Wall clock time and date at job start Mon Mar 30 2020 04:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46982 * 2 1 4 4 C 1.53000 * 109.46726 * 119.99128 * 2 1 3 5 5 N 1.46502 * 109.47049 * 175.96646 * 4 2 1 6 6 N 1.40440 * 126.81842 * 83.61830 * 5 4 2 7 7 C 1.30718 * 106.79117 * 180.02562 * 6 5 4 8 8 N 1.33234 * 108.94545 * 0.24640 * 7 6 5 9 9 C 1.30832 * 109.83176 * 359.58755 * 8 7 6 10 10 C 1.50702 * 125.96391 * 180.13065 * 9 8 7 11 11 N 1.46500 * 109.46692 * 277.48433 * 10 9 8 12 12 C 1.36949 * 119.99844 * 263.31307 * 11 10 9 13 13 H 1.07993 * 119.99724 * 137.92493 * 12 11 10 14 14 C 1.38817 * 119.99739 * 317.92826 * 12 11 10 15 15 N 1.31616 * 119.99876 * 353.47016 * 14 12 11 16 16 Si 1.86796 * 119.99859 * 173.47429 * 14 12 11 17 17 H 1.48508 * 109.47110 * 59.99859 * 16 14 12 18 18 H 1.48499 * 109.47130 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47074 * 299.99986 * 16 14 12 20 20 C 1.46498 * 120.00672 * 83.31363 * 11 10 9 21 21 C 1.52993 * 109.47369 * 124.11332 * 20 11 10 22 22 C 1.53001 * 109.47010 * 244.11607 * 20 11 10 23 23 H 1.08993 * 109.47878 * 300.00339 * 1 2 3 24 24 H 1.09002 * 109.47015 * 60.01033 * 1 2 3 25 25 H 1.09009 * 109.47020 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47378 * 239.99488 * 2 1 3 27 27 H 1.09004 * 109.46706 * 299.99782 * 3 2 1 28 28 H 1.09002 * 109.47277 * 59.98957 * 3 2 1 29 29 H 1.09001 * 109.47382 * 179.97438 * 3 2 1 30 30 H 1.09010 * 109.46797 * 55.97246 * 4 2 1 31 31 H 1.08997 * 109.47818 * 295.97392 * 4 2 1 32 32 H 1.07999 * 125.52529 * 179.97438 * 7 6 5 33 33 H 1.08995 * 109.47564 * 37.48044 * 10 9 8 34 34 H 1.09003 * 109.47030 * 157.48943 * 10 9 8 35 35 H 0.97005 * 119.99532 * 179.97438 * 15 14 12 36 36 H 1.09006 * 109.46461 * 4.10843 * 20 11 10 37 37 H 1.09000 * 109.47285 * 65.34841 * 21 20 11 38 38 H 1.08998 * 109.47131 * 185.35189 * 21 20 11 39 39 H 1.09002 * 109.47035 * 305.34684 * 21 20 11 40 40 H 1.08997 * 109.47309 * 64.04848 * 22 20 11 41 41 H 1.09002 * 109.46739 * 184.04258 * 22 20 11 42 42 H 1.08992 * 109.47266 * 304.04495 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.5017 -0.8058 1.2019 6 7 4.4155 0.1838 1.5994 7 6 5.6115 -0.3005 1.3899 8 7 5.4986 -1.5271 0.8821 9 6 4.2348 -1.8460 0.7686 10 6 3.6951 -3.1493 0.2383 11 7 3.6700 -3.1077 -1.2259 12 6 2.5143 -2.7767 -1.8818 13 1 2.5482 -2.1158 -2.7352 14 6 1.2994 -3.2905 -1.4494 15 7 1.2700 -4.1942 -0.4930 16 14 -0.2938 -2.6993 -2.2251 17 1 -0.2760 -2.9963 -3.6801 18 1 -1.4415 -3.3973 -1.5920 19 1 -0.4304 -1.2348 -2.0205 20 6 4.8811 -3.4203 -1.9885 21 6 4.5861 -4.5547 -2.9718 22 6 5.3314 -2.1792 -2.7618 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.6766 1.9562 -0.8901 28 1 1.6765 1.9564 0.8899 29 1 3.1300 1.4426 0.0005 30 1 1.6187 -1.7258 1.2863 31 1 1.7367 -0.1672 2.1378 32 1 6.5403 0.2124 1.5913 33 1 4.3345 -3.9683 0.5676 34 1 2.6839 -3.3038 0.6148 35 1 0.4210 -4.5530 -0.1907 36 1 5.6717 -3.7287 -1.3044 37 1 3.8644 -4.2137 -3.7140 38 1 5.5083 -4.8516 -3.4712 39 1 4.1755 -5.4071 -2.4305 40 1 5.6103 -1.3944 -2.0588 41 1 6.1898 -2.4309 -3.3847 42 1 4.5149 -1.8284 -3.3929 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088593237.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:15 Heat of formation + Delta-G solvation = 82.390490 kcal Electronic energy + Delta-G solvation = -22372.414320 eV Core-core repulsion = 19389.294773 eV Total energy + Delta-G solvation = -2983.119547 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.78795 -38.29746 -37.50888 -34.31550 -33.44846 -32.92916 -30.92184 -28.15549 -28.08180 -27.74415 -27.22275 -25.08116 -22.73728 -21.75030 -21.34206 -20.64838 -18.29317 -17.80060 -16.78691 -16.56309 -16.45888 -15.76715 -15.48549 -15.15293 -14.95120 -14.54941 -14.32932 -14.13430 -13.71589 -13.46391 -13.34400 -13.01948 -12.98385 -12.95362 -12.66586 -12.42489 -12.33066 -12.18689 -12.02979 -11.83082 -11.74933 -11.70936 -11.57309 -11.29576 -10.73854 -10.47865 -10.37484 -10.19880 -8.48253 -7.80646 -5.48668 0.89659 1.49966 1.55905 1.58988 1.64566 2.21312 2.55344 3.30869 3.63461 3.71479 3.73220 3.87796 4.06528 4.18079 4.30712 4.37112 4.45242 4.59898 4.64336 4.73308 4.75248 4.78296 4.92001 4.94850 4.97011 5.04919 5.15860 5.18294 5.18924 5.21799 5.36855 5.43486 5.51055 5.58260 5.65560 5.69802 5.80214 5.81704 6.13813 6.55867 7.20983 7.43891 7.81738 8.41948 9.19033 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.013765 B = 0.012128 C = 0.007771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.627946 B = 2308.166985 C = 3602.050998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 C -0.130 4.130 4 C 0.142 3.858 5 N -0.368 5.368 6 N -0.352 5.352 7 C 0.178 3.822 8 N -0.576 5.576 9 C 0.276 3.724 10 C 0.216 3.784 11 N -0.572 5.572 12 C -0.245 4.245 13 H 0.045 0.955 14 C -0.002 4.002 15 N -0.914 5.914 16 Si 0.917 3.083 17 H -0.299 1.299 18 H -0.296 1.296 19 H -0.235 1.235 20 C 0.162 3.838 21 C -0.132 4.132 22 C -0.136 4.136 23 H 0.075 0.925 24 H 0.061 0.939 25 H 0.043 0.957 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.037 0.963 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.239 0.761 33 H 0.050 0.950 34 H 0.112 0.888 35 H 0.255 0.745 36 H 0.053 0.947 37 H 0.039 0.961 38 H 0.063 0.937 39 H 0.033 0.967 40 H 0.027 0.973 41 H 0.063 0.937 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.180 6.164 1.758 6.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.129 4.129 3 C -0.188 4.188 4 C 0.020 3.980 5 N -0.157 5.157 6 N -0.181 5.181 7 C -0.124 4.124 8 N -0.306 5.306 9 C -0.003 4.003 10 C 0.086 3.914 11 N -0.292 5.292 12 C -0.375 4.375 13 H 0.063 0.937 14 C -0.200 4.200 15 N -0.557 5.557 16 Si 0.745 3.255 17 H -0.226 1.226 18 H -0.222 1.222 19 H -0.159 1.159 20 C 0.056 3.944 21 C -0.191 4.191 22 C -0.195 4.195 23 H 0.094 0.906 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.255 0.745 33 H 0.068 0.932 34 H 0.129 0.871 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.052 0.948 40 H 0.046 0.954 41 H 0.082 0.918 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.073 6.582 2.034 6.972 hybrid contribution -0.959 -0.043 -0.502 1.083 sum 0.114 6.540 1.532 6.717 Atomic orbital electron populations 1.21847 0.93345 1.01403 1.02631 1.21460 0.96861 0.96770 0.97828 1.21693 1.00270 0.95012 1.01793 1.21863 0.73418 1.02776 0.99936 1.50383 1.07758 1.10850 1.46680 1.77771 0.99930 1.14036 1.26334 1.26454 0.97461 0.91217 0.97306 1.70488 1.18293 1.16366 1.25409 1.26588 0.86994 0.94796 0.91929 1.19678 1.01619 0.85004 0.85126 1.43823 1.07573 1.78707 0.99109 1.18799 0.84924 1.22032 1.11767 0.93735 1.25637 1.00118 0.95743 0.98471 1.69818 1.25511 1.29687 1.30702 0.86307 0.80645 0.80950 0.77580 1.22644 1.22246 1.15870 1.20551 0.88127 0.93057 0.92650 1.21891 1.00130 0.98092 0.98957 1.21954 0.99768 0.98529 0.99275 0.90639 0.91957 0.93746 0.91177 0.92474 0.91716 0.94355 0.89251 0.88391 0.74509 0.93206 0.87058 0.93473 0.92893 0.94163 0.91838 0.94752 0.95397 0.91764 0.94483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.00 7.68 71.98 0.55 -3.45 16 2 C -0.11 -3.74 3.13 -10.79 -0.03 -3.77 16 3 C -0.13 -4.03 8.98 71.98 0.65 -3.39 16 4 C 0.14 4.96 5.77 86.38 0.50 5.46 16 5 N -0.37 -14.38 3.32 -338.48 -1.12 -15.50 16 6 N -0.35 -13.15 11.33 -61.25 -0.69 -13.85 16 7 C 0.18 6.31 13.03 180.77 2.36 8.66 16 8 N -0.58 -23.46 11.19 -191.78 -2.15 -25.61 16 9 C 0.28 11.63 7.55 138.23 1.04 12.68 16 10 C 0.22 9.68 5.52 85.63 0.47 10.15 16 11 N -0.57 -26.03 2.35 -682.34 -1.60 -27.63 16 12 C -0.24 -11.77 6.69 84.03 0.56 -11.20 16 13 H 0.05 2.26 6.91 -2.91 -0.02 2.24 16 14 C 0.00 -0.08 5.21 84.86 0.44 0.37 16 15 N -0.91 -45.78 11.02 21.65 0.24 -45.54 16 16 Si 0.92 38.63 27.52 68.60 1.89 40.52 16 17 H -0.30 -13.25 7.11 99.48 0.71 -12.54 16 18 H -0.30 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.23 -8.88 4.88 99.48 0.49 -8.39 16 20 C 0.16 6.62 3.35 44.99 0.15 6.77 16 21 C -0.13 -5.06 9.00 71.98 0.65 -4.41 16 22 C -0.14 -5.18 9.28 71.98 0.67 -4.51 16 23 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.06 1.78 7.61 -2.39 -0.02 1.77 16 25 H 0.04 1.44 5.90 -2.38 -0.01 1.43 16 26 H 0.07 2.92 6.55 -2.39 -0.02 2.90 16 27 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.04 1.35 6.62 -2.39 -0.02 1.33 16 30 H 0.09 3.39 6.82 -2.38 -0.02 3.37 16 31 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 32 H 0.24 6.13 8.06 -2.91 -0.02 6.11 16 33 H 0.05 2.25 8.03 -2.39 -0.02 2.24 16 34 H 0.11 5.34 4.09 -2.39 -0.01 5.33 16 35 H 0.26 12.60 8.31 -92.70 -0.77 11.83 16 36 H 0.05 2.17 7.86 -2.38 -0.02 2.15 16 37 H 0.04 1.62 7.76 -2.39 -0.02 1.60 16 38 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 42 H 0.04 1.47 7.03 -2.39 -0.02 1.46 16 Total: -1.00 -54.23 327.69 5.33 -48.90 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.77 Total: 25.36 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 8.01 Total: 13.35 kcal Atomic # 7 Polarization: -122.80 SS G_CDS: -5.33 Total: -128.13 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 1.89 Total: 40.52 kcal Total: -54.23 5.33 -48.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088593237.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.287 kcal (2) G-P(sol) polarization free energy of solvation -54.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds