Wall clock time and date at job start Mon Mar 30 2020 04:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.46729 * 2 1 4 4 C 1.46896 * 110.99892 * 168.92188 * 3 2 1 5 5 C 1.50703 * 109.47333 * 287.41005 * 4 3 2 6 6 H 1.07995 * 119.99848 * 4.86344 * 5 4 3 7 7 C 1.37874 * 120.00356 * 184.85455 * 5 4 3 8 8 N 1.31523 * 119.99856 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00362 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46796 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47091 * 120.00038 * 9 7 5 12 12 H 1.48496 * 109.47359 * 240.00356 * 9 7 5 13 13 C 1.39711 * 111.00121 * 292.87796 * 3 2 1 14 14 C 1.36402 * 126.28638 * 113.30648 * 13 3 2 15 15 N 1.41384 * 126.09678 * 359.97438 * 14 13 3 16 16 C 1.39958 * 107.80220 * 179.73723 * 14 13 3 17 17 C 1.50706 * 125.76766 * 180.28300 * 16 14 13 18 18 C 1.52996 * 109.46925 * 120.00191 * 17 16 14 19 19 C 1.53005 * 109.46645 * 239.99447 * 17 16 14 20 20 N 1.30969 * 108.45558 * 0.25781 * 16 14 13 21 21 N 1.36088 * 126.28357 * 293.48969 * 13 3 2 22 22 C 1.46509 * 126.07878 * 0.03756 * 21 13 3 23 23 H 1.09002 * 109.47279 * 305.19540 * 1 2 3 24 24 H 1.08997 * 109.47585 * 65.20277 * 1 2 3 25 25 H 1.09004 * 109.46539 * 185.19986 * 1 2 3 26 26 H 1.09003 * 109.47234 * 240.00334 * 2 1 3 27 27 H 1.08998 * 109.47090 * 119.99808 * 2 1 3 28 28 H 1.09002 * 109.47179 * 47.41365 * 4 3 2 29 29 H 1.09000 * 109.47568 * 167.41413 * 4 3 2 30 30 H 0.96993 * 119.99825 * 179.97438 * 8 7 5 31 31 H 0.97004 * 120.00142 * 179.72162 * 15 14 13 32 32 H 0.96998 * 120.00231 * 359.43975 * 15 14 13 33 33 H 1.08996 * 109.47384 * 359.97438 * 17 16 14 34 34 H 1.08998 * 109.47781 * 59.99314 * 18 17 16 35 35 H 1.09006 * 109.47378 * 180.02562 * 18 17 16 36 36 H 1.09005 * 109.46821 * 299.98955 * 18 17 16 37 37 H 1.08997 * 109.46786 * 60.00566 * 19 17 16 38 38 H 1.09008 * 109.46661 * 179.97438 * 19 17 16 39 39 H 1.08996 * 109.47549 * 300.00291 * 19 17 16 40 40 H 1.08997 * 109.46938 * 265.10559 * 22 21 13 41 41 H 1.08996 * 109.46965 * 25.10503 * 22 21 13 42 42 H 1.08996 * 109.46847 * 145.10642 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4639 1.4328 0.2635 5 6 3.7210 1.1120 1.7134 6 1 2.9032 0.8177 2.3545 7 6 5.0001 1.1939 2.2214 8 7 5.9960 1.5526 1.4407 9 14 5.3188 0.7955 4.0183 10 1 4.0414 0.4208 4.6763 11 1 6.2744 -0.3375 4.1122 12 1 5.8942 1.9857 4.6948 13 6 1.7084 2.0261 -1.2017 14 6 0.8439 3.0693 -1.3598 15 7 0.0997 3.6971 -0.3347 16 6 0.8291 3.4108 -2.7170 17 6 0.0145 4.5160 -3.3384 18 6 0.9503 5.5261 -4.0054 19 6 -0.9296 3.9255 -4.3877 20 7 1.6433 2.6078 -3.3555 21 7 2.2094 1.7222 -2.4299 22 6 3.1738 0.6608 -2.7298 23 1 -0.3634 0.5923 0.8398 24 1 -0.3634 0.4310 -0.9329 25 1 -0.3632 -1.0235 0.0931 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9725 0.7026 -0.3660 29 1 3.8413 2.4307 0.0399 30 1 6.8958 1.6106 1.7981 31 1 -0.4891 4.4383 -0.5470 32 1 0.1747 3.3842 0.5804 33 1 -0.5690 5.0161 -2.5654 34 1 1.5335 5.0258 -4.7784 35 1 0.3612 6.3258 -4.4544 36 1 1.6229 5.9468 -3.2578 37 1 -1.5963 3.2059 -3.9126 38 1 -1.5191 4.7249 -4.8369 39 1 -0.3464 3.4252 -5.1608 40 1 4.1813 1.0768 -2.7373 41 1 3.1073 -0.1163 -1.9684 42 1 2.9504 0.2323 -3.7068 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091576506.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:08 Heat of formation + Delta-G solvation = 73.677832 kcal Electronic energy + Delta-G solvation = -21377.344387 eV Core-core repulsion = 18393.847031 eV Total energy + Delta-G solvation = -2983.497356 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.80818 -36.96380 -35.11507 -33.55139 -32.69617 -31.12134 -30.12507 -28.06418 -26.99520 -25.78549 -25.58648 -22.51857 -22.31802 -21.53729 -19.53313 -18.29096 -16.56325 -16.53344 -15.55642 -15.24443 -14.85285 -14.51829 -14.28389 -14.02165 -13.85375 -13.70804 -13.21010 -12.78978 -12.52998 -12.21452 -12.16367 -12.07378 -11.89739 -11.44694 -11.20468 -11.08760 -10.99098 -10.84200 -10.77240 -10.61905 -10.39637 -10.13245 -10.04234 -9.96579 -9.35040 -8.53711 -8.39427 -7.63522 -6.44180 -6.10307 -4.13016 2.44620 3.05139 3.26419 3.34341 3.38467 3.48933 4.33860 4.58398 4.70536 4.98313 5.12517 5.25071 5.25773 5.34824 5.52683 5.60004 5.67325 5.74365 5.78650 5.82781 5.89884 5.98590 5.99947 6.05471 6.13483 6.29404 6.30497 6.39619 6.49780 6.63448 6.69213 6.91956 7.07760 7.10781 7.41255 7.78128 7.97970 8.06460 8.24739 8.30203 8.61649 8.68111 8.93626 9.51426 10.99930 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.005368 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.612829 B = 5214.428437 C = 5343.479815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.053 3.947 3 N -0.455 5.455 4 C 0.193 3.807 5 C -0.508 4.508 6 H 0.066 0.934 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.899 3.101 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.194 3.806 14 C 0.074 3.926 15 N -0.871 5.871 16 C 0.035 3.965 17 C -0.004 4.004 18 C -0.141 4.141 19 C -0.139 4.139 20 N -0.286 5.286 21 N -0.386 5.386 22 C 0.104 3.896 23 H 0.061 0.939 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.024 0.976 27 H 0.089 0.911 28 H -0.004 1.004 29 H 0.034 0.966 30 H 0.262 0.738 31 H 0.386 0.614 32 H 0.400 0.600 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.457 1.989 -8.038 14.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 N -0.179 5.179 4 C 0.069 3.931 5 C -0.547 4.547 6 H 0.084 0.916 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.727 3.273 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.210 1.210 13 C -0.027 4.027 14 C -0.036 4.036 15 N -0.419 5.419 16 C -0.132 4.132 17 C -0.024 4.024 18 C -0.199 4.199 19 C -0.197 4.197 20 N -0.112 5.112 21 N -0.177 5.177 22 C -0.038 4.038 23 H 0.080 0.920 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.042 0.958 27 H 0.108 0.892 28 H 0.014 0.986 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.213 0.787 32 H 0.229 0.771 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.834 1.777 -8.836 14.093 hybrid contribution 0.488 -0.329 1.449 1.564 sum -10.346 1.448 -7.387 12.795 Atomic orbital electron populations 1.21728 0.95846 1.00412 1.01882 1.22155 0.94919 0.89226 1.01061 1.60108 1.20370 1.15222 1.22181 1.19902 0.78781 0.97305 0.97068 1.21119 0.93368 1.45687 0.94518 0.91618 1.24977 0.96048 0.95273 0.98131 1.69968 1.00110 1.47876 1.35601 0.86418 0.78267 0.77922 0.84679 1.19578 1.21089 1.20976 1.19291 1.00386 1.00036 0.82961 1.16865 1.00385 0.97559 0.88773 1.41479 1.52339 1.40398 1.07664 1.21535 1.00899 0.99789 0.91011 1.19374 0.94356 0.91776 0.96919 1.21796 0.99251 0.98020 1.00793 1.21787 0.98775 1.00484 0.98647 1.76965 1.13731 1.04788 1.15684 1.48790 1.36000 1.27377 1.05527 1.21953 0.91208 0.88249 1.02371 0.92016 0.93556 0.93238 0.95763 0.89243 0.98616 0.94764 0.92860 0.78736 0.77112 0.90452 0.92147 0.92722 0.92645 0.92864 0.92729 0.92179 0.91021 0.89372 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.82 37.16 0.36 -1.88 16 2 C 0.05 1.00 5.29 -3.82 -0.02 0.98 16 3 N -0.45 -9.67 4.51 -174.11 -0.79 -10.46 16 4 C 0.19 4.90 4.15 -4.98 -0.02 4.88 16 5 C -0.51 -13.77 8.53 -34.44 -0.29 -14.06 16 6 H 0.07 1.75 7.47 -52.49 -0.39 1.36 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.08 13.29 55.43 0.74 -25.34 16 9 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 13 C 0.19 3.93 4.50 -152.08 -0.68 3.25 16 14 C 0.07 1.36 7.25 -83.46 -0.61 0.76 16 15 N -0.87 -13.53 9.23 32.49 0.30 -13.23 16 16 C 0.04 0.60 5.72 -82.31 -0.47 0.13 16 17 C 0.00 -0.05 3.34 -91.77 -0.31 -0.36 16 18 C -0.14 -1.73 9.17 37.16 0.34 -1.39 16 19 C -0.14 -1.61 9.18 37.16 0.34 -1.26 16 20 N -0.29 -5.38 12.56 33.71 0.42 -4.95 16 21 N -0.39 -7.52 4.05 -66.82 -0.27 -7.79 16 22 C 0.10 1.77 9.90 59.85 0.59 2.36 16 23 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.05 0.77 7.59 -51.93 -0.39 0.38 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.02 0.44 5.46 -51.93 -0.28 0.16 16 27 H 0.09 1.77 7.05 -51.93 -0.37 1.40 16 28 H 0.00 -0.10 6.07 -51.93 -0.32 -0.42 16 29 H 0.03 0.99 7.96 -51.93 -0.41 0.58 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.39 4.85 7.86 -40.82 -0.32 4.53 16 32 H 0.40 6.44 8.96 -40.82 -0.37 6.07 16 33 H 0.08 0.90 7.03 -51.93 -0.37 0.53 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.09 1.51 4.43 -51.93 -0.23 1.28 16 42 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 336.42 15.07 5.07 5.07 Total: -1.00 -30.35 336.42 -7.22 -37.57 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -6.81 Total: 8.13 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -0.86 Total: -5.11 kcal Atomic # 7 Polarization: -62.18 SS G_CDS: 0.40 Total: -61.78 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.35 -7.22 -37.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091576506.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.246 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds