Wall clock time and date at job start Mon Mar 30 2020 04:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.46729 * 2 1 4 4 C 1.46896 * 110.99892 * 168.92188 * 3 2 1 5 5 C 1.50703 * 109.47333 * 287.41005 * 4 3 2 6 6 H 1.07995 * 119.99848 * 4.86344 * 5 4 3 7 7 C 1.37874 * 120.00356 * 184.85455 * 5 4 3 8 8 N 1.31523 * 119.99856 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00362 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46796 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47091 * 120.00038 * 9 7 5 12 12 H 1.48496 * 109.47359 * 240.00356 * 9 7 5 13 13 C 1.39711 * 111.00121 * 292.87796 * 3 2 1 14 14 C 1.36402 * 126.28638 * 113.30648 * 13 3 2 15 15 N 1.41384 * 126.09678 * 359.97438 * 14 13 3 16 16 C 1.39958 * 107.80220 * 179.73723 * 14 13 3 17 17 C 1.50706 * 125.76766 * 180.28300 * 16 14 13 18 18 C 1.52996 * 109.46925 * 120.00191 * 17 16 14 19 19 C 1.53005 * 109.46645 * 239.99447 * 17 16 14 20 20 N 1.30969 * 108.45558 * 0.25781 * 16 14 13 21 21 N 1.36088 * 126.28357 * 293.48969 * 13 3 2 22 22 C 1.46509 * 126.07878 * 0.03756 * 21 13 3 23 23 H 1.09002 * 109.47279 * 305.19540 * 1 2 3 24 24 H 1.08997 * 109.47585 * 65.20277 * 1 2 3 25 25 H 1.09004 * 109.46539 * 185.19986 * 1 2 3 26 26 H 1.09003 * 109.47234 * 240.00334 * 2 1 3 27 27 H 1.08998 * 109.47090 * 119.99808 * 2 1 3 28 28 H 1.09002 * 109.47179 * 47.41365 * 4 3 2 29 29 H 1.09000 * 109.47568 * 167.41413 * 4 3 2 30 30 H 0.96993 * 119.99825 * 179.97438 * 8 7 5 31 31 H 0.97004 * 120.00142 * 179.72162 * 15 14 13 32 32 H 0.96998 * 120.00231 * 359.43975 * 15 14 13 33 33 H 1.08996 * 109.47384 * 359.97438 * 17 16 14 34 34 H 1.08998 * 109.47781 * 59.99314 * 18 17 16 35 35 H 1.09006 * 109.47378 * 180.02562 * 18 17 16 36 36 H 1.09005 * 109.46821 * 299.98955 * 18 17 16 37 37 H 1.08997 * 109.46786 * 60.00566 * 19 17 16 38 38 H 1.09008 * 109.46661 * 179.97438 * 19 17 16 39 39 H 1.08996 * 109.47549 * 300.00291 * 19 17 16 40 40 H 1.08997 * 109.46938 * 265.10559 * 22 21 13 41 41 H 1.08996 * 109.46965 * 25.10503 * 22 21 13 42 42 H 1.08996 * 109.46847 * 145.10642 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4639 1.4328 0.2635 5 6 3.7210 1.1120 1.7134 6 1 2.9032 0.8177 2.3545 7 6 5.0001 1.1939 2.2214 8 7 5.9960 1.5526 1.4407 9 14 5.3188 0.7955 4.0183 10 1 4.0414 0.4208 4.6763 11 1 6.2744 -0.3375 4.1122 12 1 5.8942 1.9857 4.6948 13 6 1.7084 2.0261 -1.2017 14 6 0.8439 3.0693 -1.3598 15 7 0.0997 3.6971 -0.3347 16 6 0.8291 3.4108 -2.7170 17 6 0.0145 4.5160 -3.3384 18 6 0.9503 5.5261 -4.0054 19 6 -0.9296 3.9255 -4.3877 20 7 1.6433 2.6078 -3.3555 21 7 2.2094 1.7222 -2.4299 22 6 3.1738 0.6608 -2.7298 23 1 -0.3634 0.5923 0.8398 24 1 -0.3634 0.4310 -0.9329 25 1 -0.3632 -1.0235 0.0931 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9725 0.7026 -0.3660 29 1 3.8413 2.4307 0.0399 30 1 6.8958 1.6106 1.7981 31 1 -0.4891 4.4383 -0.5470 32 1 0.1747 3.3842 0.5804 33 1 -0.5690 5.0161 -2.5654 34 1 1.5335 5.0258 -4.7784 35 1 0.3612 6.3258 -4.4544 36 1 1.6229 5.9468 -3.2578 37 1 -1.5963 3.2059 -3.9126 38 1 -1.5191 4.7249 -4.8369 39 1 -0.3464 3.4252 -5.1608 40 1 4.1813 1.0768 -2.7373 41 1 3.1073 -0.1163 -1.9684 42 1 2.9504 0.2323 -3.7068 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091576506.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:07 Heat of formation + Delta-G solvation = 53.165290 kcal Electronic energy + Delta-G solvation = -21378.233877 eV Core-core repulsion = 18393.847031 eV Total energy + Delta-G solvation = -2984.386847 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.25419 -38.51312 -36.37468 -34.96448 -34.63546 -32.48137 -31.68905 -29.76839 -27.93413 -27.55966 -26.93451 -24.31879 -23.69934 -22.99567 -20.98587 -19.62253 -18.56828 -17.91736 -17.12331 -16.85598 -16.48602 -16.03864 -15.52908 -15.45035 -15.36786 -14.89251 -14.42483 -14.30694 -14.22087 -13.88828 -13.54720 -13.35136 -12.92966 -12.91551 -12.80732 -12.71300 -12.39870 -12.33288 -12.04205 -11.97619 -11.92181 -11.82029 -11.52083 -11.36085 -11.28276 -10.65409 -9.85645 -9.34776 -8.23552 -7.82782 -6.33208 0.97175 1.41155 1.42475 1.55599 1.65757 2.07211 2.38999 3.02115 3.13551 3.34549 3.73559 3.95082 4.03392 4.18053 4.27016 4.35437 4.35897 4.48342 4.53214 4.57242 4.69000 4.85057 4.87573 4.87813 5.03174 5.03900 5.04991 5.11450 5.16920 5.22406 5.35625 5.43592 5.46383 5.56496 5.71269 5.84255 6.08082 6.17860 6.72390 6.80468 6.90625 7.03768 7.36503 7.45000 8.88505 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.005368 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.612829 B = 5214.428437 C = 5343.479815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.051 3.949 3 N -0.453 5.453 4 C 0.215 3.785 5 C -0.520 4.520 6 H 0.068 0.932 7 C 0.005 3.995 8 N -0.934 5.934 9 Si 0.970 3.030 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.282 1.282 13 C 0.159 3.841 14 C 0.071 3.929 15 N -0.860 5.860 16 C 0.039 3.961 17 C -0.006 4.006 18 C -0.137 4.137 19 C -0.132 4.132 20 N -0.297 5.297 21 N -0.400 5.400 22 C 0.105 3.895 23 H 0.061 0.939 24 H 0.038 0.962 25 H 0.076 0.924 26 H 0.027 0.973 27 H 0.076 0.924 28 H -0.019 1.019 29 H -0.012 1.012 30 H 0.264 0.736 31 H 0.402 0.598 32 H 0.398 0.602 33 H 0.097 0.903 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.040 0.960 37 H 0.049 0.951 38 H 0.084 0.916 39 H 0.046 0.954 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.456 2.337 -7.801 15.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.075 4.075 3 N -0.177 5.177 4 C 0.090 3.910 5 C -0.558 4.558 6 H 0.086 0.914 7 C -0.194 4.194 8 N -0.575 5.575 9 Si 0.795 3.205 10 H -0.184 1.184 11 H -0.204 1.204 12 H -0.208 1.208 13 C -0.061 4.061 14 C -0.040 4.040 15 N -0.409 5.409 16 C -0.129 4.129 17 C -0.026 4.026 18 C -0.195 4.195 19 C -0.190 4.190 20 N -0.122 5.122 21 N -0.191 5.191 22 C -0.036 4.036 23 H 0.080 0.920 24 H 0.057 0.943 25 H 0.094 0.906 26 H 0.045 0.955 27 H 0.095 0.905 28 H -0.001 1.001 29 H 0.006 0.994 30 H 0.073 0.927 31 H 0.231 0.769 32 H 0.227 0.773 33 H 0.115 0.885 34 H 0.065 0.935 35 H 0.105 0.895 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.103 0.897 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.100 0.900 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.870 2.129 -8.604 15.627 hybrid contribution 1.065 -0.379 1.298 1.721 sum -11.805 1.750 -7.306 13.993 Atomic orbital electron populations 1.21592 0.93219 1.02063 1.01405 1.22223 0.96961 0.87817 1.00525 1.59980 1.17416 1.16756 1.23504 1.19440 0.81411 0.93968 0.96187 1.21419 0.93632 1.45413 0.95317 0.91363 1.25887 0.95767 0.94950 1.02747 1.70103 1.00600 1.48996 1.37773 0.85314 0.78494 0.77682 0.79002 1.18352 1.20430 1.20816 1.19410 1.02225 1.01463 0.82966 1.17175 1.00037 0.96803 0.89972 1.41444 1.51960 1.40515 1.06958 1.22230 1.00213 0.99955 0.90546 1.19616 0.94392 0.90691 0.97923 1.21767 0.99167 0.98511 1.00009 1.21736 0.98329 1.01244 0.97719 1.76929 1.14165 1.05087 1.16059 1.48878 1.36701 1.28161 1.05409 1.21960 0.90283 0.87737 1.03642 0.92001 0.94277 0.90555 0.95497 0.90522 1.00135 0.99353 0.92719 0.76863 0.77325 0.88451 0.93515 0.89516 0.94084 0.93194 0.89746 0.93481 0.92465 0.89955 0.87836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 9.82 71.98 0.71 -3.12 16 2 C 0.05 1.94 5.29 86.30 0.46 2.39 16 3 N -0.45 -19.68 4.51 -704.75 -3.18 -22.86 16 4 C 0.22 11.37 4.15 85.56 0.36 11.72 16 5 C -0.52 -28.69 8.53 25.60 0.22 -28.47 16 6 H 0.07 3.66 7.47 -2.91 -0.02 3.64 16 7 C 0.00 0.26 5.46 84.65 0.46 0.73 16 8 N -0.93 -55.76 13.29 21.45 0.28 -55.48 16 9 Si 0.97 43.48 29.54 68.60 2.03 45.50 16 10 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 11 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 13 C 0.16 6.56 4.50 131.04 0.59 7.15 16 14 C 0.07 2.57 7.25 37.59 0.27 2.84 16 15 N -0.86 -25.64 9.23 -51.12 -0.47 -26.11 16 16 C 0.04 1.30 5.72 43.11 0.25 1.55 16 17 C -0.01 -0.14 3.34 -11.54 -0.04 -0.18 16 18 C -0.14 -3.09 9.17 71.98 0.66 -2.43 16 19 C -0.13 -2.70 9.18 71.98 0.66 -2.04 16 20 N -0.30 -11.15 12.56 -47.26 -0.59 -11.74 16 21 N -0.40 -15.87 4.05 -365.30 -1.48 -17.34 16 22 C 0.11 3.70 9.90 127.77 1.27 4.97 16 23 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.04 1.24 7.59 -2.39 -0.02 1.23 16 25 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.03 0.99 5.46 -2.39 -0.01 0.98 16 27 H 0.08 3.05 7.05 -2.39 -0.02 3.03 16 28 H -0.02 -1.04 6.07 -2.39 -0.01 -1.05 16 29 H -0.01 -0.72 7.96 -2.39 -0.02 -0.74 16 30 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 31 H 0.40 9.22 7.86 -92.71 -0.73 8.49 16 32 H 0.40 12.44 8.96 -92.71 -0.83 11.60 16 33 H 0.10 1.94 7.03 -2.39 -0.02 1.92 16 34 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.08 2.94 4.43 -2.39 -0.01 2.93 16 42 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -66.66 336.42 1.91 -64.75 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: -0.53 Total: 28.17 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 5.85 Total: -4.88 kcal Atomic # 7 Polarization: -128.10 SS G_CDS: -5.44 Total: -133.54 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -66.66 1.91 -64.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091576506.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.912 kcal (2) G-P(sol) polarization free energy of solvation -66.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds