Wall clock time and date at job start Mon Mar 30 2020 04:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47184 * 2 1 4 4 N 1.46893 * 109.47782 * 120.00385 * 2 1 3 5 5 C 1.46896 * 111.00258 * 166.05146 * 4 2 1 6 6 C 1.50700 * 109.47398 * 288.08845 * 5 4 2 7 7 H 1.08000 * 119.99949 * 2.88241 * 6 5 4 8 8 C 1.37879 * 119.99746 * 182.89136 * 6 5 4 9 9 N 1.31511 * 120.00123 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99669 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47069 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.46881 * 119.99802 * 10 8 6 13 13 H 1.48491 * 109.47045 * 239.99448 * 10 8 6 14 14 C 1.46901 * 111.00003 * 290.01112 * 4 2 1 15 15 C 1.50702 * 109.47125 * 164.09157 * 14 4 2 16 16 N 1.30823 * 125.96078 * 90.51442 * 15 14 4 17 17 C 1.33245 * 109.83166 * 180.02562 * 16 15 14 18 18 N 1.30712 * 108.94216 * 0.02562 * 17 16 15 19 19 N 1.34430 * 125.96126 * 270.20894 * 15 14 4 20 20 C 1.46498 * 126.82150 * 359.97438 * 19 15 14 21 21 C 1.52999 * 109.47212 * 125.10340 * 20 19 15 22 22 C 1.52999 * 109.47321 * 245.10221 * 20 19 15 23 23 H 1.09004 * 109.47087 * 306.33206 * 1 2 3 24 24 H 1.09001 * 109.47859 * 66.33312 * 1 2 3 25 25 H 1.09007 * 109.47164 * 186.33667 * 1 2 3 26 26 H 1.09003 * 109.46803 * 240.00507 * 2 1 3 27 27 H 1.08991 * 109.47364 * 181.66997 * 3 2 1 28 28 H 1.08998 * 109.46994 * 301.67616 * 3 2 1 29 29 H 1.09008 * 109.46549 * 61.67082 * 3 2 1 30 30 H 1.09000 * 109.47363 * 48.08973 * 5 4 2 31 31 H 1.09001 * 109.46804 * 168.08340 * 5 4 2 32 32 H 0.97000 * 119.99958 * 180.02562 * 9 8 6 33 33 H 1.08999 * 109.46931 * 44.09202 * 14 4 2 34 34 H 1.08993 * 109.46788 * 284.09181 * 14 4 2 35 35 H 1.07998 * 125.52787 * 180.02562 * 17 16 15 36 36 H 1.09002 * 109.47578 * 5.10531 * 20 19 15 37 37 H 1.08998 * 109.47280 * 55.52452 * 21 20 19 38 38 H 1.08997 * 109.47795 * 175.52854 * 21 20 19 39 39 H 1.08999 * 109.47271 * 295.53281 * 21 20 19 40 40 H 1.08998 * 109.47231 * 60.00001 * 22 20 19 41 41 H 1.09000 * 109.47197 * 180.02562 * 22 20 19 42 42 H 1.09001 * 109.46985 * 299.99852 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 3.4501 -1.0051 1.0795 6 6 3.6397 -2.1146 0.0775 7 1 2.7885 -2.5128 -0.4548 8 6 4.8998 -2.6215 -0.1595 9 7 5.9363 -2.1364 0.4885 10 14 5.1347 -3.9974 -1.4011 11 1 3.8210 -4.3633 -1.9889 12 1 6.0497 -3.5413 -2.4781 13 1 5.7201 -5.1815 -0.7228 14 6 1.7528 0.0970 2.4090 15 6 1.8999 -0.7814 3.6247 16 7 2.9987 -0.9669 4.3101 17 6 2.7658 -1.8050 5.3194 18 7 1.5100 -2.1665 5.2897 19 7 0.9236 -1.5065 4.1975 20 6 -0.4736 -1.5941 3.7657 21 6 -0.8483 -3.0611 3.5456 22 6 -1.3789 -0.9925 4.8424 23 1 -0.3633 0.6089 0.8279 24 1 -0.3635 0.4125 -0.9412 25 1 -0.3634 -1.0214 0.1134 26 1 1.8932 -0.5138 -0.8901 27 1 3.1295 1.4427 -0.0299 28 1 1.6523 1.9649 -0.8746 29 1 1.7012 1.9476 0.9047 30 1 3.9891 -0.1183 0.7460 31 1 3.8353 -1.3211 2.0490 32 1 6.8229 -2.4928 0.3214 33 1 0.7383 0.4933 2.3677 34 1 2.4629 0.9217 2.4685 35 1 3.4962 -2.1326 6.0444 36 1 -0.6013 -1.0429 2.8340 37 1 -0.6455 -3.6281 4.4542 38 1 -1.9082 -3.1328 3.3016 39 1 -0.2581 -3.4676 2.7244 40 1 -1.1120 0.0526 4.9992 41 1 -2.4185 -1.0581 4.5213 42 1 -1.2513 -1.5438 5.7740 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088593052.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:29 Heat of formation + Delta-G solvation = 66.185529 kcal Electronic energy + Delta-G solvation = -21555.389063 eV Core-core repulsion = 18571.566817 eV Total energy + Delta-G solvation = -2983.822247 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.02126 -39.33746 -36.96163 -34.87770 -33.47842 -31.85769 -31.67988 -29.31409 -28.18137 -27.95722 -26.64842 -24.45247 -23.88191 -22.17185 -21.18475 -20.15013 -18.41585 -18.11435 -16.95025 -16.80657 -16.20815 -15.70442 -15.66020 -15.39508 -15.15111 -14.58538 -14.27072 -14.07973 -13.99289 -13.57155 -13.50920 -13.21459 -13.12366 -12.93886 -12.78408 -12.68148 -12.53983 -12.39212 -12.34566 -12.03158 -11.91975 -11.70833 -11.46246 -11.21783 -10.85086 -10.63058 -10.52579 -10.38605 -9.02839 -8.15674 -6.24668 0.68443 1.37296 1.38589 1.46696 1.50974 2.03116 2.40332 3.14533 3.18723 3.47587 3.54360 3.84155 3.98033 4.00907 4.12665 4.17090 4.34011 4.43440 4.52272 4.60642 4.69116 4.74787 4.82235 4.84225 4.87137 4.90687 5.06134 5.11356 5.20907 5.25451 5.30748 5.33731 5.46458 5.50808 5.59040 5.59552 5.70758 5.98109 6.12661 6.41941 6.60188 6.91911 7.26166 7.43217 8.95008 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.016398 B = 0.006908 C = 0.006053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.120502 B = 4052.071765 C = 4624.609540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.075 3.925 3 C -0.176 4.176 4 N -0.527 5.527 5 C 0.205 3.795 6 C -0.515 4.515 7 H 0.059 0.941 8 C 0.000 4.000 9 N -0.932 5.932 10 Si 0.962 3.038 11 H -0.262 1.262 12 H -0.277 1.277 13 H -0.285 1.285 14 C 0.130 3.870 15 C 0.288 3.712 16 N -0.576 5.576 17 C 0.181 3.819 18 N -0.337 5.337 19 N -0.358 5.358 20 C 0.141 3.859 21 C -0.151 4.151 22 C -0.150 4.150 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.026 0.974 28 H 0.079 0.921 29 H 0.067 0.933 30 H -0.033 1.033 31 H 0.016 0.984 32 H 0.261 0.739 33 H 0.123 0.877 34 H 0.055 0.945 35 H 0.235 0.765 36 H 0.120 0.880 37 H 0.054 0.946 38 H 0.109 0.891 39 H 0.040 0.960 40 H 0.059 0.941 41 H 0.109 0.891 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.132 4.960 4.214 18.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.033 4.033 3 C -0.235 4.235 4 N -0.252 5.252 5 C 0.078 3.922 6 C -0.554 4.554 7 H 0.078 0.922 8 C -0.198 4.198 9 N -0.573 5.573 10 Si 0.787 3.213 11 H -0.186 1.186 12 H -0.202 1.202 13 H -0.211 1.211 14 C 0.000 4.000 15 C 0.011 3.989 16 N -0.305 5.305 17 C -0.121 4.121 18 N -0.166 5.166 19 N -0.150 5.150 20 C 0.040 3.960 21 C -0.209 4.209 22 C -0.208 4.208 23 H 0.087 0.913 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.045 0.955 28 H 0.098 0.902 29 H 0.086 0.914 30 H -0.016 1.016 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.141 0.859 34 H 0.073 0.927 35 H 0.251 0.749 36 H 0.138 0.862 37 H 0.073 0.927 38 H 0.127 0.873 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.127 0.873 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.339 4.143 4.692 18.434 hybrid contribution 1.658 -0.106 -0.597 1.765 sum -15.681 4.037 4.094 16.702 Atomic orbital electron populations 1.21814 0.92070 1.02270 1.02784 1.21738 0.96824 0.92275 0.92486 1.22393 1.00210 0.97711 1.03137 1.62244 1.19208 1.42768 1.00967 1.19445 0.82896 0.93571 0.96243 1.21476 0.92908 1.18737 1.22241 0.92239 1.25860 0.95810 0.99623 0.98470 1.70127 0.99507 1.44095 1.43577 0.85451 0.78412 0.78745 0.78714 1.18597 1.20245 1.21086 1.20595 1.03267 0.91485 0.84662 1.24425 0.84127 0.94359 0.95959 1.70484 1.27491 1.23036 1.09485 1.26366 0.93575 0.94724 0.97421 1.77748 1.10433 1.20563 1.07831 1.50693 1.10779 1.32751 1.20740 1.21829 0.74659 0.99849 0.99685 1.22028 1.03548 0.93562 1.01725 1.22113 1.00271 1.00611 0.97792 0.91261 0.90577 0.92464 0.91794 0.95498 0.90247 0.91364 1.01580 0.96603 0.93036 0.85902 0.92743 0.74903 0.86216 0.92698 0.87287 0.94074 0.92213 0.87257 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 9.10 71.98 0.66 -2.38 16 2 C 0.07 2.52 2.79 44.92 0.13 2.64 16 3 C -0.18 -5.30 8.47 71.98 0.61 -4.69 16 4 N -0.53 -21.34 4.32 -880.10 -3.80 -25.14 16 5 C 0.20 11.00 4.48 85.56 0.38 11.39 16 6 C -0.51 -29.70 8.45 25.60 0.22 -29.48 16 7 H 0.06 3.35 7.52 -2.91 -0.02 3.33 16 8 C 0.00 0.00 5.46 84.66 0.46 0.47 16 9 N -0.93 -58.43 13.29 21.45 0.28 -58.15 16 10 Si 0.96 45.74 29.54 68.60 2.03 47.77 16 11 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 14 C 0.13 4.48 3.69 85.56 0.32 4.79 16 15 C 0.29 11.05 6.83 138.23 0.94 12.00 16 16 N -0.58 -24.90 10.27 -191.78 -1.97 -26.87 16 17 C 0.18 6.78 13.03 180.76 2.36 9.14 16 18 N -0.34 -12.11 12.53 -61.24 -0.77 -12.87 16 19 N -0.36 -11.91 3.29 -318.05 -1.05 -12.95 16 20 C 0.14 3.30 3.67 44.99 0.16 3.46 16 21 C -0.15 -3.46 9.40 71.98 0.68 -2.78 16 22 C -0.15 -2.59 9.52 71.98 0.69 -1.90 16 23 H 0.07 1.25 6.69 -2.39 -0.02 1.24 16 24 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 26 H 0.06 2.55 7.01 -2.39 -0.02 2.53 16 27 H 0.03 0.99 6.73 -2.39 -0.02 0.97 16 28 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.07 1.77 6.54 -2.38 -0.02 1.75 16 30 H -0.03 -1.95 6.51 -2.39 -0.02 -1.97 16 31 H 0.02 0.96 6.47 -2.39 -0.02 0.95 16 32 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 33 H 0.12 3.08 5.33 -2.39 -0.01 3.07 16 34 H 0.05 2.00 7.12 -2.39 -0.02 1.98 16 35 H 0.23 6.89 8.06 -2.91 -0.02 6.86 16 36 H 0.12 2.46 6.82 -2.39 -0.02 2.44 16 37 H 0.05 1.39 8.10 -2.39 -0.02 1.38 16 38 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -74.89 335.79 3.31 -71.59 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.99 Total: 13.99 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 7.59 Total: 2.64 kcal Atomic # 7 Polarization: -128.69 SS G_CDS: -7.30 Total: -135.99 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -74.89 3.31 -71.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088593052.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.771 kcal (2) G-P(sol) polarization free energy of solvation -74.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds