Wall clock time and date at job start Mon Mar 30 2020 05:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47604 * 2 1 4 4 C 1.53000 * 109.46859 * 119.99811 * 2 1 3 5 5 C 1.53004 * 109.47148 * 59.99876 * 4 2 1 6 6 C 1.52998 * 109.47133 * 60.00053 * 5 4 2 7 7 H 1.09001 * 109.47459 * 59.99909 * 6 5 4 8 8 N 1.46897 * 109.47016 * 179.97438 * 6 5 4 9 9 C 1.46892 * 111.00313 * 299.99910 * 8 6 5 10 10 C 1.53239 * 109.34401 * 187.25172 * 9 8 6 11 11 N 1.47086 * 108.52267 * 306.17354 * 10 9 8 12 12 C 1.36937 * 120.87873 * 231.18564 * 11 10 9 13 13 H 1.08002 * 119.99267 * 153.27729 * 12 11 10 14 14 C 1.38807 * 120.00177 * 333.27228 * 12 11 10 15 15 N 1.31619 * 120.00064 * 334.85740 * 14 12 11 16 16 Si 1.86803 * 119.99804 * 154.84960 * 14 12 11 17 17 H 1.48495 * 109.47129 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47200 * 240.00031 * 16 14 12 19 19 H 1.48505 * 109.46741 * 120.00390 * 16 14 12 20 20 C 1.47076 * 118.23617 * 51.45264 * 11 10 9 21 21 C 1.46899 * 110.99738 * 64.30445 * 8 6 5 22 22 C 1.53000 * 109.47060 * 300.00000 * 6 5 4 23 23 C 1.52994 * 109.47168 * 60.00113 * 22 6 5 24 24 H 1.09002 * 109.47544 * 179.97438 * 23 22 6 25 25 C 1.53001 * 109.47336 * 59.99846 * 23 22 6 26 26 H 1.08998 * 109.47268 * 300.00410 * 1 2 3 27 27 H 1.09005 * 109.47442 * 60.00288 * 1 2 3 28 28 H 1.08994 * 109.47604 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47455 * 299.99691 * 4 2 1 30 30 H 1.09001 * 109.46909 * 179.97438 * 4 2 1 31 31 H 1.08994 * 109.47001 * 300.00095 * 5 4 2 32 32 H 1.09008 * 109.46856 * 180.02562 * 5 4 2 33 33 H 1.09006 * 109.49457 * 67.29466 * 9 8 6 34 34 H 1.09000 * 109.52029 * 307.22608 * 9 8 6 35 35 H 1.08998 * 109.63263 * 186.46048 * 10 9 8 36 36 H 1.09010 * 109.78845 * 65.97356 * 10 9 8 37 37 H 0.96997 * 120.00205 * 354.23660 * 15 14 12 38 38 H 1.08999 * 109.63158 * 68.25031 * 20 11 10 39 39 H 1.08999 * 109.62994 * 188.83633 * 20 11 10 40 40 H 1.09004 * 109.49378 * 292.69866 * 21 8 6 41 41 H 1.08994 * 109.49875 * 52.75951 * 21 8 6 42 42 H 1.08998 * 109.47000 * 179.97438 * 22 6 5 43 43 H 1.09001 * 109.46909 * 300.00245 * 22 6 5 44 44 H 1.08996 * 109.47471 * 300.00167 * 25 23 22 45 45 H 1.09000 * 109.46658 * 60.00306 * 25 23 22 46 46 H 1.09006 * 109.47364 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5298 -2.1637 1.2493 6 6 2.0398 -2.8851 0.0002 7 1 3.1298 -2.8851 0.0001 8 7 1.5506 -4.2702 0.0005 9 6 2.0220 -4.9947 1.1882 10 6 1.6455 -6.4748 1.0625 11 7 0.1997 -6.5693 0.8095 12 6 -0.5948 -7.3861 1.5691 13 1 -1.6428 -7.1565 1.6931 14 6 -0.0532 -8.5089 2.1795 15 7 1.0231 -9.0763 1.6774 16 14 -0.8517 -9.2147 3.7137 17 1 -2.0400 -8.3997 4.0728 18 1 0.1223 -9.1910 4.8343 19 1 -1.2726 -10.6148 3.4532 20 6 -0.3691 -5.7679 -0.2847 21 6 0.0858 -4.3111 -0.1021 22 6 1.5299 -2.1638 -1.2491 23 6 2.0399 -0.7214 -1.2492 24 1 1.6771 -0.2077 -2.1394 25 6 3.5699 -0.7214 -1.2491 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6766 -0.2074 2.1393 30 1 3.1299 -0.7216 1.2491 31 1 0.4399 -2.1637 1.2493 32 1 1.8928 -2.6774 2.1397 33 1 1.5551 -4.5751 2.0794 34 1 3.1051 -4.9003 1.2663 35 1 1.8899 -6.9948 1.9887 36 1 2.1924 -6.9256 0.2342 37 1 1.3892 -8.7622 0.8359 38 1 -0.0121 -6.1488 -1.2415 39 1 -1.4573 -5.8202 -0.2495 40 1 -0.3542 -3.9011 0.8070 41 1 -0.2354 -3.7205 -0.9600 42 1 1.8936 -2.6775 -2.1390 43 1 0.4399 -2.1638 -1.2491 44 1 3.9333 -1.2352 -0.3592 45 1 3.9332 -1.2353 -2.1391 46 1 3.9334 0.3063 -1.2496 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085025729.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:41 Heat of formation + Delta-G solvation = 9.986102 kcal Electronic energy + Delta-G solvation = -22158.996160 eV Core-core repulsion = 19276.277267 eV Total energy + Delta-G solvation = -2882.718893 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.24252 -37.54196 -34.62455 -31.97790 -31.62773 -30.26410 -29.65011 -28.17072 -25.93923 -24.56602 -23.13202 -22.82723 -21.96321 -20.93853 -18.98399 -17.67977 -17.25554 -16.23502 -15.25567 -14.88048 -14.45446 -14.14934 -13.93477 -13.79628 -13.63069 -13.50375 -13.17363 -13.14721 -12.59641 -12.31330 -12.19723 -12.02566 -11.63809 -11.59577 -11.33604 -11.01791 -10.96798 -10.72133 -10.63839 -10.42676 -10.35941 -10.17599 -10.08502 -9.97919 -9.92683 -9.67403 -9.23525 -8.34698 -7.72895 -6.80765 -6.01883 -3.16611 3.52755 3.55739 3.69139 4.30265 4.60823 4.63784 4.67213 4.81555 5.12675 5.18597 5.25592 5.29200 5.31090 5.37252 5.47199 5.49693 5.60055 5.64252 5.72561 5.76029 5.82524 5.85565 5.91338 5.95328 5.99022 6.01301 6.09305 6.14288 6.17197 6.19813 6.28324 6.29170 6.34664 6.44997 6.47181 6.59196 6.64075 6.84383 7.03441 7.23244 7.67100 7.69271 8.04249 8.62147 9.17040 9.90006 10.37172 11.26713 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.034849 B = 0.004730 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.283241 B = 5918.287062 C = 6033.367957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.086 4.086 3 H 0.064 0.936 4 C -0.110 4.110 5 C -0.154 4.154 6 C 0.085 3.915 7 H 0.077 0.923 8 N -0.527 5.527 9 C 0.041 3.959 10 C 0.157 3.843 11 N -0.601 5.601 12 C -0.348 4.348 13 H 0.055 0.945 14 C -0.025 4.025 15 N -0.919 5.919 16 Si 1.068 2.932 17 H -0.293 1.293 18 H -0.290 1.290 19 H -0.294 1.294 20 C 0.150 3.850 21 C 0.040 3.960 22 C -0.109 4.109 23 C -0.084 4.084 24 H 0.067 0.933 25 C -0.150 4.150 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.031 0.969 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.023 0.977 37 H 0.270 0.730 38 H 0.022 0.978 39 H 0.054 0.946 40 H 0.029 0.971 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.644 18.396 -4.052 19.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.104 4.104 3 H 0.083 0.917 4 C -0.148 4.148 5 C -0.193 4.193 6 C -0.023 4.023 7 H 0.095 0.905 8 N -0.250 5.250 9 C -0.088 4.088 10 C 0.031 3.969 11 N -0.326 5.326 12 C -0.477 4.477 13 H 0.073 0.927 14 C -0.227 4.227 15 N -0.559 5.559 16 Si 0.898 3.102 17 H -0.219 1.219 18 H -0.217 1.217 19 H -0.221 1.221 20 C 0.024 3.976 21 C -0.090 4.090 22 C -0.147 4.147 23 C -0.103 4.103 24 H 0.085 0.915 25 C -0.207 4.207 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.041 0.959 37 H 0.081 0.919 38 H 0.040 0.960 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.943 16.948 -3.271 17.510 hybrid contribution -0.523 1.620 -0.457 1.763 sum 2.420 18.568 -3.728 19.093 Atomic orbital electron populations 1.21939 0.95478 1.02322 1.01095 1.21111 0.95681 0.98623 0.94992 0.91712 1.21537 1.00517 0.95676 0.97103 1.22265 1.01650 0.95708 0.99674 1.21755 0.99452 0.87702 0.93431 0.90476 1.62183 1.10744 1.11725 1.40352 1.22697 0.98200 0.97504 0.90379 1.21017 0.84873 0.91035 1.00008 1.44186 1.03870 1.50054 1.34491 1.20029 0.94373 1.05099 1.28163 0.92683 1.25802 0.99412 0.93043 1.04463 1.70707 1.25005 1.39443 1.20759 0.83492 0.75034 0.75460 0.76189 1.21940 1.21723 1.22124 1.21070 0.96450 0.88902 0.91211 1.22756 0.87588 0.99456 0.99171 1.21696 1.00896 0.94021 0.98079 1.21110 0.95685 0.96073 0.97449 0.91486 1.21937 0.95456 1.01163 1.02184 0.93066 0.93045 0.91869 0.92548 0.91890 0.91556 0.91997 0.95093 0.92241 0.90339 0.95920 0.91894 0.95989 0.92739 0.95268 0.91698 0.91447 0.91448 0.92013 0.92729 0.93212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.50 37.15 0.32 -1.20 16 2 C -0.09 -0.85 2.72 -90.62 -0.25 -1.09 16 3 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.11 -1.20 5.18 -26.73 -0.14 -1.34 16 5 C -0.15 -2.06 4.25 -26.73 -0.11 -2.18 16 6 C 0.09 1.20 2.01 -67.72 -0.14 1.07 16 7 H 0.08 1.09 6.43 -51.93 -0.33 0.76 16 8 N -0.53 -9.34 4.65 -226.05 -1.05 -10.39 16 9 C 0.04 0.82 4.99 -3.70 -0.02 0.80 16 10 C 0.16 3.80 4.85 -3.60 -0.02 3.78 16 11 N -0.60 -15.54 2.89 -171.72 -0.50 -16.04 16 12 C -0.35 -9.91 9.53 -15.06 -0.14 -10.06 16 13 H 0.06 1.58 7.94 -52.49 -0.42 1.17 16 14 C -0.03 -0.73 4.70 -17.43 -0.08 -0.81 16 15 N -0.92 -27.95 12.43 55.49 0.69 -27.26 16 16 Si 1.07 25.71 29.99 -169.99 -5.10 20.61 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 20 C 0.15 3.30 6.72 -3.36 -0.02 3.28 16 21 C 0.04 0.72 4.83 -3.46 -0.02 0.71 16 22 C -0.11 -1.34 4.11 -26.73 -0.11 -1.45 16 23 C -0.08 -0.85 2.72 -90.62 -0.25 -1.10 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 C -0.15 -1.44 8.50 37.16 0.32 -1.12 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.72 4.81 -51.93 -0.25 0.47 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.66 6.43 -51.93 -0.33 0.32 16 31 H 0.07 0.96 4.96 -51.93 -0.26 0.70 16 32 H 0.06 0.91 6.57 -51.92 -0.34 0.57 16 33 H 0.03 0.63 6.72 -51.93 -0.35 0.28 16 34 H 0.06 1.07 8.11 -51.93 -0.42 0.65 16 35 H 0.08 2.10 6.40 -51.93 -0.33 1.77 16 36 H 0.02 0.58 7.78 -51.92 -0.40 0.17 16 37 H 0.27 8.33 6.63 -40.82 -0.27 8.06 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.05 1.18 7.95 -51.93 -0.41 0.76 16 40 H 0.03 0.56 6.80 -51.93 -0.35 0.21 16 41 H 0.06 1.04 5.83 -51.93 -0.30 0.73 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.85 4.48 -51.93 -0.23 0.62 16 44 H 0.06 0.63 4.81 -51.93 -0.25 0.38 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 320.80 15.07 4.83 4.83 Total: -1.00 -29.88 320.80 -9.64 -39.52 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -7.86 Total: -0.57 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -0.66 Total: -10.71 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.86 Total: -53.69 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -5.10 Total: 20.61 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.88 -9.64 -39.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085025729.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.509 kcal (2) G-P(sol) polarization free energy of solvation -29.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds