Wall clock time and date at job start Mon Mar 30 2020 04:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47110 * 2 1 4 4 C 1.50698 * 109.47090 * 179.97438 * 3 2 1 5 5 N 1.30971 * 125.77429 * 90.02034 * 4 3 2 6 6 N 1.40065 * 108.47466 * 179.97438 * 5 4 3 7 7 C 1.46500 * 126.08385 * 179.97438 * 6 5 4 8 8 C 1.36088 * 107.83533 * 0.02562 * 6 5 4 9 9 N 1.39715 * 126.28069 * 179.97438 * 8 6 5 10 10 C 1.46896 * 111.00000 * 241.44052 * 9 8 6 11 11 C 1.46900 * 110.99799 * 117.48797 * 9 8 6 12 12 H 1.09007 * 109.47027 * 59.99982 * 11 9 8 13 13 C 1.52995 * 109.47523 * 299.99923 * 11 9 8 14 14 C 1.50701 * 109.47003 * 179.97438 * 11 9 8 15 15 H 1.07998 * 119.99844 * 26.70786 * 14 11 9 16 16 C 1.37876 * 120.00128 * 206.97729 * 14 11 9 17 17 N 1.31509 * 120.00278 * 184.80663 * 16 14 11 18 18 Si 1.86804 * 119.99807 * 4.81406 * 16 14 11 19 19 H 1.48495 * 109.47272 * 93.79233 * 18 16 14 20 20 H 1.48505 * 109.46942 * 213.79278 * 18 16 14 21 21 H 1.48505 * 109.47045 * 333.78877 * 18 16 14 22 22 C 1.36400 * 107.43427 * 0.25794 * 8 6 5 23 23 N 1.41380 * 126.10127 * 179.72469 * 22 8 6 24 24 H 1.09000 * 109.47062 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47037 * 299.99998 * 1 2 3 26 26 H 1.08998 * 109.47167 * 60.00614 * 1 2 3 27 27 H 1.08994 * 109.47569 * 239.99429 * 2 1 3 28 28 H 1.09005 * 109.46794 * 119.99453 * 2 1 3 29 29 H 1.08995 * 109.46909 * 59.99921 * 3 2 1 30 30 H 1.08998 * 109.46604 * 299.99730 * 3 2 1 31 31 H 1.08999 * 109.46972 * 274.83970 * 7 6 5 32 32 H 1.08999 * 109.46868 * 34.83933 * 7 6 5 33 33 H 1.08999 * 109.47033 * 154.83866 * 7 6 5 34 34 H 1.09004 * 109.47051 * 289.43207 * 10 9 8 35 35 H 1.09000 * 109.47109 * 49.42227 * 10 9 8 36 36 H 1.08989 * 109.47671 * 169.42782 * 10 9 8 37 37 H 1.09008 * 109.47205 * 65.77487 * 13 11 9 38 38 H 1.08998 * 109.47673 * 185.78071 * 13 11 9 39 39 H 1.09005 * 109.47008 * 305.77875 * 13 11 9 40 40 H 0.96998 * 120.00482 * 180.02562 * 17 16 14 41 41 H 0.97008 * 119.99859 * 359.97438 * 23 22 8 42 42 H 0.97005 * 120.00347 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.3131 1.4427 -1.0616 6 7 5.6502 1.4432 -0.6446 7 6 6.8264 1.4431 -1.5179 8 6 5.6624 1.4427 0.7163 9 7 6.7960 1.4425 1.5329 10 6 6.8399 0.2377 2.3721 11 6 6.8530 2.6588 2.3547 12 1 5.9667 2.7120 2.9870 13 6 6.9045 3.8874 1.4444 14 6 8.0858 2.6226 3.2206 15 1 8.9529 2.0629 2.9025 16 6 8.1048 3.2995 4.4216 17 7 9.2103 3.3468 5.1324 18 14 6.5602 4.1492 5.0393 19 1 5.8193 3.2334 5.9434 20 1 6.9352 5.3802 5.7806 21 1 5.6983 4.5098 3.8850 22 6 4.3647 1.4361 1.1365 23 7 3.9242 1.4278 2.4799 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 7.0667 0.4190 -1.8036 32 1 6.6152 2.0297 -2.4119 33 1 7.6725 1.8805 -0.9879 34 1 6.0600 0.2951 3.1315 35 1 6.6783 -0.6436 1.7514 36 1 7.8139 0.1674 2.8563 37 1 5.9681 3.9703 0.8925 38 1 7.0501 4.7822 2.0495 39 1 7.7321 3.7851 0.7424 40 1 9.2236 3.8227 5.9775 41 1 4.5714 1.4261 3.2026 42 1 2.9749 1.4231 2.6791 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091580627.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:06 Heat of formation + Delta-G solvation = 59.882476 kcal Electronic energy + Delta-G solvation = -21518.927268 eV Core-core repulsion = 18534.831700 eV Total energy + Delta-G solvation = -2984.095567 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.26661 -38.59495 -36.42716 -34.98002 -34.42105 -32.83389 -31.95333 -29.61860 -28.75001 -27.12775 -25.84474 -25.72464 -22.64425 -22.57300 -20.71764 -20.58322 -19.00582 -17.86911 -17.18970 -16.81776 -16.42688 -16.07439 -15.68311 -15.37402 -15.15274 -14.79610 -14.59338 -14.43446 -14.27656 -13.88807 -13.49328 -13.34999 -13.16021 -12.99335 -12.89544 -12.59548 -12.40703 -12.28347 -12.15545 -12.01385 -11.82487 -11.73080 -11.53967 -11.38805 -11.16830 -10.75911 -9.85149 -9.26228 -8.29096 -7.96669 -6.32410 0.92827 1.29975 1.36024 1.45257 1.59477 1.96263 2.32122 3.00437 3.13556 3.24385 3.79886 3.96951 4.20454 4.26797 4.34465 4.47973 4.51053 4.53348 4.56416 4.64693 4.70936 4.74685 4.76657 4.84039 4.89240 4.96238 5.04849 5.08933 5.15937 5.21725 5.35967 5.38368 5.49644 5.57698 5.63249 5.89500 6.06315 6.32889 6.62032 6.74654 6.75908 7.00793 7.19873 7.33290 8.87001 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.021971 B = 0.006421 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.098483 B = 4359.894896 C = 5038.347974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.029 4.029 4 C 0.035 3.965 5 N -0.296 5.296 6 N -0.365 5.365 7 C 0.112 3.888 8 C 0.179 3.821 9 N -0.484 5.484 10 C 0.062 3.938 11 C 0.200 3.800 12 H 0.015 0.985 13 C -0.122 4.122 14 C -0.501 4.501 15 H 0.043 0.957 16 C 0.025 3.975 17 N -0.940 5.940 18 Si 0.924 3.076 19 H -0.264 1.264 20 H -0.288 1.288 21 H -0.248 1.248 22 C 0.025 3.975 23 N -0.872 5.872 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.026 0.974 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.027 0.973 38 H 0.043 0.957 39 H 0.049 0.951 40 H 0.266 0.734 41 H 0.389 0.611 42 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.255 -4.987 -9.207 18.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.148 4.148 3 C -0.068 4.068 4 C -0.132 4.132 5 N -0.122 5.122 6 N -0.152 5.152 7 C -0.029 4.029 8 C -0.044 4.044 9 N -0.207 5.207 10 C -0.086 4.086 11 C 0.093 3.907 12 H 0.032 0.968 13 C -0.181 4.181 14 C -0.540 4.540 15 H 0.061 0.939 16 C -0.173 4.173 17 N -0.580 5.580 18 Si 0.748 3.252 19 H -0.189 1.189 20 H -0.214 1.214 21 H -0.172 1.172 22 C -0.086 4.086 23 N -0.423 5.423 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.045 0.955 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.218 0.782 42 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -14.548 -4.919 -10.801 18.775 hybrid contribution -0.457 0.510 2.273 2.374 sum -15.006 -4.409 -8.528 17.814 Atomic orbital electron populations 1.21739 0.93795 1.02286 1.02508 1.21393 0.96883 0.94918 1.01608 1.20025 0.84539 0.98564 1.03684 1.22193 0.97553 1.04697 0.88776 1.77101 0.86328 1.26181 1.22586 1.48214 1.05251 1.58358 1.03396 1.21840 0.83643 1.03685 0.93761 1.18681 0.89761 1.10572 0.85388 1.58649 1.34709 1.04220 1.23141 1.22037 1.01448 0.89986 0.95082 1.19576 0.95051 0.85836 0.90192 0.96784 1.21815 0.98926 0.98217 0.99097 1.20959 0.99100 1.30921 1.02990 0.93858 1.25636 0.98540 0.96505 0.96629 1.70015 1.28689 1.44314 1.14973 0.86084 0.81003 0.78779 0.79297 1.18890 1.21405 1.17202 1.17980 0.91654 1.11694 0.87267 1.41819 1.09263 1.89950 1.01286 0.92092 0.91831 0.92129 0.92994 0.92543 0.89450 0.90046 0.90195 0.88737 0.89647 0.95508 0.92058 0.91540 0.95395 0.93840 0.93226 0.92441 0.78188 0.76767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 71.98 0.71 -1.38 16 2 C -0.11 -2.15 5.92 30.60 0.18 -1.97 16 3 C -0.03 -0.65 5.62 29.85 0.17 -0.48 16 4 C 0.04 1.10 6.47 43.10 0.28 1.38 16 5 N -0.30 -10.05 12.56 -47.26 -0.59 -10.64 16 6 N -0.36 -12.61 4.05 -365.31 -1.48 -14.09 16 7 C 0.11 3.08 11.44 127.77 1.46 4.54 16 8 C 0.18 6.71 4.33 131.04 0.57 7.28 16 9 N -0.48 -19.74 4.54 -705.41 -3.20 -22.95 16 10 C 0.06 2.39 8.81 127.69 1.12 3.51 16 11 C 0.20 9.08 1.38 44.17 0.06 9.14 16 12 H 0.01 0.66 3.50 -2.38 -0.01 0.65 16 13 C -0.12 -5.34 8.56 71.98 0.62 -4.73 16 14 C -0.50 -27.00 7.71 25.60 0.20 -26.80 16 15 H 0.04 2.62 7.79 -2.91 -0.02 2.60 16 16 C 0.03 1.40 5.47 84.66 0.46 1.87 16 17 N -0.94 -56.17 13.96 21.45 0.30 -55.87 16 18 Si 0.92 42.05 26.45 68.60 1.81 43.86 16 19 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 20 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 21 H -0.25 -10.78 6.10 99.48 0.61 -10.17 16 22 C 0.03 0.86 6.76 37.59 0.25 1.11 16 23 N -0.87 -26.55 8.65 -51.12 -0.44 -26.99 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.09 1.72 7.70 -2.39 -0.02 1.71 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.08 2.52 8.02 -2.39 -0.02 2.50 16 34 H 0.03 0.99 6.09 -2.39 -0.01 0.97 16 35 H 0.06 2.11 8.05 -2.39 -0.02 2.10 16 36 H 0.07 2.80 7.07 -2.39 -0.02 2.78 16 37 H 0.03 1.15 7.43 -2.38 -0.02 1.13 16 38 H 0.04 1.92 7.16 -2.39 -0.02 1.90 16 39 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 40 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 41 H 0.39 12.98 5.41 -92.70 -0.50 12.47 16 42 H 0.40 9.70 8.36 -92.70 -0.77 8.93 16 Total: -1.00 -64.17 331.07 2.13 -62.04 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: -0.35 Total: 31.17 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 6.09 Total: -6.54 kcal Atomic # 7 Polarization: -125.12 SS G_CDS: -5.42 Total: -130.54 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 1.81 Total: 43.86 kcal Total: -64.17 2.13 -62.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091580627.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.925 kcal (2) G-P(sol) polarization free energy of solvation -64.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds