Wall clock time and date at job start Mon Mar 30 2020 04:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46703 * 2 1 4 4 C 1.52995 * 109.47112 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46872 * 299.99824 * 4 3 2 6 6 C 1.53009 * 109.46987 * 180.02562 * 5 4 3 7 7 N 1.46900 * 109.46948 * 175.00109 * 6 5 4 8 8 C 1.46896 * 110.99954 * 170.00052 * 7 6 5 9 9 C 1.53233 * 109.34272 * 187.25300 * 8 7 6 10 10 N 1.47079 * 108.52065 * 306.17040 * 9 8 7 11 11 C 1.36937 * 120.88181 * 231.18552 * 10 9 8 12 12 H 1.08003 * 119.99949 * 153.44537 * 11 10 9 13 13 C 1.38808 * 119.99950 * 333.72880 * 11 10 9 14 14 N 1.31620 * 120.00264 * 159.04819 * 13 11 10 15 15 Si 1.86799 * 119.99769 * 339.04035 * 13 11 10 16 16 H 1.48497 * 109.47143 * 92.11599 * 15 13 11 17 17 H 1.48505 * 109.47027 * 212.10995 * 15 13 11 18 18 H 1.48502 * 109.47370 * 332.11164 * 15 13 11 19 19 C 1.47082 * 118.23885 * 51.45445 * 10 9 8 20 20 C 1.46903 * 110.99793 * 294.30109 * 7 6 5 21 21 C 1.52996 * 109.47355 * 60.00127 * 5 4 3 22 22 C 1.52994 * 109.47447 * 119.99747 * 2 1 3 23 23 H 1.09000 * 109.47211 * 60.00333 * 1 2 3 24 24 H 1.09009 * 109.46552 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47576 * 299.99856 * 1 2 3 26 26 H 1.08992 * 109.47214 * 240.00317 * 2 1 3 27 27 H 1.08998 * 109.46987 * 59.99783 * 3 2 1 28 28 H 1.09000 * 109.47015 * 299.99787 * 3 2 1 29 29 H 1.09001 * 109.47494 * 180.02562 * 4 3 2 30 30 H 1.08998 * 109.47558 * 59.99904 * 4 3 2 31 31 H 1.08998 * 109.47504 * 299.99706 * 5 4 3 32 32 H 1.08996 * 109.47084 * 54.99819 * 6 5 4 33 33 H 1.09004 * 109.46731 * 295.00076 * 6 5 4 34 34 H 1.09000 * 109.49240 * 67.28649 * 8 7 6 35 35 H 1.09005 * 109.49196 * 307.21486 * 8 7 6 36 36 H 1.08998 * 109.63465 * 186.45775 * 9 8 7 37 37 H 1.09002 * 109.63126 * 65.87577 * 9 8 7 38 38 H 0.96999 * 119.99883 * 179.97438 * 14 13 11 39 39 H 1.08996 * 109.62991 * 68.25381 * 19 10 9 40 40 H 1.08998 * 109.63134 * 188.83646 * 19 10 9 41 41 H 1.09004 * 109.49009 * 292.70338 * 20 7 6 42 42 H 1.08999 * 109.49270 * 52.78635 * 20 7 6 43 43 H 1.09005 * 109.47119 * 59.99786 * 21 5 4 44 44 H 1.09000 * 109.47262 * 180.02562 * 21 5 4 45 45 H 1.09005 * 109.47144 * 300.00303 * 22 2 1 46 46 H 1.09000 * 109.47254 * 59.99939 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 6 4.0804 0.7213 1.2483 6 6 5.6105 0.7220 1.2480 7 7 6.1006 0.1365 2.5030 8 6 7.5495 -0.0982 2.4439 9 6 7.9898 -0.8710 3.6916 10 7 7.5261 -0.1409 4.8812 11 6 8.3899 0.1661 5.8985 12 1 8.1989 1.0216 6.5294 13 6 9.5141 -0.6188 6.1151 14 7 10.5389 -0.1311 6.7816 15 14 9.5724 -2.3675 5.4606 16 1 10.1912 -2.3704 4.1108 17 1 10.3797 -3.2123 6.3770 18 1 8.1927 -2.9099 5.3739 19 6 6.1088 0.2456 4.9520 20 6 5.7438 0.9796 3.6519 21 6 3.5705 -0.7212 1.2484 22 6 2.0401 -0.7212 1.2492 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5137 -0.8899 27 1 1.6765 1.9564 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 3.9332 2.4704 -0.0002 30 1 3.9329 0.9290 -0.8908 31 1 3.7175 1.2350 2.1385 32 1 5.9733 1.7458 1.1586 33 1 5.9739 0.1329 0.4059 34 1 8.0715 0.8579 2.4050 35 1 7.7877 -0.6795 1.5531 36 1 9.0769 -0.9482 3.7100 37 1 7.5494 -1.8680 3.6793 38 1 11.3243 -0.6798 6.9333 39 1 5.4910 -0.6461 5.0584 40 1 5.9517 0.9071 5.8039 41 1 6.2911 1.9206 3.5963 42 1 4.6725 1.1799 3.6372 43 1 3.9336 -1.2349 0.3582 44 1 3.9339 -1.2350 2.1384 45 1 1.6767 -0.2073 2.1392 46 1 1.6768 -1.7488 1.2493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092936552.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:47 Heat of formation + Delta-G solvation = 3.648024 kcal Electronic energy + Delta-G solvation = -21440.819688 eV Core-core repulsion = 18557.825955 eV Total energy + Delta-G solvation = -2882.993733 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.38535 -37.88786 -34.91861 -32.77352 -31.32908 -30.77192 -30.33228 -28.19831 -26.02277 -23.69706 -23.09936 -22.72803 -21.99302 -20.43716 -19.77174 -19.22006 -16.79582 -15.57720 -15.50374 -14.71415 -14.47714 -14.38484 -14.29658 -14.15282 -14.01420 -13.72858 -13.17427 -13.00193 -12.59896 -12.43783 -12.17500 -12.06329 -11.87499 -11.55107 -11.50739 -11.29518 -11.11306 -10.97020 -10.78646 -10.63689 -10.29534 -10.25413 -10.08612 -10.00920 -9.98195 -9.68852 -9.41987 -8.60722 -7.89029 -6.91640 -5.91891 -3.26367 3.35160 3.51648 3.56748 4.23533 4.55102 4.56787 4.66617 4.70677 4.96175 5.02933 5.13785 5.24943 5.35732 5.38771 5.44835 5.45694 5.51709 5.53890 5.65102 5.69819 5.71382 5.79318 5.84898 5.85975 5.94388 5.98278 6.04287 6.07539 6.10792 6.13201 6.14438 6.22752 6.27968 6.33537 6.43659 6.52003 6.56827 6.63418 6.69956 6.93186 7.53261 7.55883 7.98251 8.35800 8.96915 9.75466 10.15562 11.24312 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.039396 B = 0.004143 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.552784 B = 6756.005673 C = 6846.980466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.111 4.111 4 C -0.114 4.114 5 C -0.082 4.082 6 C 0.059 3.941 7 N -0.532 5.532 8 C 0.044 3.956 9 C 0.131 3.869 10 N -0.609 5.609 11 C -0.258 4.258 12 H 0.085 0.915 13 C 0.021 3.979 14 N -0.911 5.911 15 Si 0.884 3.116 16 H -0.289 1.289 17 H -0.304 1.304 18 H -0.270 1.270 19 C 0.152 3.848 20 C 0.040 3.960 21 C -0.105 4.105 22 C -0.115 4.115 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.026 0.974 33 H 0.067 0.933 34 H 0.033 0.967 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.032 0.968 38 H 0.262 0.738 39 H 0.029 0.971 40 H 0.063 0.937 41 H 0.030 0.970 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.077 0.923 45 H 0.059 0.941 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.201 1.270 -15.067 22.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.149 4.149 4 C -0.152 4.152 5 C -0.101 4.101 6 C -0.070 4.070 7 N -0.256 5.256 8 C -0.085 4.085 9 C 0.005 3.995 10 N -0.333 5.333 11 C -0.386 4.386 12 H 0.103 0.897 13 C -0.178 4.178 14 N -0.554 5.554 15 Si 0.715 3.285 16 H -0.217 1.217 17 H -0.232 1.232 18 H -0.195 1.195 19 C 0.026 3.974 20 C -0.089 4.089 21 C -0.142 4.142 22 C -0.152 4.152 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.081 0.919 41 H 0.048 0.952 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.095 0.905 45 H 0.078 0.922 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.255 0.800 -14.892 22.807 hybrid contribution 0.622 -0.177 -0.489 0.811 sum -16.632 0.623 -15.381 22.663 Atomic orbital electron populations 1.21843 0.95701 1.01470 1.01478 1.21151 0.94966 0.96221 0.98781 1.21560 0.95549 0.96273 1.01500 1.21561 0.95334 1.00121 0.98187 1.21178 0.94381 0.96688 0.97857 1.22149 0.94740 0.97235 0.92830 1.61911 1.14210 1.47360 1.02134 1.22612 0.86979 0.99571 0.99386 1.21412 0.98496 0.94023 0.85569 1.44428 1.04699 1.66824 1.17369 1.18939 1.02270 1.08550 1.08853 0.89749 1.25257 0.96374 0.98146 0.97998 1.69844 1.04809 1.36287 1.44476 0.86936 0.77700 0.87010 0.76871 1.21655 1.23225 1.19471 1.21091 0.85533 0.96743 0.94011 1.22751 0.99206 0.94668 0.92276 1.21461 0.93947 0.96125 1.02669 1.21630 0.96413 0.99818 0.97361 0.93037 0.92879 0.92794 0.91523 0.92103 0.92433 0.92332 0.92161 0.91067 0.95533 0.91441 0.94838 0.91835 0.90875 0.95034 0.92822 0.95257 0.91859 0.95156 0.91426 0.92696 0.90451 0.92191 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.19 37.16 0.34 -0.79 16 2 C -0.09 -0.81 2.72 -90.62 -0.25 -1.06 16 3 C -0.11 -0.97 5.20 -26.73 -0.14 -1.11 16 4 C -0.11 -1.10 5.20 -26.73 -0.14 -1.24 16 5 C -0.08 -0.94 2.11 -90.62 -0.19 -1.13 16 6 C 0.06 0.79 4.35 -3.82 -0.02 0.77 16 7 N -0.53 -8.85 4.08 -234.02 -0.96 -9.81 16 8 C 0.04 0.82 5.62 -3.71 -0.02 0.80 16 9 C 0.13 2.96 4.35 -3.61 -0.02 2.95 16 10 N -0.61 -14.96 2.81 -171.74 -0.48 -15.45 16 11 C -0.26 -7.37 10.07 -15.06 -0.15 -7.53 16 12 H 0.08 2.56 8.06 -52.48 -0.42 2.14 16 13 C 0.02 0.61 5.23 -17.43 -0.09 0.52 16 14 N -0.91 -28.36 13.97 55.49 0.78 -27.58 16 15 Si 0.88 22.86 24.31 -169.99 -4.13 18.73 16 16 H -0.29 -7.16 6.59 56.52 0.37 -6.79 16 17 H -0.30 -7.97 7.11 56.52 0.40 -7.56 16 18 H -0.27 -6.92 6.63 56.52 0.37 -6.55 16 19 C 0.15 3.11 6.72 -3.36 -0.02 3.09 16 20 C 0.04 0.69 5.48 -3.46 -0.02 0.67 16 21 C -0.10 -1.20 5.09 -26.71 -0.14 -1.33 16 22 C -0.11 -1.13 5.21 -26.71 -0.14 -1.27 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.87 6.19 -51.93 -0.32 0.55 16 32 H 0.03 0.37 8.12 -51.93 -0.42 -0.06 16 33 H 0.07 0.87 7.97 -51.93 -0.41 0.46 16 34 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 1.05 7.99 -51.93 -0.41 0.63 16 36 H 0.07 1.79 4.61 -51.93 -0.24 1.55 16 37 H 0.03 0.73 6.96 -51.93 -0.36 0.36 16 38 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 1.27 7.95 -51.93 -0.41 0.85 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 1.00 6.07 -51.93 -0.32 0.69 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.08 1.05 7.75 -51.93 -0.40 0.65 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 336.04 15.07 5.06 5.06 Total: -1.00 -30.26 336.04 -9.56 -39.82 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -8.84 Total: -4.11 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -0.99 Total: -6.66 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.66 Total: -52.84 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.13 Total: 18.73 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.26 -9.56 -39.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936552.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.464 kcal (2) G-P(sol) polarization free energy of solvation -30.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds