Wall clock time and date at job start Mon Mar 30 2020 04:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46998 * 2 1 4 4 C 1.50693 * 109.47327 * 120.00094 * 2 1 3 5 5 N 1.30974 * 125.77605 * 299.97356 * 4 2 1 6 6 N 1.40062 * 108.47652 * 179.97438 * 5 4 2 7 7 C 1.46494 * 126.08484 * 179.97438 * 6 5 4 8 8 C 1.36091 * 107.83816 * 0.02562 * 6 5 4 9 9 N 1.39707 * 126.28513 * 179.97438 * 8 6 5 10 10 C 1.46897 * 110.99951 * 241.44759 * 9 8 6 11 11 C 1.46895 * 110.99916 * 117.49170 * 9 8 6 12 12 H 1.09008 * 109.47163 * 60.00042 * 11 9 8 13 13 C 1.52998 * 109.47319 * 299.99960 * 11 9 8 14 14 C 1.50699 * 109.47368 * 179.97438 * 11 9 8 15 15 H 1.07997 * 119.99778 * 359.97438 * 14 11 9 16 16 C 1.37875 * 120.00193 * 180.02562 * 14 11 9 17 17 N 1.31512 * 120.00349 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 119.99965 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47324 * 59.99694 * 18 16 14 20 20 H 1.48503 * 109.47041 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47210 * 299.99535 * 18 16 14 22 22 C 1.36403 * 107.42829 * 0.25745 * 8 6 5 23 23 N 1.41387 * 126.09438 * 179.71847 * 22 8 6 24 24 H 1.09007 * 109.47095 * 299.99957 * 1 2 3 25 25 H 1.08994 * 109.47284 * 59.99582 * 1 2 3 26 26 H 1.09001 * 109.47133 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46894 * 240.00348 * 2 1 3 28 28 H 1.09000 * 109.47272 * 299.99909 * 3 2 1 29 29 H 1.08995 * 109.47014 * 60.00421 * 3 2 1 30 30 H 1.09001 * 109.46802 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47665 * 274.93414 * 7 6 5 32 32 H 1.09000 * 109.46981 * 34.93496 * 7 6 5 33 33 H 1.09001 * 109.47275 * 154.93133 * 7 6 5 34 34 H 1.09001 * 109.47033 * 290.19294 * 10 9 8 35 35 H 1.08996 * 109.47328 * 50.18887 * 10 9 8 36 36 H 1.08997 * 109.47331 * 170.19624 * 10 9 8 37 37 H 1.09005 * 109.47507 * 179.97438 * 13 11 9 38 38 H 1.08998 * 109.47383 * 299.99753 * 13 11 9 39 39 H 1.09001 * 109.47233 * 60.00136 * 13 11 9 40 40 H 0.97000 * 120.00409 * 179.97438 * 17 16 14 41 41 H 0.96994 * 120.00203 * 0.02562 * 23 22 8 42 42 H 0.97012 * 119.99902 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7871 -0.3627 2.4691 6 7 2.4286 -1.2712 3.3204 7 6 2.4093 -1.2426 4.7850 8 6 3.0740 -2.1847 2.5452 9 7 3.8365 -3.2635 2.9997 10 6 5.2306 -3.1489 2.5510 11 6 3.2491 -4.5403 2.5726 12 1 3.2083 -4.5753 1.4838 13 6 1.8340 -4.6660 3.1403 14 6 4.0973 -5.6781 3.0797 15 1 4.9842 -5.4731 3.6608 16 6 3.7415 -6.9807 2.8009 17 7 2.6618 -7.2303 2.0928 18 14 4.7925 -8.3910 3.4301 19 1 4.8477 -8.3438 4.9133 20 1 4.1987 -9.6818 2.9981 21 1 6.1662 -8.2686 2.8795 22 6 2.8450 -1.8498 1.2429 23 7 3.3379 -2.5339 0.1079 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 3.1902 -0.5730 5.1457 32 1 1.4381 -0.8865 5.1286 33 1 2.5852 -2.2469 5.1704 34 1 5.2797 -3.3078 1.4737 35 1 5.6084 -2.1547 2.7891 36 1 5.8380 -3.8993 3.0570 37 1 1.3979 -5.6133 2.8230 38 1 1.8748 -4.6311 4.2290 39 1 1.2207 -3.8431 2.7731 40 1 2.4117 -8.1467 1.8963 41 1 3.8947 -3.3203 0.2195 42 1 3.1186 -2.2172 -0.7825 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091549237.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:33 Heat of formation + Delta-G solvation = 64.083273 kcal Electronic energy + Delta-G solvation = -21626.998141 eV Core-core repulsion = 18643.084734 eV Total energy + Delta-G solvation = -2983.913407 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.22978 -38.52988 -36.62152 -35.07443 -34.30706 -32.41675 -31.19891 -29.33775 -27.95391 -27.15103 -26.83959 -25.69839 -23.36120 -22.77359 -20.62937 -19.92849 -18.35816 -17.91054 -17.20105 -16.72921 -16.20098 -16.15146 -15.41771 -15.27539 -15.15928 -14.74829 -14.62858 -14.28065 -13.94139 -13.70554 -13.34893 -13.26354 -12.98358 -12.89536 -12.79730 -12.65071 -12.38203 -12.15961 -12.09518 -12.05788 -11.91564 -11.88852 -11.46404 -11.37960 -10.96954 -10.52313 -9.79550 -9.17960 -8.11006 -7.89011 -6.22629 0.98781 1.45853 1.47212 1.54220 1.64626 2.02868 2.44135 3.15158 3.25054 3.29662 3.82118 3.92039 4.21277 4.33047 4.42405 4.51414 4.56994 4.58108 4.65835 4.73505 4.81111 4.85914 4.90983 4.98559 5.00651 5.01688 5.05109 5.14836 5.18271 5.38372 5.41679 5.48243 5.64801 5.69758 5.76118 6.08480 6.20898 6.27793 6.68356 6.81284 6.89722 7.06433 7.25611 7.46624 8.95374 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.027739 B = 0.005613 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.162151 B = 4987.241211 C = 5228.877702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.008 4.008 3 C -0.131 4.131 4 C 0.040 3.960 5 N -0.293 5.293 6 N -0.367 5.367 7 C 0.113 3.887 8 C 0.182 3.818 9 N -0.488 5.488 10 C 0.058 3.942 11 C 0.234 3.766 12 H -0.009 1.009 13 C -0.110 4.110 14 C -0.521 4.521 15 H 0.065 0.935 16 C 0.017 3.983 17 N -0.918 5.918 18 Si 0.960 3.040 19 H -0.274 1.274 20 H -0.288 1.288 21 H -0.269 1.269 22 C 0.019 3.981 23 N -0.871 5.871 24 H 0.051 0.949 25 H 0.084 0.916 26 H 0.038 0.962 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.024 0.976 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.027 0.973 39 H 0.003 0.997 40 H 0.261 0.739 41 H 0.391 0.609 42 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.066 13.013 -2.860 13.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.029 4.029 3 C -0.189 4.189 4 C -0.128 4.128 5 N -0.118 5.118 6 N -0.155 5.155 7 C -0.028 4.028 8 C -0.041 4.041 9 N -0.212 5.212 10 C -0.090 4.090 11 C 0.128 3.872 12 H 0.009 0.991 13 C -0.169 4.169 14 C -0.559 4.559 15 H 0.083 0.917 16 C -0.183 4.183 17 N -0.557 5.557 18 Si 0.786 3.214 19 H -0.199 1.199 20 H -0.214 1.214 21 H -0.194 1.194 22 C -0.092 4.092 23 N -0.422 5.422 24 H 0.070 0.930 25 H 0.103 0.897 26 H 0.057 0.943 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.042 0.958 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.046 0.954 39 H 0.022 0.978 40 H 0.070 0.930 41 H 0.220 0.780 42 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -0.777 13.733 -1.406 13.827 hybrid contribution 0.845 -1.971 -1.054 2.389 sum 0.068 11.763 -2.459 12.017 Atomic orbital electron populations 1.21751 0.93550 1.01265 1.02727 1.19598 0.96270 0.95951 0.91072 1.21726 1.00551 0.93972 1.02660 1.22128 1.00089 0.96057 0.94528 1.77021 1.20087 1.14746 0.99970 1.48208 1.39731 1.20905 1.06675 1.21801 1.03861 1.03979 0.73112 1.18695 1.02936 0.94422 0.88034 1.58769 1.01813 0.99975 1.60621 1.22113 0.87815 1.00959 0.98098 1.19051 0.91690 0.83719 0.92733 0.99106 1.21534 0.97728 0.99295 0.98326 1.21355 1.10058 0.90635 1.33864 0.91732 1.25654 0.96271 1.01085 0.95244 1.70021 1.25551 1.20426 1.39752 0.85581 0.79031 0.78096 0.78714 1.19896 1.21390 1.19379 1.18053 1.04927 0.98022 0.88162 1.41799 1.62063 1.34344 1.03956 0.93018 0.89681 0.94279 0.89288 0.89858 0.93062 0.93408 0.89969 0.89053 0.89881 0.95794 0.92313 0.90720 0.91918 0.95398 0.97795 0.92958 0.77978 0.77147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.18 71.98 0.66 -2.51 16 2 C -0.01 -0.22 3.34 -11.54 -0.04 -0.25 16 3 C -0.13 -2.80 9.18 71.98 0.66 -2.14 16 4 C 0.04 1.35 5.72 43.10 0.25 1.60 16 5 N -0.29 -10.65 12.56 -47.27 -0.59 -11.25 16 6 N -0.37 -13.74 4.05 -365.32 -1.48 -15.22 16 7 C 0.11 3.39 11.44 127.77 1.46 4.85 16 8 C 0.18 7.40 4.23 131.04 0.55 7.96 16 9 N -0.49 -20.93 4.54 -705.42 -3.20 -24.14 16 10 C 0.06 2.22 8.81 127.69 1.13 3.34 16 11 C 0.23 11.61 1.85 44.17 0.08 11.69 16 12 H -0.01 -0.46 6.03 -2.38 -0.01 -0.47 16 13 C -0.11 -5.64 8.85 71.98 0.64 -5.01 16 14 C -0.52 -27.34 7.99 25.60 0.20 -27.13 16 15 H 0.06 3.32 6.41 -2.91 -0.02 3.30 16 16 C 0.02 0.89 5.30 84.65 0.45 1.34 16 17 N -0.92 -51.57 11.32 21.45 0.24 -51.32 16 18 Si 0.96 42.22 29.54 68.60 2.03 44.24 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 22 C 0.02 0.73 6.76 37.59 0.25 0.99 16 23 N -0.87 -29.79 8.64 -51.12 -0.44 -30.23 16 24 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 25 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.09 2.03 7.03 -2.39 -0.02 2.02 16 28 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.05 1.06 8.14 -2.39 -0.02 1.05 16 31 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.08 2.66 8.02 -2.39 -0.02 2.64 16 34 H 0.02 0.90 6.08 -2.39 -0.01 0.89 16 35 H 0.06 2.03 8.06 -2.39 -0.02 2.01 16 36 H 0.07 2.90 6.46 -2.39 -0.02 2.88 16 37 H 0.06 3.49 6.07 -2.38 -0.01 3.48 16 38 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.00 0.16 7.22 -2.39 -0.02 0.14 16 40 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 41 H 0.39 14.57 5.41 -92.71 -0.50 14.07 16 42 H 0.40 11.14 7.86 -92.70 -0.73 10.42 16 Total: -1.00 -61.85 330.85 2.64 -59.20 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: -0.21 Total: 33.98 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 6.30 Total: -5.28 kcal Atomic # 7 Polarization: -126.68 SS G_CDS: -5.47 Total: -132.15 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Total: -61.85 2.64 -59.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091549237.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.288 kcal (2) G-P(sol) polarization free energy of solvation -61.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds