Wall clock time and date at job start Mon Mar 30 2020 04:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46982 * 2 1 4 4 C 1.53000 * 109.46726 * 119.99128 * 2 1 3 5 5 N 1.46502 * 109.47049 * 175.96646 * 4 2 1 6 6 N 1.40440 * 126.81842 * 83.61830 * 5 4 2 7 7 C 1.30718 * 106.79117 * 180.02562 * 6 5 4 8 8 N 1.33234 * 108.94545 * 0.24640 * 7 6 5 9 9 C 1.30832 * 109.83176 * 359.58755 * 8 7 6 10 10 C 1.50702 * 125.96391 * 180.13065 * 9 8 7 11 11 N 1.46500 * 109.46692 * 277.48433 * 10 9 8 12 12 C 1.36949 * 119.99844 * 263.31307 * 11 10 9 13 13 H 1.07993 * 119.99724 * 137.92493 * 12 11 10 14 14 C 1.38817 * 119.99739 * 317.92826 * 12 11 10 15 15 N 1.31616 * 119.99876 * 353.47016 * 14 12 11 16 16 Si 1.86796 * 119.99859 * 173.47429 * 14 12 11 17 17 H 1.48508 * 109.47110 * 59.99859 * 16 14 12 18 18 H 1.48499 * 109.47130 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47074 * 299.99986 * 16 14 12 20 20 C 1.46498 * 120.00672 * 83.31363 * 11 10 9 21 21 C 1.52993 * 109.47369 * 124.11332 * 20 11 10 22 22 C 1.53001 * 109.47010 * 244.11607 * 20 11 10 23 23 H 1.08993 * 109.47878 * 300.00339 * 1 2 3 24 24 H 1.09002 * 109.47015 * 60.01033 * 1 2 3 25 25 H 1.09009 * 109.47020 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47378 * 239.99488 * 2 1 3 27 27 H 1.09004 * 109.46706 * 299.99782 * 3 2 1 28 28 H 1.09002 * 109.47277 * 59.98957 * 3 2 1 29 29 H 1.09001 * 109.47382 * 179.97438 * 3 2 1 30 30 H 1.09010 * 109.46797 * 55.97246 * 4 2 1 31 31 H 1.08997 * 109.47818 * 295.97392 * 4 2 1 32 32 H 1.07999 * 125.52529 * 179.97438 * 7 6 5 33 33 H 1.08995 * 109.47564 * 37.48044 * 10 9 8 34 34 H 1.09003 * 109.47030 * 157.48943 * 10 9 8 35 35 H 0.97005 * 119.99532 * 179.97438 * 15 14 12 36 36 H 1.09006 * 109.46461 * 4.10843 * 20 11 10 37 37 H 1.09000 * 109.47285 * 65.34841 * 21 20 11 38 38 H 1.08998 * 109.47131 * 185.35189 * 21 20 11 39 39 H 1.09002 * 109.47035 * 305.34684 * 21 20 11 40 40 H 1.08997 * 109.47309 * 64.04848 * 22 20 11 41 41 H 1.09002 * 109.46739 * 184.04258 * 22 20 11 42 42 H 1.08992 * 109.47266 * 304.04495 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.5017 -0.8058 1.2019 6 7 4.4155 0.1838 1.5994 7 6 5.6115 -0.3005 1.3899 8 7 5.4986 -1.5271 0.8821 9 6 4.2348 -1.8460 0.7686 10 6 3.6951 -3.1493 0.2383 11 7 3.6700 -3.1077 -1.2259 12 6 2.5143 -2.7767 -1.8818 13 1 2.5482 -2.1158 -2.7352 14 6 1.2994 -3.2905 -1.4494 15 7 1.2700 -4.1942 -0.4930 16 14 -0.2938 -2.6993 -2.2251 17 1 -0.2760 -2.9963 -3.6801 18 1 -1.4415 -3.3973 -1.5920 19 1 -0.4304 -1.2348 -2.0205 20 6 4.8811 -3.4203 -1.9885 21 6 4.5861 -4.5547 -2.9718 22 6 5.3314 -2.1792 -2.7618 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.6766 1.9562 -0.8901 28 1 1.6765 1.9564 0.8899 29 1 3.1300 1.4426 0.0005 30 1 1.6187 -1.7258 1.2863 31 1 1.7367 -0.1672 2.1378 32 1 6.5403 0.2124 1.5913 33 1 4.3345 -3.9683 0.5676 34 1 2.6839 -3.3038 0.6148 35 1 0.4210 -4.5530 -0.1907 36 1 5.6717 -3.7287 -1.3044 37 1 3.8644 -4.2137 -3.7140 38 1 5.5083 -4.8516 -3.4712 39 1 4.1755 -5.4071 -2.4305 40 1 5.6103 -1.3944 -2.0588 41 1 6.1898 -2.4309 -3.3847 42 1 4.5149 -1.8284 -3.3929 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088593237.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:15 Heat of formation + Delta-G solvation = 93.270713 kcal Electronic energy + Delta-G solvation = -22371.942518 eV Core-core repulsion = 19389.294773 eV Total energy + Delta-G solvation = -2982.647745 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.23318 -36.60134 -36.07221 -32.57780 -31.90762 -31.29165 -29.24107 -26.81569 -26.46725 -26.14180 -25.64627 -23.33822 -21.24862 -20.24750 -19.65260 -19.10211 -16.55506 -16.19826 -15.10888 -15.03184 -14.91881 -14.10381 -13.82855 -13.62040 -13.40310 -13.06016 -12.73252 -12.63775 -12.18757 -12.04075 -11.80780 -11.48736 -11.37974 -11.25113 -11.16166 -10.84863 -10.75521 -10.54450 -10.41044 -10.27356 -10.18195 -10.06041 -10.01719 -9.60910 -9.16021 -8.86365 -8.66990 -8.60351 -6.67832 -5.97369 -3.62489 2.46723 3.13984 3.23356 3.30429 3.34747 3.76866 4.32867 5.01225 5.15643 5.22687 5.25924 5.40646 5.47515 5.58850 5.80651 5.88177 5.96146 6.02212 6.07727 6.12525 6.20070 6.28741 6.35596 6.39892 6.48897 6.49244 6.68693 6.70805 6.77272 6.80811 6.86335 6.89981 7.10521 7.22788 7.27688 7.31457 7.39513 7.67886 7.72703 8.40269 9.00228 9.03663 9.61000 10.23705 11.04423 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.013765 B = 0.012128 C = 0.007771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.627946 B = 2308.166985 C = 3602.050998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.115 4.115 3 C -0.140 4.140 4 C 0.143 3.857 5 N -0.367 5.367 6 N -0.348 5.348 7 C 0.179 3.821 8 N -0.562 5.562 9 C 0.288 3.712 10 C 0.208 3.792 11 N -0.563 5.563 12 C -0.248 4.248 13 H 0.059 0.941 14 C 0.023 3.977 15 N -0.894 5.894 16 Si 0.878 3.122 17 H -0.285 1.285 18 H -0.289 1.289 19 H -0.259 1.259 20 C 0.168 3.832 21 C -0.144 4.144 22 C -0.152 4.152 23 H 0.046 0.954 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.105 0.895 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.200 0.800 33 H 0.058 0.942 34 H 0.126 0.874 35 H 0.259 0.741 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.031 0.969 39 H 0.052 0.948 40 H 0.043 0.957 41 H 0.036 0.964 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.997 4.770 1.622 5.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.134 4.134 3 C -0.197 4.197 4 C 0.020 3.980 5 N -0.156 5.156 6 N -0.177 5.177 7 C -0.124 4.124 8 N -0.291 5.291 9 C 0.010 3.990 10 C 0.078 3.922 11 N -0.282 5.282 12 C -0.378 4.378 13 H 0.076 0.924 14 C -0.177 4.177 15 N -0.537 5.537 16 Si 0.707 3.293 17 H -0.212 1.212 18 H -0.215 1.215 19 H -0.184 1.184 20 C 0.061 3.939 21 C -0.202 4.202 22 C -0.211 4.211 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.123 0.877 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.094 0.906 32 H 0.217 0.783 33 H 0.076 0.924 34 H 0.143 0.857 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.884 5.167 1.896 5.575 hybrid contribution -0.974 0.379 -0.478 1.150 sum -0.090 5.546 1.417 5.725 Atomic orbital electron populations 1.21886 0.94869 1.01862 1.00978 1.21576 0.95669 0.96512 0.99674 1.21792 1.01825 0.95691 1.00419 1.21766 0.74332 1.03112 0.98763 1.50273 1.07070 1.11114 1.47132 1.77788 0.99653 1.14158 1.26106 1.25679 0.96304 0.91938 0.98507 1.70511 1.18461 1.15182 1.24955 1.26925 0.86410 0.94700 0.90948 1.19955 1.02573 0.84523 0.85197 1.43706 1.07238 1.78423 0.98847 1.18903 0.84227 1.22486 1.12180 0.92351 1.25310 0.98501 0.95652 0.98252 1.69712 1.25440 1.28760 1.29793 0.86898 0.83174 0.79853 0.79391 1.21154 1.21525 1.18406 1.20420 0.88818 0.92152 0.92472 1.22017 0.99107 0.99364 0.99741 1.22122 0.99313 0.99799 0.99827 0.93447 0.92436 0.92294 0.87684 0.93479 0.93499 0.92143 0.87846 0.90571 0.78319 0.92405 0.85707 0.93061 0.92765 0.92830 0.94990 0.92926 0.93768 0.94497 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 7.68 37.16 0.29 -1.92 16 2 C -0.12 -2.03 3.13 -90.62 -0.28 -2.32 16 3 C -0.14 -2.31 8.98 37.16 0.33 -1.98 16 4 C 0.14 2.56 5.77 -4.04 -0.02 2.54 16 5 N -0.37 -7.30 3.32 -58.34 -0.19 -7.49 16 6 N -0.35 -6.78 11.33 29.29 0.33 -6.45 16 7 C 0.18 3.33 13.03 -91.81 -1.20 2.13 16 8 N -0.56 -11.68 11.19 -11.97 -0.13 -11.81 16 9 C 0.29 6.10 7.55 -155.69 -1.18 4.92 16 10 C 0.21 4.58 5.52 -5.19 -0.03 4.55 16 11 N -0.56 -12.65 2.35 -167.02 -0.39 -13.04 16 12 C -0.25 -5.87 6.69 -15.05 -0.10 -5.98 16 13 H 0.06 1.45 6.91 -52.49 -0.36 1.09 16 14 C 0.02 0.54 5.21 -17.43 -0.09 0.45 16 15 N -0.89 -22.04 11.02 55.49 0.61 -21.43 16 16 Si 0.88 18.81 27.52 -169.99 -4.68 14.14 16 17 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.26 -5.13 4.88 56.52 0.28 -4.86 16 20 C 0.17 3.45 3.35 -67.93 -0.23 3.23 16 21 C -0.14 -2.80 9.00 37.15 0.33 -2.46 16 22 C -0.15 -2.95 9.28 37.16 0.34 -2.60 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.90 7.61 -51.93 -0.40 0.50 16 25 H 0.06 1.01 5.90 -51.92 -0.31 0.70 16 26 H 0.11 2.20 6.55 -51.93 -0.34 1.86 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.12 6.62 -51.93 -0.34 0.77 16 30 H 0.10 1.95 6.82 -51.92 -0.35 1.60 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.20 2.87 8.06 -52.49 -0.42 2.45 16 33 H 0.06 1.28 8.03 -51.93 -0.42 0.86 16 34 H 0.13 2.92 4.09 -51.93 -0.21 2.70 16 35 H 0.26 6.29 8.31 -40.82 -0.34 5.95 16 36 H 0.05 1.12 7.86 -51.93 -0.41 0.71 16 37 H 0.05 1.09 7.76 -51.93 -0.40 0.69 16 38 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.05 1.00 7.03 -51.93 -0.37 0.64 16 LS Contribution 327.69 15.07 4.94 4.94 Total: -1.00 -25.50 327.69 -8.32 -33.82 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -6.97 Total: 6.77 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -1.83 Total: 0.56 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: 0.22 Total: -60.23 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -4.68 Total: 14.14 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -25.50 -8.32 -33.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088593237.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.090 kcal (2) G-P(sol) polarization free energy of solvation -25.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds