Wall clock time and date at job start Mon Mar 30 2020 04:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.46738 * 2 1 4 4 C 1.50692 * 109.46984 * 180.02562 * 3 2 1 5 5 N 1.30972 * 125.77937 * 90.02394 * 4 3 2 6 6 N 1.40067 * 108.47726 * 179.97438 * 5 4 3 7 7 C 1.46500 * 126.08390 * 179.97438 * 6 5 4 8 8 C 1.36087 * 107.83485 * 359.97438 * 6 5 4 9 9 N 1.39704 * 126.28018 * 180.02562 * 8 6 5 10 10 C 1.46901 * 110.99913 * 118.57562 * 9 8 6 11 11 C 1.46903 * 111.00114 * 242.52870 * 9 8 6 12 12 H 1.08994 * 109.46853 * 300.00295 * 11 9 8 13 13 C 1.52993 * 109.46913 * 60.00258 * 11 9 8 14 14 C 1.50703 * 109.47100 * 180.02562 * 11 9 8 15 15 H 1.08004 * 120.00019 * 0.02562 * 14 11 9 16 16 C 1.37873 * 119.99718 * 180.02562 * 14 11 9 17 17 N 1.31509 * 120.00115 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 119.99885 * 180.02562 * 16 14 11 19 19 H 1.48502 * 109.47403 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47532 * 119.99783 * 18 16 14 21 21 H 1.48499 * 109.47092 * 239.99795 * 18 16 14 22 22 C 1.36397 * 107.43216 * 359.76917 * 8 6 5 23 23 N 1.41392 * 126.10017 * 180.22429 * 22 8 6 24 24 H 1.08999 * 109.46961 * 60.00283 * 1 2 3 25 25 H 1.09006 * 109.46585 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47080 * 300.00164 * 1 2 3 27 27 H 1.08999 * 109.47433 * 119.99472 * 2 1 3 28 28 H 1.09001 * 109.47276 * 240.00548 * 2 1 3 29 29 H 1.08999 * 109.46728 * 299.99904 * 3 2 1 30 30 H 1.08997 * 109.47014 * 59.99798 * 3 2 1 31 31 H 1.08996 * 109.46793 * 85.04426 * 7 6 5 32 32 H 1.08997 * 109.47241 * 205.04793 * 7 6 5 33 33 H 1.09006 * 109.46868 * 325.04703 * 7 6 5 34 34 H 1.09001 * 109.47065 * 66.49596 * 10 9 8 35 35 H 1.09006 * 109.47325 * 186.49580 * 10 9 8 36 36 H 1.08998 * 109.47015 * 306.49218 * 10 9 8 37 37 H 1.09001 * 109.47725 * 60.00464 * 13 11 9 38 38 H 1.09004 * 109.46898 * 180.02562 * 13 11 9 39 39 H 1.09003 * 109.47463 * 299.99846 * 13 11 9 40 40 H 0.97004 * 119.99892 * 179.97438 * 17 16 14 41 41 H 0.96993 * 120.00558 * 180.19613 * 23 22 8 42 42 H 0.97002 * 119.99475 * 0.19560 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4427 -0.0006 5 7 4.3122 1.4433 -1.0635 6 7 5.6497 1.4437 -0.6475 7 6 6.8252 1.4439 -1.5217 8 6 5.6629 1.4439 0.7133 9 7 6.7971 1.4448 1.5290 10 6 6.8406 2.6493 2.3688 11 6 6.8560 0.2281 2.3502 12 1 5.9703 0.1738 2.9831 13 6 6.9079 -0.9999 1.4392 14 6 8.0895 0.2651 3.2151 15 1 8.7622 1.1083 3.1607 16 6 8.3592 -0.7775 4.0760 17 7 7.5399 -1.8039 4.1427 18 14 9.8878 -0.7313 5.1487 19 1 10.6384 0.5231 4.8873 20 1 9.4908 -0.7822 6.5788 21 1 10.7498 -1.8985 4.8325 22 6 4.3656 1.4488 1.1346 23 7 3.9261 1.4552 2.4784 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 7.0634 2.4678 -1.8099 32 1 7.6724 1.0092 -0.9915 33 1 6.6142 0.8550 -2.4144 34 1 6.0167 2.6249 3.0821 35 1 7.7872 2.6823 2.9082 36 1 6.7501 3.5346 1.7393 37 1 7.7937 -0.9456 0.8062 38 1 6.9512 -1.9027 2.0485 39 1 6.0155 -1.0265 0.8138 40 1 7.7299 -2.5376 4.7482 41 1 2.9770 1.4555 2.6783 42 1 4.5738 1.4592 3.2005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091580626.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:05 Heat of formation + Delta-G solvation = 80.082925 kcal Electronic energy + Delta-G solvation = -21453.096619 eV Core-core repulsion = 18469.877009 eV Total energy + Delta-G solvation = -2983.219610 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.75431 -36.79379 -35.22755 -33.47569 -32.75495 -31.36389 -29.28460 -28.30643 -27.42690 -25.17526 -24.50181 -24.00620 -21.60391 -20.95705 -19.28860 -18.99033 -16.64711 -16.19747 -15.49502 -15.21170 -14.93870 -14.59355 -14.42929 -13.86041 -13.56661 -13.42881 -13.15426 -12.87601 -12.38987 -12.31380 -12.04729 -11.98576 -11.70099 -11.27336 -11.11557 -11.06590 -10.90672 -10.73748 -10.62068 -10.28131 -10.21897 -10.11915 -10.09220 -9.90014 -9.00573 -8.51155 -8.37845 -7.46447 -6.45572 -6.07523 -4.13548 2.43750 3.00539 3.25289 3.33848 3.37263 3.45335 4.34823 4.62867 4.81036 5.06505 5.16402 5.22468 5.25079 5.33122 5.57157 5.65068 5.67838 5.83235 5.91481 5.94081 6.00742 6.06866 6.09237 6.16109 6.30586 6.44805 6.53636 6.65508 6.82476 6.94318 7.01407 7.08809 7.38438 7.46864 7.73819 7.83612 8.03773 8.18070 8.26369 8.30668 8.55355 8.71349 8.92331 9.51857 10.98625 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.022934 B = 0.005718 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.625484 B = 4896.015943 C = 5403.719474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.028 4.028 4 C 0.034 3.966 5 N -0.291 5.291 6 N -0.359 5.359 7 C 0.118 3.882 8 C 0.212 3.788 9 N -0.488 5.488 10 C 0.052 3.948 11 C 0.224 3.776 12 H 0.013 0.987 13 C -0.128 4.128 14 C -0.509 4.509 15 H 0.065 0.935 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.897 3.103 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.032 3.968 23 N -0.876 5.876 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.023 0.977 35 H 0.081 0.919 36 H 0.042 0.958 37 H 0.029 0.971 38 H 0.086 0.914 39 H 0.006 0.994 40 H 0.261 0.739 41 H 0.386 0.614 42 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.265 5.703 -6.190 11.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.068 4.068 4 C -0.133 4.133 5 N -0.117 5.117 6 N -0.146 5.146 7 C -0.024 4.024 8 C -0.011 4.011 9 N -0.212 5.212 10 C -0.096 4.096 11 C 0.119 3.881 12 H 0.031 0.969 13 C -0.187 4.187 14 C -0.548 4.548 15 H 0.083 0.917 16 C -0.140 4.140 17 N -0.528 5.528 18 Si 0.725 3.275 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.078 4.078 23 N -0.426 5.426 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.041 0.959 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.105 0.895 39 H 0.025 0.975 40 H 0.071 0.929 41 H 0.213 0.787 42 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -7.648 5.533 -7.832 12.265 hybrid contribution 0.197 -0.180 2.234 2.249 sum -7.451 5.353 -5.598 10.747 Atomic orbital electron populations 1.21772 0.95895 1.01492 1.01552 1.21480 0.95122 0.96299 1.02768 1.19839 0.87255 0.97317 1.02344 1.21609 0.95801 1.06080 0.89831 1.77096 0.86199 1.26391 1.22010 1.47936 1.04493 1.58504 1.03654 1.21623 0.85050 1.02078 0.93691 1.18612 0.89880 1.07947 0.84705 1.58936 1.33374 1.05350 1.23586 1.22155 1.01856 0.90293 0.95303 1.19338 0.96800 0.82876 0.89054 0.96909 1.21755 0.96657 1.01952 0.98296 1.21177 1.07706 1.05306 1.20608 0.91680 1.24912 0.96771 0.95292 0.97049 1.69912 1.36681 1.08561 1.37639 0.86456 0.82925 0.78067 0.80039 1.19712 1.21102 1.21045 1.17739 0.91667 1.12083 0.86358 1.41834 1.08406 1.90251 1.02091 0.92883 0.92836 0.92789 0.91635 0.91854 0.91003 0.90950 0.91974 0.88685 0.90764 0.95858 0.90009 0.93893 0.95167 0.89513 0.97487 0.92941 0.78661 0.77215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 37.16 0.37 -1.12 16 2 C -0.12 -1.51 5.92 -26.72 -0.16 -1.67 16 3 C -0.03 -0.38 5.63 -27.88 -0.16 -0.54 16 4 C 0.03 0.60 6.47 -82.32 -0.53 0.06 16 5 N -0.29 -5.53 12.56 33.71 0.42 -5.10 16 6 N -0.36 -6.87 4.05 -66.82 -0.27 -7.14 16 7 C 0.12 1.82 11.45 59.85 0.68 2.50 16 8 C 0.21 4.34 4.26 -152.09 -0.65 3.69 16 9 N -0.49 -10.46 4.54 -174.31 -0.79 -11.25 16 10 C 0.05 1.00 8.89 60.07 0.53 1.54 16 11 C 0.22 5.48 1.86 -68.87 -0.13 5.36 16 12 H 0.01 0.35 6.03 -51.93 -0.31 0.04 16 13 C -0.13 -3.21 8.85 37.15 0.33 -2.88 16 14 C -0.51 -13.31 7.96 -34.44 -0.27 -13.59 16 15 H 0.07 1.69 6.39 -52.48 -0.34 1.35 16 16 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 17 N -0.89 -24.65 11.32 55.43 0.63 -24.03 16 18 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.03 0.61 6.76 -83.46 -0.56 0.05 16 23 N -0.88 -15.04 8.59 32.49 0.28 -14.76 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.87 7.68 -51.93 -0.40 0.47 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.09 1.53 8.01 -51.93 -0.42 1.12 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.02 0.44 6.00 -51.93 -0.31 0.13 16 35 H 0.08 1.61 6.33 -51.93 -0.33 1.28 16 36 H 0.04 0.76 8.10 -51.93 -0.42 0.34 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 39 H 0.01 0.15 7.22 -51.93 -0.37 -0.22 16 40 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.39 5.54 8.34 -40.82 -0.34 5.20 16 42 H 0.40 7.33 5.43 -40.82 -0.22 7.11 16 LS Contribution 332.34 15.07 5.01 5.01 Total: -1.00 -29.31 332.34 -7.10 -36.41 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -6.72 Total: 10.30 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -0.64 Total: -5.05 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: 0.27 Total: -62.28 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.31 -7.10 -36.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091580626.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.490 kcal (2) G-P(sol) polarization free energy of solvation -29.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds