Wall clock time and date at job start Mon Mar 30 2020 05:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47421 * 2 1 4 4 C 1.53003 * 109.46753 * 240.00625 * 2 1 3 5 5 C 1.53006 * 109.47187 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47159 * 59.99661 * 5 4 2 7 7 H 1.08998 * 109.46822 * 60.00392 * 6 5 4 8 8 N 1.46900 * 109.46848 * 180.02562 * 6 5 4 9 9 C 1.46901 * 111.00144 * 300.00237 * 8 6 5 10 10 C 1.53239 * 109.33912 * 187.25456 * 9 8 6 11 11 N 1.47077 * 108.52057 * 306.17091 * 10 9 8 12 12 C 1.36939 * 120.87789 * 231.18368 * 11 10 9 13 13 H 1.08001 * 119.99662 * 28.36728 * 12 11 10 14 14 C 1.38813 * 120.00229 * 208.35959 * 12 11 10 15 15 N 1.31624 * 119.99337 * 24.49995 * 14 12 11 16 16 Si 1.86792 * 120.00305 * 204.49525 * 14 12 11 17 17 H 1.48500 * 109.47427 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.46965 * 60.00503 * 16 14 12 19 19 H 1.48501 * 109.47290 * 300.00687 * 16 14 12 20 20 C 1.47078 * 118.23956 * 51.45854 * 11 10 9 21 21 C 1.46898 * 111.00109 * 64.30257 * 8 6 5 22 22 C 1.53000 * 109.46991 * 300.00256 * 6 5 4 23 23 C 1.52995 * 109.47114 * 60.00317 * 22 6 5 24 24 H 1.09009 * 109.47155 * 180.02562 * 23 22 6 25 25 C 1.52998 * 109.47590 * 59.99909 * 23 22 6 26 26 H 1.09001 * 109.46977 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46323 * 299.99491 * 1 2 3 28 28 H 1.08992 * 109.47452 * 59.99404 * 1 2 3 29 29 H 1.09002 * 109.47148 * 59.99773 * 4 2 1 30 30 H 1.09001 * 109.47056 * 299.99556 * 4 2 1 31 31 H 1.09001 * 109.46662 * 299.99677 * 5 4 2 32 32 H 1.08998 * 109.46981 * 180.02562 * 5 4 2 33 33 H 1.08995 * 109.49310 * 67.29340 * 9 8 6 34 34 H 1.09001 * 109.51016 * 307.22508 * 9 8 6 35 35 H 1.09000 * 109.62847 * 186.46002 * 10 9 8 36 36 H 1.09005 * 109.62496 * 65.88157 * 10 9 8 37 37 H 0.96999 * 120.00112 * 5.78801 * 15 14 12 38 38 H 1.09000 * 109.62849 * 68.25591 * 20 11 10 39 39 H 1.08996 * 109.62923 * 188.83127 * 20 11 10 40 40 H 1.08997 * 109.49806 * 292.70772 * 21 8 6 41 41 H 1.09006 * 109.49288 * 52.75763 * 21 8 6 42 42 H 1.09002 * 109.46792 * 180.02562 * 22 6 5 43 43 H 1.08998 * 109.47449 * 299.99752 * 22 6 5 44 44 H 1.09005 * 109.46445 * 299.99857 * 25 23 22 45 45 H 1.09002 * 109.47138 * 59.99691 * 25 23 22 46 46 H 1.08998 * 109.47413 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5700 -0.7218 -1.2492 6 6 4.0795 -1.4435 0.0000 7 1 3.7158 -2.4710 -0.0003 8 7 5.5485 -1.4435 0.0005 9 6 6.0753 -2.1287 -1.1873 10 6 7.5962 -2.2668 -1.0607 11 7 8.1667 -0.9351 -0.8068 12 6 9.2019 -0.4577 -1.5654 13 1 9.3193 -0.7873 -2.5872 14 6 10.1003 0.4499 -1.0213 15 7 10.2805 0.4967 0.2817 16 14 11.0533 1.6047 -2.1381 17 1 11.9402 2.4676 -1.3171 18 1 10.1023 2.4539 -2.8994 19 1 11.8755 0.8103 -3.0858 20 6 7.5998 -0.1324 0.2875 21 6 6.0749 -0.0760 0.1040 22 6 3.5695 -0.7223 1.2493 23 6 2.0396 -0.7218 1.2491 24 1 1.6763 -0.2076 2.1389 25 6 1.5290 -2.1641 1.2487 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 1.6765 -0.2072 -2.1393 30 1 1.6766 -1.7488 -1.2494 31 1 3.9336 0.3058 -1.2489 32 1 3.9332 -1.2351 -2.1394 33 1 5.8357 -1.5484 -2.0783 34 1 5.6256 -3.1185 -1.2660 35 1 8.0057 -2.6700 -1.9869 36 1 7.8357 -2.9320 -0.2311 37 1 9.8505 -0.1573 0.8546 38 1 7.8397 -0.5963 1.2442 39 1 8.0117 0.8762 0.2531 40 1 5.8353 0.4759 -0.8049 41 1 5.6245 0.4232 0.9620 42 1 3.9329 -1.2362 2.1392 43 1 3.9333 0.3052 1.2496 44 1 1.8923 -2.6778 0.3586 45 1 1.8921 -2.6782 2.1386 46 1 0.4390 -2.1637 1.2481 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085025727.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:39 Heat of formation + Delta-G solvation = -10.338346 kcal Electronic energy + Delta-G solvation = -21973.079964 eV Core-core repulsion = 19089.479736 eV Total energy + Delta-G solvation = -2883.600227 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.22047 -39.04819 -36.44282 -33.66735 -32.71436 -31.84175 -31.46766 -28.63666 -27.67604 -25.95140 -24.65223 -24.34627 -23.28316 -21.94632 -20.59612 -19.42342 -19.03272 -17.30899 -16.51084 -16.09530 -15.79843 -15.65324 -15.52830 -15.37019 -15.06310 -14.92989 -14.84654 -14.19475 -13.80627 -13.52852 -13.42271 -13.30053 -12.76435 -12.68600 -12.66774 -12.51200 -12.29539 -12.17268 -12.06618 -12.00121 -11.89400 -11.67216 -11.51073 -11.30069 -11.16601 -10.99721 -10.76081 -10.50529 -9.25130 -8.90097 -8.26561 -5.43408 1.56174 1.63938 1.83219 2.63462 2.93656 3.19882 3.51788 3.66948 3.75249 3.92854 4.08215 4.15159 4.21815 4.25862 4.37503 4.41672 4.44075 4.48730 4.51008 4.56377 4.58293 4.74062 4.76395 4.77127 4.83371 4.87156 4.98015 5.02077 5.04743 5.08464 5.11242 5.13018 5.20619 5.21869 5.29135 5.31635 5.37944 5.47800 5.52879 5.68250 5.78239 6.15406 6.27814 6.36454 7.02292 7.74522 8.21906 8.97230 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.034347 B = 0.004544 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.015667 B = 6161.105309 C = 6276.154142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 H 0.056 0.944 4 C -0.103 4.103 5 C -0.147 4.147 6 C 0.089 3.911 7 H 0.090 0.910 8 N -0.535 5.535 9 C 0.057 3.943 10 C 0.145 3.855 11 N -0.620 5.620 12 C -0.360 4.360 13 H 0.050 0.950 14 C -0.074 4.074 15 N -0.941 5.941 16 Si 1.116 2.884 17 H -0.290 1.290 18 H -0.281 1.281 19 H -0.275 1.275 20 C 0.166 3.834 21 C 0.056 3.944 22 C -0.106 4.106 23 C -0.078 4.078 24 H 0.076 0.924 25 C -0.149 4.149 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.025 0.975 34 H 0.091 0.909 35 H 0.055 0.945 36 H 0.015 0.985 37 H 0.253 0.747 38 H 0.004 0.996 39 H 0.043 0.957 40 H 0.019 0.981 41 H 0.083 0.917 42 H 0.062 0.938 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.052 0.948 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.236 -3.264 -0.479 21.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 H 0.075 0.925 4 C -0.141 4.141 5 C -0.186 4.186 6 C -0.019 4.019 7 H 0.108 0.892 8 N -0.259 5.259 9 C -0.073 4.073 10 C 0.020 3.980 11 N -0.346 5.346 12 C -0.490 4.490 13 H 0.068 0.932 14 C -0.271 4.271 15 N -0.583 5.583 16 Si 0.940 3.060 17 H -0.215 1.215 18 H -0.207 1.207 19 H -0.200 1.200 20 C 0.040 3.960 21 C -0.073 4.073 22 C -0.144 4.144 23 C -0.097 4.097 24 H 0.094 0.906 25 C -0.206 4.206 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.033 0.967 37 H 0.063 0.937 38 H 0.022 0.978 39 H 0.062 0.938 40 H 0.037 0.963 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.978 -2.287 -0.112 20.109 hybrid contribution -0.650 -0.821 -0.575 1.195 sum -20.628 -3.108 -0.687 20.872 Atomic orbital electron populations 1.21844 0.93915 1.02477 1.01852 1.21136 0.96408 0.98639 0.94376 0.92539 1.21522 0.93222 1.01498 0.97828 1.22154 0.97672 1.00153 0.98657 1.21847 0.85344 1.00122 0.94601 0.89174 1.62148 1.07761 1.16406 1.39561 1.22404 0.95439 0.98622 0.90786 1.21127 0.92436 0.86498 0.97969 1.44434 1.37855 1.14141 1.38135 1.20247 1.06145 1.28413 0.94151 0.93229 1.27267 0.97528 1.03237 0.99034 1.70896 1.43290 1.39078 1.05030 0.82845 0.75052 0.74811 0.73254 1.21548 1.20695 1.20028 1.20917 0.91322 0.94542 0.89269 1.22530 0.95364 0.89865 0.99528 1.21648 0.95982 0.99760 0.97037 1.21066 0.93275 0.97304 0.98031 0.90585 1.21964 1.01503 0.95269 1.01852 0.91590 0.92283 0.92655 0.91974 0.90677 0.93822 0.92835 0.95707 0.89095 0.92673 0.96730 0.93714 0.97810 0.93810 0.96262 0.89871 0.91884 0.92956 0.92433 0.92879 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.84 71.98 0.64 -1.34 16 2 C -0.09 -1.54 2.50 -10.79 -0.03 -1.57 16 3 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 4 C -0.10 -1.97 4.93 30.60 0.15 -1.82 16 5 C -0.15 -3.74 4.52 30.60 0.14 -3.60 16 6 C 0.09 2.36 2.02 44.92 0.09 2.45 16 7 H 0.09 2.23 6.43 -2.39 -0.02 2.21 16 8 N -0.54 -18.68 4.65 -869.09 -4.04 -22.72 16 9 C 0.06 2.03 4.99 86.38 0.43 2.47 16 10 C 0.15 6.46 6.69 86.35 0.58 7.04 16 11 N -0.62 -33.04 2.88 -697.25 -2.01 -35.04 16 12 C -0.36 -21.01 9.52 84.03 0.80 -20.21 16 13 H 0.05 2.88 7.94 -2.91 -0.02 2.86 16 14 C -0.07 -4.36 4.71 84.86 0.40 -3.96 16 15 N -0.94 -59.14 12.48 21.65 0.27 -58.87 16 16 Si 1.12 52.11 29.98 68.60 2.06 54.17 16 17 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 C 0.17 8.34 4.88 86.50 0.42 8.76 16 21 C 0.06 2.24 4.83 86.54 0.42 2.66 16 22 C -0.11 -2.57 4.38 30.59 0.13 -2.43 16 23 C -0.08 -1.42 2.72 -10.80 -0.03 -1.45 16 24 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 25 C -0.15 -2.35 8.15 71.98 0.59 -1.77 16 26 H 0.07 0.81 6.43 -2.39 -0.02 0.79 16 27 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.29 6.43 -2.39 -0.02 1.28 16 31 H 0.04 1.28 6.67 -2.39 -0.02 1.26 16 32 H 0.05 1.45 6.57 -2.39 -0.02 1.43 16 33 H 0.02 0.93 6.72 -2.39 -0.02 0.91 16 34 H 0.09 2.71 8.11 -2.39 -0.02 2.70 16 35 H 0.05 2.40 7.95 -2.39 -0.02 2.38 16 36 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.25 16.34 6.64 -92.71 -0.62 15.73 16 38 H 0.00 0.21 7.77 -2.39 -0.02 0.19 16 39 H 0.04 2.46 6.49 -2.39 -0.02 2.44 16 40 H 0.02 0.80 6.79 -2.39 -0.02 0.79 16 41 H 0.08 2.99 5.83 -2.38 -0.01 2.98 16 42 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.05 1.39 6.18 -2.39 -0.01 1.37 16 44 H 0.06 0.95 4.81 -2.38 -0.01 0.94 16 45 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.07 0.90 6.43 -2.39 -0.02 0.88 16 Total: -1.00 -65.98 324.29 2.10 -63.89 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 1.09 Total: 13.35 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: 4.73 Total: -14.78 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -5.78 Total: -116.63 kcal Atomic # 14 Polarization: 52.11 SS G_CDS: 2.06 Total: 54.17 kcal Total: -65.98 2.10 -63.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085025727.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.550 kcal (2) G-P(sol) polarization free energy of solvation -65.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds