Wall clock time and date at job start Mon Mar 30 2020 04:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46703 * 2 1 4 4 C 1.52995 * 109.47112 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46872 * 299.99824 * 4 3 2 6 6 C 1.53009 * 109.46987 * 180.02562 * 5 4 3 7 7 N 1.46900 * 109.46948 * 175.00109 * 6 5 4 8 8 C 1.46896 * 110.99954 * 170.00052 * 7 6 5 9 9 C 1.53233 * 109.34272 * 187.25300 * 8 7 6 10 10 N 1.47079 * 108.52065 * 306.17040 * 9 8 7 11 11 C 1.36937 * 120.88181 * 231.18552 * 10 9 8 12 12 H 1.08003 * 119.99949 * 153.44537 * 11 10 9 13 13 C 1.38808 * 119.99950 * 333.72880 * 11 10 9 14 14 N 1.31620 * 120.00264 * 159.04819 * 13 11 10 15 15 Si 1.86799 * 119.99769 * 339.04035 * 13 11 10 16 16 H 1.48497 * 109.47143 * 92.11599 * 15 13 11 17 17 H 1.48505 * 109.47027 * 212.10995 * 15 13 11 18 18 H 1.48502 * 109.47370 * 332.11164 * 15 13 11 19 19 C 1.47082 * 118.23885 * 51.45445 * 10 9 8 20 20 C 1.46903 * 110.99793 * 294.30109 * 7 6 5 21 21 C 1.52996 * 109.47355 * 60.00127 * 5 4 3 22 22 C 1.52994 * 109.47447 * 119.99747 * 2 1 3 23 23 H 1.09000 * 109.47211 * 60.00333 * 1 2 3 24 24 H 1.09009 * 109.46552 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47576 * 299.99856 * 1 2 3 26 26 H 1.08992 * 109.47214 * 240.00317 * 2 1 3 27 27 H 1.08998 * 109.46987 * 59.99783 * 3 2 1 28 28 H 1.09000 * 109.47015 * 299.99787 * 3 2 1 29 29 H 1.09001 * 109.47494 * 180.02562 * 4 3 2 30 30 H 1.08998 * 109.47558 * 59.99904 * 4 3 2 31 31 H 1.08998 * 109.47504 * 299.99706 * 5 4 3 32 32 H 1.08996 * 109.47084 * 54.99819 * 6 5 4 33 33 H 1.09004 * 109.46731 * 295.00076 * 6 5 4 34 34 H 1.09000 * 109.49240 * 67.28649 * 8 7 6 35 35 H 1.09005 * 109.49196 * 307.21486 * 8 7 6 36 36 H 1.08998 * 109.63465 * 186.45775 * 9 8 7 37 37 H 1.09002 * 109.63126 * 65.87577 * 9 8 7 38 38 H 0.96999 * 119.99883 * 179.97438 * 14 13 11 39 39 H 1.08996 * 109.62991 * 68.25381 * 19 10 9 40 40 H 1.08998 * 109.63134 * 188.83646 * 19 10 9 41 41 H 1.09004 * 109.49009 * 292.70338 * 20 7 6 42 42 H 1.08999 * 109.49270 * 52.78635 * 20 7 6 43 43 H 1.09005 * 109.47119 * 59.99786 * 21 5 4 44 44 H 1.09000 * 109.47262 * 180.02562 * 21 5 4 45 45 H 1.09005 * 109.47144 * 300.00303 * 22 2 1 46 46 H 1.09000 * 109.47254 * 59.99939 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 6 4.0804 0.7213 1.2483 6 6 5.6105 0.7220 1.2480 7 7 6.1006 0.1365 2.5030 8 6 7.5495 -0.0982 2.4439 9 6 7.9898 -0.8710 3.6916 10 7 7.5261 -0.1409 4.8812 11 6 8.3899 0.1661 5.8985 12 1 8.1989 1.0216 6.5294 13 6 9.5141 -0.6188 6.1151 14 7 10.5389 -0.1311 6.7816 15 14 9.5724 -2.3675 5.4606 16 1 10.1912 -2.3704 4.1108 17 1 10.3797 -3.2123 6.3770 18 1 8.1927 -2.9099 5.3739 19 6 6.1088 0.2456 4.9520 20 6 5.7438 0.9796 3.6519 21 6 3.5705 -0.7212 1.2484 22 6 2.0401 -0.7212 1.2492 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5137 -0.8899 27 1 1.6765 1.9564 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 3.9332 2.4704 -0.0002 30 1 3.9329 0.9290 -0.8908 31 1 3.7175 1.2350 2.1385 32 1 5.9733 1.7458 1.1586 33 1 5.9739 0.1329 0.4059 34 1 8.0715 0.8579 2.4050 35 1 7.7877 -0.6795 1.5531 36 1 9.0769 -0.9482 3.7100 37 1 7.5494 -1.8680 3.6793 38 1 11.3243 -0.6798 6.9333 39 1 5.4910 -0.6461 5.0584 40 1 5.9517 0.9071 5.8039 41 1 6.2911 1.9206 3.5963 42 1 4.6725 1.1799 3.6372 43 1 3.9336 -1.2349 0.3582 44 1 3.9339 -1.2350 2.1384 45 1 1.6767 -0.2073 2.1392 46 1 1.6768 -1.7488 1.2493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092936552.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:46 Heat of formation + Delta-G solvation = -14.238983 kcal Electronic energy + Delta-G solvation = -21441.595327 eV Core-core repulsion = 18557.825955 eV Total energy + Delta-G solvation = -2883.769372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.45220 -39.17555 -36.45098 -34.16733 -33.08494 -31.96714 -31.53092 -29.46854 -27.38307 -25.28763 -24.52142 -23.70159 -23.31661 -21.47291 -20.89539 -20.42776 -18.80778 -17.38308 -16.50816 -16.09840 -15.91291 -15.80958 -15.58170 -15.23908 -15.04117 -14.96839 -14.53162 -14.35964 -14.06839 -13.77013 -13.59729 -13.21814 -12.94634 -12.80124 -12.66172 -12.47331 -12.25952 -12.18833 -12.13079 -11.88817 -11.84183 -11.60056 -11.53627 -11.42196 -11.17217 -10.87929 -10.75661 -10.66771 -9.31474 -8.89687 -8.18761 -5.49975 1.28715 1.40593 1.50823 2.40245 2.90275 3.06020 3.35368 3.74714 3.89574 3.94642 4.10680 4.16577 4.21993 4.30987 4.40629 4.43683 4.51782 4.54836 4.61009 4.62583 4.71381 4.73935 4.75785 4.79177 4.83442 4.85478 4.93874 4.99485 5.01239 5.08903 5.12465 5.18884 5.27789 5.28646 5.34594 5.38081 5.50590 5.52277 5.65209 5.71311 5.81076 6.08157 6.15000 6.26501 6.87962 7.59304 8.02335 9.01289 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.039396 B = 0.004143 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.552784 B = 6756.005673 C = 6846.980466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.109 4.109 4 C -0.110 4.110 5 C -0.076 4.076 6 C 0.061 3.939 7 N -0.533 5.533 8 C 0.053 3.947 9 C 0.127 3.873 10 N -0.624 5.624 11 C -0.251 4.251 12 H 0.052 0.948 13 C -0.036 4.036 14 N -0.958 5.958 15 Si 0.950 3.050 16 H -0.271 1.271 17 H -0.309 1.309 18 H -0.265 1.265 19 C 0.147 3.853 20 C 0.053 3.947 21 C -0.100 4.100 22 C -0.112 4.112 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.026 0.974 33 H 0.078 0.922 34 H 0.020 0.980 35 H 0.092 0.908 36 H 0.052 0.948 37 H 0.035 0.965 38 H 0.262 0.738 39 H 0.036 0.964 40 H 0.059 0.941 41 H 0.016 0.984 42 H 0.097 0.903 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.166 0.650 -17.608 26.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.147 4.147 4 C -0.148 4.148 5 C -0.095 4.095 6 C -0.067 4.067 7 N -0.258 5.258 8 C -0.076 4.076 9 C 0.001 3.999 10 N -0.349 5.349 11 C -0.380 4.380 12 H 0.069 0.931 13 C -0.230 4.230 14 N -0.604 5.604 15 Si 0.779 3.221 16 H -0.198 1.198 17 H -0.238 1.238 18 H -0.190 1.190 19 C 0.022 3.978 20 C -0.076 4.076 21 C -0.138 4.138 22 C -0.150 4.150 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.097 0.903 34 H 0.038 0.962 35 H 0.110 0.890 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.035 0.965 42 H 0.115 0.885 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.264 0.183 -17.475 26.010 hybrid contribution 1.165 0.088 0.311 1.209 sum -18.099 0.271 -17.164 24.945 Atomic orbital electron populations 1.21823 0.94861 1.01784 1.01865 1.21129 0.95666 0.96022 0.98067 1.21549 0.94778 0.96354 1.01988 1.21521 0.95984 1.00018 0.97237 1.21127 0.92807 0.96926 0.98626 1.22233 0.96034 0.97117 0.91279 1.61902 1.12768 1.47752 1.03354 1.22426 0.88182 0.98720 0.98306 1.21434 0.97344 0.94563 0.86515 1.44574 1.05938 1.67210 1.17197 1.18891 1.02748 1.07263 1.09131 0.93059 1.25884 0.96108 1.01809 0.99225 1.69969 1.05653 1.37676 1.47106 0.85874 0.77723 0.81664 0.76888 1.19781 1.23796 1.18980 1.21263 0.83368 0.97211 0.95931 1.22570 1.00676 0.93396 0.90967 1.21393 0.95017 0.95754 1.01633 1.21599 0.95269 1.00177 0.97910 0.92188 0.92650 0.92896 0.91375 0.92356 0.91233 0.92051 0.91613 0.91766 0.95557 0.90334 0.96168 0.89009 0.92953 0.94755 0.92881 0.94589 0.92297 0.96525 0.88530 0.92482 0.92674 0.92598 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.19 71.98 0.66 -1.19 16 2 C -0.09 -1.32 2.72 -10.79 -0.03 -1.35 16 3 C -0.11 -1.58 5.20 30.59 0.16 -1.42 16 4 C -0.11 -1.78 5.20 30.59 0.16 -1.62 16 5 C -0.08 -1.53 2.11 -10.79 -0.02 -1.56 16 6 C 0.06 1.47 4.35 86.31 0.38 1.84 16 7 N -0.53 -16.58 4.08 -894.30 -3.65 -20.23 16 8 C 0.05 1.88 5.62 86.38 0.49 2.37 16 9 C 0.13 5.58 4.35 86.35 0.38 5.95 16 10 N -0.62 -30.65 2.81 -697.25 -1.96 -32.61 16 11 C -0.25 -14.70 10.07 84.03 0.85 -13.86 16 12 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 13 C -0.04 -2.13 5.23 84.86 0.44 -1.69 16 14 N -0.96 -61.35 13.97 21.65 0.30 -61.05 16 15 Si 0.95 47.78 24.31 68.60 1.67 49.44 16 16 H -0.27 -12.76 6.59 99.48 0.66 -12.11 16 17 H -0.31 -15.70 7.11 99.48 0.71 -14.99 16 18 H -0.27 -12.98 6.63 99.48 0.66 -12.32 16 19 C 0.15 5.93 6.72 86.50 0.58 6.51 16 20 C 0.05 1.74 5.48 86.54 0.47 2.22 16 21 C -0.10 -2.05 5.09 30.61 0.16 -1.90 16 22 C -0.11 -1.95 5.21 30.61 0.16 -1.79 16 23 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.40 6.19 -2.39 -0.01 1.38 16 32 H 0.03 0.65 8.12 -2.39 -0.02 0.63 16 33 H 0.08 1.76 7.97 -2.38 -0.02 1.74 16 34 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.09 2.74 7.99 -2.38 -0.02 2.72 16 36 H 0.05 2.51 4.61 -2.39 -0.01 2.50 16 37 H 0.03 1.51 6.96 -2.39 -0.02 1.49 16 38 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 39 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.06 2.37 7.95 -2.39 -0.02 2.36 16 41 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.10 2.63 6.07 -2.39 -0.01 2.62 16 43 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 44 H 0.05 1.38 7.75 -2.39 -0.02 1.36 16 45 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 46 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -65.68 336.04 1.99 -63.70 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 0.80 Total: 8.23 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: 4.83 Total: -7.48 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -5.31 Total: -113.89 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 1.67 Total: 49.44 kcal Total: -65.68 1.99 -63.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936552.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.457 kcal (2) G-P(sol) polarization free energy of solvation -65.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds