Wall clock time and date at job start Mon Mar 30 2020 04:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.46738 * 2 1 4 4 C 1.50692 * 109.46984 * 180.02562 * 3 2 1 5 5 N 1.30972 * 125.77937 * 90.02394 * 4 3 2 6 6 N 1.40067 * 108.47726 * 179.97438 * 5 4 3 7 7 C 1.46500 * 126.08390 * 179.97438 * 6 5 4 8 8 C 1.36087 * 107.83485 * 359.97438 * 6 5 4 9 9 N 1.39704 * 126.28018 * 180.02562 * 8 6 5 10 10 C 1.46901 * 110.99913 * 118.57562 * 9 8 6 11 11 C 1.46903 * 111.00114 * 242.52870 * 9 8 6 12 12 H 1.08994 * 109.46853 * 300.00295 * 11 9 8 13 13 C 1.52993 * 109.46913 * 60.00258 * 11 9 8 14 14 C 1.50703 * 109.47100 * 180.02562 * 11 9 8 15 15 H 1.08004 * 120.00019 * 0.02562 * 14 11 9 16 16 C 1.37873 * 119.99718 * 180.02562 * 14 11 9 17 17 N 1.31509 * 120.00115 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 119.99885 * 180.02562 * 16 14 11 19 19 H 1.48502 * 109.47403 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47532 * 119.99783 * 18 16 14 21 21 H 1.48499 * 109.47092 * 239.99795 * 18 16 14 22 22 C 1.36397 * 107.43216 * 359.76917 * 8 6 5 23 23 N 1.41392 * 126.10017 * 180.22429 * 22 8 6 24 24 H 1.08999 * 109.46961 * 60.00283 * 1 2 3 25 25 H 1.09006 * 109.46585 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47080 * 300.00164 * 1 2 3 27 27 H 1.08999 * 109.47433 * 119.99472 * 2 1 3 28 28 H 1.09001 * 109.47276 * 240.00548 * 2 1 3 29 29 H 1.08999 * 109.46728 * 299.99904 * 3 2 1 30 30 H 1.08997 * 109.47014 * 59.99798 * 3 2 1 31 31 H 1.08996 * 109.46793 * 85.04426 * 7 6 5 32 32 H 1.08997 * 109.47241 * 205.04793 * 7 6 5 33 33 H 1.09006 * 109.46868 * 325.04703 * 7 6 5 34 34 H 1.09001 * 109.47065 * 66.49596 * 10 9 8 35 35 H 1.09006 * 109.47325 * 186.49580 * 10 9 8 36 36 H 1.08998 * 109.47015 * 306.49218 * 10 9 8 37 37 H 1.09001 * 109.47725 * 60.00464 * 13 11 9 38 38 H 1.09004 * 109.46898 * 180.02562 * 13 11 9 39 39 H 1.09003 * 109.47463 * 299.99846 * 13 11 9 40 40 H 0.97004 * 119.99892 * 179.97438 * 17 16 14 41 41 H 0.96993 * 120.00558 * 180.19613 * 23 22 8 42 42 H 0.97002 * 119.99475 * 0.19560 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4427 -0.0006 5 7 4.3122 1.4433 -1.0635 6 7 5.6497 1.4437 -0.6475 7 6 6.8252 1.4439 -1.5217 8 6 5.6629 1.4439 0.7133 9 7 6.7971 1.4448 1.5290 10 6 6.8406 2.6493 2.3688 11 6 6.8560 0.2281 2.3502 12 1 5.9703 0.1738 2.9831 13 6 6.9079 -0.9999 1.4392 14 6 8.0895 0.2651 3.2151 15 1 8.7622 1.1083 3.1607 16 6 8.3592 -0.7775 4.0760 17 7 7.5399 -1.8039 4.1427 18 14 9.8878 -0.7313 5.1487 19 1 10.6384 0.5231 4.8873 20 1 9.4908 -0.7822 6.5788 21 1 10.7498 -1.8985 4.8325 22 6 4.3656 1.4488 1.1346 23 7 3.9261 1.4552 2.4784 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 7.0634 2.4678 -1.8099 32 1 7.6724 1.0092 -0.9915 33 1 6.6142 0.8550 -2.4144 34 1 6.0167 2.6249 3.0821 35 1 7.7872 2.6823 2.9082 36 1 6.7501 3.5346 1.7393 37 1 7.7937 -0.9456 0.8062 38 1 6.9512 -1.9027 2.0485 39 1 6.0155 -1.0265 0.8138 40 1 7.7299 -2.5376 4.7482 41 1 2.9770 1.4555 2.6783 42 1 4.5738 1.4592 3.2005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091580626.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:05 Heat of formation + Delta-G solvation = 61.472129 kcal Electronic energy + Delta-G solvation = -21453.903644 eV Core-core repulsion = 18469.877009 eV Total energy + Delta-G solvation = -2984.026635 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.20907 -38.47400 -36.40777 -35.04694 -34.40131 -32.73887 -31.20051 -29.61489 -28.72516 -27.13119 -25.76755 -25.66245 -22.79411 -22.62370 -20.65050 -20.55825 -18.38400 -17.81504 -17.20526 -16.70117 -16.31894 -16.19830 -15.66336 -15.26018 -15.11947 -14.75289 -14.67057 -14.27730 -13.96637 -13.69807 -13.45257 -13.28168 -13.00526 -12.91782 -12.71548 -12.61048 -12.35034 -12.16133 -12.09165 -12.08106 -11.92883 -11.74556 -11.47633 -11.36443 -10.95306 -10.53724 -9.80740 -9.17840 -8.11520 -7.89102 -6.22846 0.96868 1.43550 1.46555 1.56918 1.64210 2.00730 2.43945 3.15140 3.25558 3.31266 3.83741 4.00354 4.20130 4.26374 4.42334 4.51044 4.55733 4.58389 4.66270 4.72785 4.75587 4.81534 4.86476 4.98069 5.01296 5.03758 5.06176 5.17075 5.21542 5.36142 5.46459 5.48902 5.63046 5.68942 5.75780 6.07944 6.20580 6.27809 6.68199 6.80461 6.90145 7.06131 7.26024 7.46537 8.95317 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.022934 B = 0.005718 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.625484 B = 4896.015943 C = 5403.719474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C -0.026 4.026 4 C 0.033 3.967 5 N -0.301 5.301 6 N -0.367 5.367 7 C 0.113 3.887 8 C 0.182 3.818 9 N -0.488 5.488 10 C 0.055 3.945 11 C 0.233 3.767 12 H -0.008 1.008 13 C -0.111 4.111 14 C -0.519 4.519 15 H 0.065 0.935 16 C 0.016 3.984 17 N -0.918 5.918 18 Si 0.960 3.040 19 H -0.265 1.265 20 H -0.282 1.282 21 H -0.285 1.285 22 C 0.023 3.977 23 N -0.869 5.869 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.024 0.976 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.027 0.973 38 H 0.062 0.938 39 H 0.003 0.997 40 H 0.261 0.739 41 H 0.400 0.600 42 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.856 6.682 -6.411 12.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C -0.065 4.065 4 C -0.135 4.135 5 N -0.126 5.126 6 N -0.155 5.155 7 C -0.028 4.028 8 C -0.041 4.041 9 N -0.211 5.211 10 C -0.092 4.092 11 C 0.128 3.872 12 H 0.009 0.991 13 C -0.169 4.169 14 C -0.557 4.557 15 H 0.083 0.917 16 C -0.183 4.183 17 N -0.558 5.558 18 Si 0.786 3.214 19 H -0.189 1.189 20 H -0.208 1.208 21 H -0.211 1.211 22 C -0.088 4.088 23 N -0.420 5.420 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.043 0.957 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.081 0.919 39 H 0.022 0.978 40 H 0.070 0.930 41 H 0.229 0.771 42 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -8.250 6.532 -8.068 13.259 hybrid contribution 0.330 -0.476 2.255 2.328 sum -7.919 6.056 -5.813 11.540 Atomic orbital electron populations 1.21724 0.93377 1.02248 1.02724 1.21414 0.97241 0.95377 1.01157 1.20000 0.84515 0.98093 1.03875 1.22208 0.97597 1.04801 0.88860 1.77059 0.86400 1.26536 1.22654 1.48200 1.05202 1.58538 1.03511 1.21814 0.83708 1.03672 0.93613 1.18715 0.90003 1.10049 0.85333 1.58767 1.34372 1.04713 1.23288 1.22144 1.01535 0.90127 0.95418 1.19054 0.95354 0.84048 0.88787 0.99056 1.21534 0.96252 1.01392 0.97714 1.21425 1.08166 1.05275 1.20862 0.91667 1.25650 0.99401 0.94962 0.98262 1.70035 1.38267 1.09140 1.38347 0.85473 0.79541 0.78090 0.78293 1.18901 1.20787 1.21128 1.18018 0.91777 1.11656 0.87351 1.41784 1.09070 1.89858 1.01275 0.91718 0.92353 0.91596 0.93411 0.93342 0.89672 0.89140 0.89902 0.89816 0.89067 0.95701 0.90628 0.92226 0.95397 0.91920 0.97815 0.92976 0.77108 0.77974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.91 71.98 0.71 -1.79 16 2 C -0.11 -2.73 5.92 30.60 0.18 -2.55 16 3 C -0.03 -0.64 5.63 29.85 0.17 -0.48 16 4 C 0.03 1.12 6.47 43.10 0.28 1.40 16 5 N -0.30 -11.10 12.56 -47.27 -0.59 -11.69 16 6 N -0.37 -13.77 4.05 -365.32 -1.48 -15.25 16 7 C 0.11 3.38 11.45 127.77 1.46 4.84 16 8 C 0.18 7.39 4.26 131.04 0.56 7.95 16 9 N -0.49 -20.83 4.54 -705.41 -3.20 -24.03 16 10 C 0.06 2.11 8.89 127.69 1.13 3.25 16 11 C 0.23 11.54 1.86 44.17 0.08 11.63 16 12 H -0.01 -0.43 6.03 -2.39 -0.01 -0.44 16 13 C -0.11 -5.63 8.85 71.98 0.64 -5.00 16 14 C -0.52 -27.16 7.96 25.60 0.20 -26.96 16 15 H 0.07 3.36 6.39 -2.91 -0.02 3.34 16 16 C 0.02 0.87 5.30 84.65 0.45 1.32 16 17 N -0.92 -51.47 11.32 21.45 0.24 -51.22 16 18 Si 0.96 42.18 29.54 68.60 2.03 44.20 16 19 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 22 C 0.02 0.87 6.76 37.58 0.25 1.12 16 23 N -0.87 -29.38 8.59 -51.12 -0.44 -29.82 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.09 1.94 7.68 -2.39 -0.02 1.92 16 31 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.08 2.68 8.01 -2.39 -0.02 2.66 16 33 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 34 H 0.02 0.93 6.00 -2.39 -0.01 0.91 16 35 H 0.08 2.94 6.33 -2.38 -0.02 2.93 16 36 H 0.06 2.05 8.10 -2.39 -0.02 2.03 16 37 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.06 3.49 6.07 -2.38 -0.01 3.47 16 39 H 0.00 0.14 7.22 -2.39 -0.02 0.13 16 40 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 41 H 0.40 11.02 8.34 -92.71 -0.77 10.24 16 42 H 0.39 14.42 5.43 -92.71 -0.50 13.92 16 Total: -1.00 -61.84 332.34 2.42 -59.42 By element: Atomic # 1 Polarization: 33.93 SS G_CDS: -0.25 Total: 33.68 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 6.12 Total: -5.28 kcal Atomic # 7 Polarization: -126.55 SS G_CDS: -5.47 Total: -132.02 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -61.84 2.42 -59.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091580626.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.887 kcal (2) G-P(sol) polarization free energy of solvation -61.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds