Wall clock time and date at job start Mon Mar 30 2020 05:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47604 * 2 1 4 4 C 1.53000 * 109.46859 * 119.99811 * 2 1 3 5 5 C 1.53004 * 109.47148 * 59.99876 * 4 2 1 6 6 C 1.52998 * 109.47133 * 60.00053 * 5 4 2 7 7 H 1.09001 * 109.47459 * 59.99909 * 6 5 4 8 8 N 1.46897 * 109.47016 * 179.97438 * 6 5 4 9 9 C 1.46892 * 111.00313 * 299.99910 * 8 6 5 10 10 C 1.53239 * 109.34401 * 187.25172 * 9 8 6 11 11 N 1.47086 * 108.52267 * 306.17354 * 10 9 8 12 12 C 1.36937 * 120.87873 * 231.18564 * 11 10 9 13 13 H 1.08002 * 119.99267 * 153.27729 * 12 11 10 14 14 C 1.38807 * 120.00177 * 333.27228 * 12 11 10 15 15 N 1.31619 * 120.00064 * 334.85740 * 14 12 11 16 16 Si 1.86803 * 119.99804 * 154.84960 * 14 12 11 17 17 H 1.48495 * 109.47129 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47200 * 240.00031 * 16 14 12 19 19 H 1.48505 * 109.46741 * 120.00390 * 16 14 12 20 20 C 1.47076 * 118.23617 * 51.45264 * 11 10 9 21 21 C 1.46899 * 110.99738 * 64.30445 * 8 6 5 22 22 C 1.53000 * 109.47060 * 300.00000 * 6 5 4 23 23 C 1.52994 * 109.47168 * 60.00113 * 22 6 5 24 24 H 1.09002 * 109.47544 * 179.97438 * 23 22 6 25 25 C 1.53001 * 109.47336 * 59.99846 * 23 22 6 26 26 H 1.08998 * 109.47268 * 300.00410 * 1 2 3 27 27 H 1.09005 * 109.47442 * 60.00288 * 1 2 3 28 28 H 1.08994 * 109.47604 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47455 * 299.99691 * 4 2 1 30 30 H 1.09001 * 109.46909 * 179.97438 * 4 2 1 31 31 H 1.08994 * 109.47001 * 300.00095 * 5 4 2 32 32 H 1.09008 * 109.46856 * 180.02562 * 5 4 2 33 33 H 1.09006 * 109.49457 * 67.29466 * 9 8 6 34 34 H 1.09000 * 109.52029 * 307.22608 * 9 8 6 35 35 H 1.08998 * 109.63263 * 186.46048 * 10 9 8 36 36 H 1.09010 * 109.78845 * 65.97356 * 10 9 8 37 37 H 0.96997 * 120.00205 * 354.23660 * 15 14 12 38 38 H 1.08999 * 109.63158 * 68.25031 * 20 11 10 39 39 H 1.08999 * 109.62994 * 188.83633 * 20 11 10 40 40 H 1.09004 * 109.49378 * 292.69866 * 21 8 6 41 41 H 1.08994 * 109.49875 * 52.75951 * 21 8 6 42 42 H 1.08998 * 109.47000 * 179.97438 * 22 6 5 43 43 H 1.09001 * 109.46909 * 300.00245 * 22 6 5 44 44 H 1.08996 * 109.47471 * 300.00167 * 25 23 22 45 45 H 1.09000 * 109.46658 * 60.00306 * 25 23 22 46 46 H 1.09006 * 109.47364 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5298 -2.1637 1.2493 6 6 2.0398 -2.8851 0.0002 7 1 3.1298 -2.8851 0.0001 8 7 1.5506 -4.2702 0.0005 9 6 2.0220 -4.9947 1.1882 10 6 1.6455 -6.4748 1.0625 11 7 0.1997 -6.5693 0.8095 12 6 -0.5948 -7.3861 1.5691 13 1 -1.6428 -7.1565 1.6931 14 6 -0.0532 -8.5089 2.1795 15 7 1.0231 -9.0763 1.6774 16 14 -0.8517 -9.2147 3.7137 17 1 -2.0400 -8.3997 4.0728 18 1 0.1223 -9.1910 4.8343 19 1 -1.2726 -10.6148 3.4532 20 6 -0.3691 -5.7679 -0.2847 21 6 0.0858 -4.3111 -0.1021 22 6 1.5299 -2.1638 -1.2491 23 6 2.0399 -0.7214 -1.2492 24 1 1.6771 -0.2077 -2.1394 25 6 3.5699 -0.7214 -1.2491 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6766 -0.2074 2.1393 30 1 3.1299 -0.7216 1.2491 31 1 0.4399 -2.1637 1.2493 32 1 1.8928 -2.6774 2.1397 33 1 1.5551 -4.5751 2.0794 34 1 3.1051 -4.9003 1.2663 35 1 1.8899 -6.9948 1.9887 36 1 2.1924 -6.9256 0.2342 37 1 1.3892 -8.7622 0.8359 38 1 -0.0121 -6.1488 -1.2415 39 1 -1.4573 -5.8202 -0.2495 40 1 -0.3542 -3.9011 0.8070 41 1 -0.2354 -3.7205 -0.9600 42 1 1.8936 -2.6775 -2.1390 43 1 0.4399 -2.1638 -1.2491 44 1 3.9333 -1.2352 -0.3592 45 1 3.9332 -1.2353 -2.1391 46 1 3.9334 0.3063 -1.2496 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085025729.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:41 Heat of formation + Delta-G solvation = -7.483987 kcal Electronic energy + Delta-G solvation = -22159.753720 eV Core-core repulsion = 19276.277267 eV Total energy + Delta-G solvation = -2883.476453 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.35588 -39.05458 -36.34158 -33.45259 -32.85293 -31.91445 -31.01398 -29.27234 -27.66438 -25.55240 -24.86198 -24.43851 -23.05341 -22.23798 -20.65905 -19.37350 -18.57011 -17.42507 -16.48563 -16.17270 -15.88723 -15.71382 -15.55053 -15.38396 -15.32818 -14.77073 -14.44955 -14.38524 -13.78232 -13.45618 -13.31360 -13.18991 -13.02378 -12.76839 -12.64461 -12.52762 -12.23390 -12.07466 -12.06159 -11.98751 -11.88102 -11.79318 -11.59112 -11.33125 -10.99784 -10.96838 -10.71857 -10.49990 -9.24198 -8.90008 -8.26864 -5.41366 1.56460 1.64745 1.80945 2.63303 2.94029 3.19782 3.51853 3.69263 3.77366 3.89431 4.15544 4.18969 4.21778 4.27115 4.35878 4.41214 4.44747 4.46590 4.49597 4.57559 4.63111 4.69696 4.75356 4.80872 4.81964 4.91980 4.96118 5.02553 5.05291 5.08002 5.10044 5.14236 5.18714 5.21977 5.30019 5.37126 5.39000 5.46021 5.57227 5.66566 5.78278 6.16548 6.28677 6.36593 7.02102 7.75088 8.21899 8.97584 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.034849 B = 0.004730 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.283241 B = 5918.287062 C = 6033.367957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.082 4.082 3 H 0.082 0.918 4 C -0.106 4.106 5 C -0.148 4.148 6 C 0.088 3.912 7 H 0.081 0.919 8 N -0.535 5.535 9 C 0.058 3.942 10 C 0.164 3.836 11 N -0.620 5.620 12 C -0.357 4.357 13 H 0.050 0.950 14 C -0.075 4.075 15 N -0.942 5.942 16 Si 1.120 2.880 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.289 1.289 20 C 0.145 3.855 21 C 0.056 3.944 22 C -0.105 4.105 23 C -0.079 4.079 24 H 0.080 0.920 25 C -0.149 4.149 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.023 0.977 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.004 0.996 37 H 0.254 0.746 38 H 0.015 0.985 39 H 0.054 0.946 40 H 0.021 0.979 41 H 0.093 0.907 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.585 20.888 -4.140 21.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.101 4.101 3 H 0.101 0.899 4 C -0.144 4.144 5 C -0.187 4.187 6 C -0.020 4.020 7 H 0.099 0.901 8 N -0.258 5.258 9 C -0.071 4.071 10 C 0.038 3.962 11 N -0.345 5.345 12 C -0.487 4.487 13 H 0.068 0.932 14 C -0.271 4.271 15 N -0.585 5.585 16 Si 0.944 3.056 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.216 1.216 20 C 0.019 3.981 21 C -0.073 4.073 22 C -0.142 4.142 23 C -0.098 4.098 24 H 0.098 0.902 25 C -0.206 4.206 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.042 0.958 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.022 0.978 37 H 0.063 0.937 38 H 0.033 0.967 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.112 0.888 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.883 19.482 -3.383 19.983 hybrid contribution -0.510 0.868 -0.508 1.128 sum 2.372 20.351 -3.891 20.855 Atomic orbital electron populations 1.21928 0.95581 1.01440 1.01841 1.21114 0.95539 0.99316 0.94084 0.89926 1.21516 1.00925 0.93827 0.98103 1.22176 1.00892 0.97345 0.98304 1.21836 0.99620 0.85589 0.94958 0.90082 1.62139 1.10333 1.14262 1.39087 1.22384 0.99222 0.94480 0.91031 1.20837 0.84117 0.93716 0.97507 1.44438 1.04305 1.50203 1.35543 1.20283 0.94599 1.05368 1.28408 0.93236 1.27217 0.99476 0.93609 1.06839 1.70837 1.26475 1.40585 1.20557 0.82807 0.74881 0.75167 0.72750 1.19984 1.21216 1.21619 1.21227 0.96411 0.90732 0.89719 1.22530 0.87972 0.96784 0.99994 1.21660 1.00646 0.95362 0.96552 1.21091 0.96102 0.94388 0.98203 0.90159 1.21924 0.94871 1.02068 1.01774 0.92768 0.91945 0.93511 0.91968 0.91168 0.92609 0.93728 0.95838 0.90352 0.93563 0.97842 0.93651 0.96712 0.92799 0.96036 0.88848 0.92004 0.91756 0.92760 0.92833 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.50 71.98 0.61 -1.98 16 2 C -0.08 -1.35 2.72 -10.79 -0.03 -1.38 16 3 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 4 C -0.11 -2.02 5.18 30.60 0.16 -1.86 16 5 C -0.15 -3.75 4.25 30.59 0.13 -3.62 16 6 C 0.09 2.33 2.01 44.92 0.09 2.42 16 7 H 0.08 2.13 6.43 -2.39 -0.02 2.12 16 8 N -0.53 -18.59 4.65 -869.09 -4.04 -22.63 16 9 C 0.06 2.31 4.99 86.38 0.43 2.74 16 10 C 0.16 8.24 4.85 86.35 0.42 8.66 16 11 N -0.62 -32.86 2.89 -697.21 -2.02 -34.87 16 12 C -0.36 -20.79 9.53 84.03 0.80 -19.98 16 13 H 0.05 2.89 7.94 -2.91 -0.02 2.86 16 14 C -0.08 -4.40 4.70 84.86 0.40 -4.00 16 15 N -0.94 -59.06 12.43 21.65 0.27 -58.79 16 16 Si 1.12 52.27 29.99 68.60 2.06 54.32 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 19 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 20 C 0.14 6.43 6.72 86.51 0.58 7.01 16 21 C 0.06 2.01 4.83 86.54 0.42 2.43 16 22 C -0.10 -2.33 4.11 30.59 0.13 -2.20 16 23 C -0.08 -1.34 2.72 -10.79 -0.03 -1.37 16 24 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 25 C -0.15 -2.38 8.50 71.98 0.61 -1.77 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.05 0.96 4.81 -2.39 -0.01 0.95 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.26 6.43 -2.39 -0.02 1.25 16 31 H 0.06 1.54 4.96 -2.39 -0.01 1.53 16 32 H 0.04 1.27 6.57 -2.38 -0.02 1.26 16 33 H 0.02 0.97 6.72 -2.38 -0.02 0.95 16 34 H 0.08 2.79 8.11 -2.39 -0.02 2.77 16 35 H 0.05 2.59 6.40 -2.39 -0.02 2.57 16 36 H 0.00 0.19 7.78 -2.38 -0.02 0.17 16 37 H 0.25 16.34 6.63 -92.71 -0.61 15.72 16 38 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.05 2.35 7.95 -2.39 -0.02 2.33 16 40 H 0.02 0.81 6.80 -2.39 -0.02 0.80 16 41 H 0.09 2.83 5.83 -2.39 -0.01 2.81 16 42 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.06 1.48 4.48 -2.39 -0.01 1.47 16 44 H 0.05 0.95 4.81 -2.39 -0.01 0.94 16 45 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 Total: -1.00 -65.51 320.80 2.08 -63.43 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 1.10 Total: 13.47 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: 4.72 Total: -14.91 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -5.79 Total: -116.30 kcal Atomic # 14 Polarization: 52.27 SS G_CDS: 2.06 Total: 54.32 kcal Total: -65.51 2.08 -63.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085025729.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.941 kcal (2) G-P(sol) polarization free energy of solvation -65.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds