 * 59.99773 * 4 2 1 30 30 H 1.09001 * 109.47056 * 299.99556 * 4 2 1 31 31 H 1.09001 * 109.46662 * 299.99677 * 5 4 2 32 32 H 1.08998 * 109.46981 * 180.02562 * 5 4 2 33 33 H 1.08995 * 109.49310 * 67.29340 * 9 8 6 34 34 H 1.09001 * 109.51016 * 307.22508 * 9 8 6 35 35 H 1.09000 * 109.62847 * 186.46002 * 10 9 8 36 36 H 1.09005 * 109.62496 * 65.88157 * 10 9 8 37 37 H 0.96999 * 120.00112 * 5.78801 * 15 14 12 38 38 H 1.09000 * 109.62849 * 68.25591 * 20 11 10 39 39 H 1.08996 * 109.62923 * 188.83127 * 20 11 10 40 40 H 1.08997 * 109.49806 * 292.70772 * 21 8 6 41 41 H 1.09006 * 109.49288 * 52.75763 * 21 8 6 42 42 H 1.09002 * 109.46792 * 180.02562 * 22 6 5 43 43 H 1.08998 * 109.47449 * 299.99752 * 22 6 5 44 44 H 1.09005 * 109.46445 * 299.99857 * 25 23 22 45 45 H 1.09002 * 109.47138 * 59.99691 * 25 23 22 46 46 H 1.08998 * 109.47413 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5700 -0.7218 -1.2492 6 6 4.0795 -1.4435 0.0000 7 1 3.7158 -2.4710 -0.0003 8 7 5.5485 -1.4435 0.0005 9 6 6.0753 -2.1287 -1.1873 10 6 7.5962 -2.2668 -1.0607 11 7 8.1667 -0.9351 -0.8068 12 6 9.2019 -0.4577 -1.5654 13 1 9.3193 -0.7873 -2.5872 14 6 10.1003 0.4499 -1.0213 15 7 10.2805 0.4967 0.2817 16 14 11.0533 1.6047 -2.1381 17 1 11.9402 2.4676 -1.3171 18 1 10.1023 2.4539 -2.8994 19 1 11.8755 0.8103 -3.0858 20 6 7.5998 -0.1324 0.2875 21 6 6.0749 -0.0760 0.1040 22 6 3.5695 -0.7223 1.2493 23 6 2.0396 -0.7218 1.2491 24 1 1.6763 -0.2076 2.1389 25 6 1.5290 -2.1641 1.2487 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 1.6765 -0.2072 -2.1393 30 1 1.6766 -1.7488 -1.2494 31 1 3.9336 0.3058 -1.2489 32 1 3.9332 -1.2351 -2.1394 33 1 5.8357 -1.5484 -2.0783 34 1 5.6256 -3.1185 -1.2660 35 1 8.0057 -2.6700 -1.9869 36 1 7.8357 -2.9320 -0.2311 37 1 9.8505 -0.1573 0.8546 38 1 7.8397 -0.5963 1.2442 39 1 8.0117 0.8762 0.2531 40 1 5.8353 0.4759 -0.8049 41 1 5.6245 0.4232 0.9620 42 1 3.9329 -1.2362 2.1392 43 1 3.9333 0.3052 1.2496 44 1 1.8923 -2.6778 0.3586 45 1 1.8921 -2.6782 2.1386 46 1 0.4390 -2.1637 1.2481 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085025727.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:39 Heat of formation + Delta-G solvation = 7.176587 kcal Electronic energy + Delta-G solvation = -21972.320459 eV Core-core repulsion = 19089.479736 eV Total energy + Delta-G solvation = -2882.840723 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.07128 -37.57455 -34.75029 -31.99434 -31.75087 -30.30502 -29.80019 -27.51470 -26.25990 -24.60352 -23.03246 -22.80582 -22.06544 -20.66842 -19.01740 -18.11358 -17.28732 -15.96809 -15.40569 -14.56889 -14.31461 -14.14398 -13.94350 -13.89464 -13.70824 -13.49121 -13.43591 -13.06601 -12.54975 -12.39504 -12.25391 -11.99656 -11.68659 -11.62485 -11.28678 -10.97581 -10.86878 -10.73646 -10.67040 -10.50583 -10.36953 -10.16301 -10.07538 -9.98972 -9.92480 -9.70638 -9.21934 -8.35691 -7.73286 -6.79931 -6.01425 -3.18164 3.51520 3.54454 3.72867 4.31220 4.60771 4.63500 4.64410 4.86101 5.05959 5.15358 5.25480 5.29853 5.33904 5.38782 5.47208 5.51693 5.57270 5.58984 5.70485 5.73774 5.82875 5.86971 5.87906 5.94834 5.99637 6.05344 6.08221 6.09649 6.18467 6.22503 6.24341 6.31078 6.35164 6.40501 6.53510 6.54893 6.64894 6.84476 7.03019 7.22961 7.66908 7.69245 8.04423 8.62519 9.17200 9.89814 10.37505 11.26679 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.034347 B = 0.004544 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.015667 B = 6161.105309 C = 6276.154142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 H 0.067 0.933 4 C -0.109 4.109 5 C -0.153 4.153 6 C 0.086 3.914 7 H 0.077 0.923 8 N -0.527 5.527 9 C 0.044 3.956 10 C 0.150 3.850 11 N -0.601 5.601 12 C -0.349 4.349 13 H 0.054 0.946 14 C -0.024 4.024 15 N -0.917 5.917 16 Si 1.064 2.936 17 H -0.285 1.285 18 H -0.294 1.294 19 H -0.293 1.293 20 C 0.158 3.842 21 C 0.036 3.964 22 C -0.109 4.109 23 C -0.083 4.083 24 H 0.067 0.933 25 C -0.151 4.151 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.031 0.969 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.022 0.978 37 H 0.269 0.731 38 H 0.023 0.977 39 H 0.076 0.924 40 H 0.029 0.971 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.053 0.947 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.876 -2.847 0.220 19.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 H 0.086 0.914 4 C -0.147 4.147 5 C -0.192 4.192 6 C -0.023 4.023 7 H 0.095 0.905 8 N -0.250 5.250 9 C -0.086 4.086 10 C 0.024 3.976 11 N -0.326 5.326 12 C -0.478 4.478 13 H 0.072 0.928 14 C -0.226 4.226 15 N -0.557 5.557 16 Si 0.894 3.106 17 H -0.211 1.211 18 H -0.222 1.222 19 H -0.220 1.220 20 C 0.032 3.968 21 C -0.093 4.093 22 C -0.147 4.147 23 C -0.102 4.102 24 H 0.086 0.914 25 C -0.208 4.208 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.080 0.920 38 H 0.041 0.959 39 H 0.095 0.905 40 H 0.047 0.953 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.576 -1.839 0.595 17.682 hybrid contribution -1.372 -0.880 -0.817 1.823 sum -18.948 -2.718 -0.221 19.143 Atomic orbital electron populations 1.21885 0.95616 1.01741 1.01279 1.21152 0.95044 0.99451 0.95001 0.91441 1.21553 0.95506 1.00525 0.97103 1.22233 0.95584 1.01738 0.99622 1.21757 0.88098 0.98982 0.93482 0.90502 1.62188 1.05140 1.17926 1.39786 1.22590 0.98159 0.96991 0.90816 1.20976 0.89867 0.88385 0.98397 1.44173 1.37938 1.12378 1.38114 1.19973 1.05553 1.28279 0.94019 0.92810 1.25836 0.96478 1.01751 0.98574 1.70769 1.41941 1.38839 1.04173 0.83537 0.75906 0.76493 0.74650 1.21066 1.22178 1.22025 1.21100 0.88356 0.96850 0.90487 1.22872 0.98717 0.88424 0.99259 1.21669 0.93935 1.00953 0.98106 1.21098 0.95413 0.96266 0.97442 0.91445 1.21983 1.00477 0.96342 1.02029 0.92452 0.92918 0.93048 0.92569 0.91888 0.91851 0.92014 0.95102 0.92234 0.92672 0.96003 0.91954 0.95881 0.90524 0.95271 0.91657 0.91277 0.91680 0.92123 0.92839 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.84 37.16 0.33 -0.93 16 2 C -0.09 -0.89 2.50 -90.62 -0.23 -1.12 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.11 -1.18 4.93 -26.73 -0.13 -1.32 16 5 C -0.15 -2.06 4.52 -26.73 -0.12 -2.18 16 6 C 0.09 1.21 2.02 -67.71 -0.14 1.08 16 7 H 0.08 1.06 6.43 -51.93 -0.33 0.73 16 8 N -0.53 -9.41 4.65 -226.05 -1.05 -10.46 16 9 C 0.04 0.81 4.99 -3.70 -0.02 0.79 16 10 C 0.15 3.32 6.69 -3.60 -0.02 3.30 16 11 N -0.60 -15.62 2.88 -171.74 -0.49 -16.11 16 12 C -0.35 -9.99 9.52 -15.06 -0.14 -10.13 16 13 H 0.05 1.54 7.94 -52.49 -0.42 1.13 16 14 C -0.02 -0.70 4.71 -17.43 -0.08 -0.78 16 15 N -0.92 -27.93 12.48 55.49 0.69 -27.24 16 16 Si 1.06 25.61 29.98 -169.99 -5.10 20.52 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 C 0.16 3.84 4.88 -3.37 -0.02 3.82 16 21 C 0.04 0.72 4.83 -3.46 -0.02 0.70 16 22 C -0.11 -1.40 4.38 -26.73 -0.12 -1.51 16 23 C -0.08 -0.87 2.72 -90.62 -0.25 -1.11 16 24 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 25 C -0.15 -1.44 8.15 37.16 0.30 -1.14 16 26 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 31 H 0.06 0.95 6.67 -51.93 -0.35 0.61 16 32 H 0.06 0.89 6.57 -51.93 -0.34 0.54 16 33 H 0.03 0.59 6.72 -51.93 -0.35 0.25 16 34 H 0.06 0.96 8.11 -51.93 -0.42 0.54 16 35 H 0.05 1.20 7.95 -51.93 -0.41 0.78 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.27 8.32 6.64 -40.82 -0.27 8.05 16 38 H 0.02 0.59 7.77 -51.93 -0.40 0.18 16 39 H 0.08 2.06 6.49 -51.93 -0.34 1.72 16 40 H 0.03 0.60 6.79 -51.93 -0.35 0.25 16 41 H 0.07 1.17 5.83 -51.93 -0.30 0.87 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.06 0.89 6.18 -51.93 -0.32 0.57 16 44 H 0.06 0.61 4.81 -51.93 -0.25 0.36 16 45 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.05 0.45 6.43 -51.93 -0.33 0.11 16 LS Contribution 324.29 15.07 4.89 4.89 Total: -1.00 -30.02 324.29 -9.75 -39.77 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -8.04 Total: -0.82 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -0.65 Total: -10.54 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: -0.85 Total: -53.82 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.10 Total: 20.52 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.02 -9.75 -39.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085025727.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.947 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds