Wall clock time and date at job start Mon Mar 30 2020 04:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46791 * 2 1 4 4 N 1.46502 * 109.47274 * 180.02562 * 3 2 1 5 5 N 1.40060 * 126.07855 * 266.07816 * 4 3 2 6 6 C 1.30978 * 108.47267 * 179.69343 * 5 4 3 7 7 C 1.50697 * 125.77567 * 180.29075 * 6 5 4 8 8 C 1.39958 * 108.44738 * 0.43801 * 6 5 4 9 9 N 1.41386 * 126.09213 * 179.81888 * 8 6 5 10 10 C 1.36081 * 126.07842 * 86.04013 * 4 3 2 11 11 N 1.39700 * 126.28977 * 0.06676 * 10 4 3 12 12 C 1.46907 * 110.99799 * 10.80832 * 11 10 4 13 13 C 1.46899 * 111.00112 * 246.85797 * 11 10 4 14 14 H 1.09000 * 109.47178 * 307.14977 * 13 11 10 15 15 C 1.53004 * 109.47385 * 67.14849 * 13 11 10 16 16 C 1.50694 * 109.47339 * 187.15087 * 13 11 10 17 17 H 1.07999 * 120.00201 * 359.97438 * 16 13 11 18 18 C 1.37884 * 120.00304 * 179.97438 * 16 13 11 19 19 N 1.31516 * 119.99518 * 359.97438 * 18 16 13 20 20 Si 1.86795 * 120.00144 * 180.02562 * 18 16 13 21 21 H 1.48495 * 109.47283 * 59.99882 * 20 18 16 22 22 H 1.48497 * 109.46891 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47124 * 299.99813 * 20 18 16 24 24 H 1.08998 * 109.46655 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47069 * 299.99706 * 1 2 3 26 26 H 1.09001 * 109.47103 * 60.00468 * 1 2 3 27 27 H 1.09003 * 109.46896 * 240.00601 * 2 1 3 28 28 H 1.08993 * 109.47232 * 119.99780 * 2 1 3 29 29 H 1.09001 * 109.47462 * 60.00094 * 3 2 1 30 30 H 1.09006 * 109.47324 * 299.99889 * 3 2 1 31 31 H 1.09005 * 109.47115 * 270.17140 * 7 6 5 32 32 H 1.09004 * 109.47273 * 30.16948 * 7 6 5 33 33 H 1.08996 * 109.47004 * 150.17276 * 7 6 5 34 34 H 0.97003 * 119.99889 * 174.89001 * 9 8 6 35 35 H 0.96994 * 120.00596 * 354.61723 * 9 8 6 36 36 H 1.08998 * 109.47140 * 61.60768 * 12 11 10 37 37 H 1.09003 * 109.46525 * 181.60619 * 12 11 10 38 38 H 1.09005 * 109.46957 * 301.60380 * 12 11 10 39 39 H 1.09002 * 109.46679 * 66.42933 * 15 13 11 40 40 H 1.09002 * 109.47106 * 186.43464 * 15 13 11 41 41 H 1.08999 * 109.47006 * 306.43401 * 15 13 11 42 42 H 0.96998 * 119.99303 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4427 -0.0006 5 7 4.3303 1.5200 1.1284 6 6 5.5785 1.4864 0.7331 7 6 6.7884 1.5393 1.6299 8 6 5.5986 1.3965 -0.6635 9 7 6.7528 1.3403 -1.4780 10 6 4.3059 1.3669 -1.0982 11 7 3.8822 1.2765 -2.4263 12 6 2.4391 1.5279 -2.5367 13 6 4.2351 -0.0273 -3.0038 14 1 5.2992 -0.2132 -2.8582 15 6 3.4261 -1.1270 -2.3130 16 6 3.9228 -0.0248 -4.4780 17 1 3.5037 0.8569 -4.9398 18 6 4.1722 -1.1483 -5.2375 19 7 4.6830 -2.2219 -4.6754 20 14 3.7858 -1.1449 -7.0651 21 1 4.5710 -0.0774 -7.7351 22 1 4.1424 -2.4630 -7.6488 23 1 2.3361 -0.8920 -7.2640 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 7.0842 2.5776 1.7802 32 1 6.5475 1.0872 2.5921 33 1 7.6086 0.9913 1.1662 34 1 6.6654 1.2041 -2.4344 35 1 7.6320 1.4418 -1.0811 36 1 2.2189 2.5384 -2.1924 37 1 2.1307 1.4232 -3.5770 38 1 1.8969 0.8086 -1.9228 39 1 2.3698 -1.0063 -2.5534 40 1 3.7686 -2.1021 -2.6594 41 1 3.5636 -1.0559 -1.2341 42 1 4.8581 -3.0124 -5.2096 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097126164.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:04 Heat of formation + Delta-G solvation = 109.775858 kcal Electronic energy + Delta-G solvation = -21989.264340 eV Core-core repulsion = 19007.332312 eV Total energy + Delta-G solvation = -2981.932028 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.93152 -37.26785 -35.38833 -33.06195 -32.87015 -31.28663 -29.17907 -28.59070 -27.23662 -25.44922 -24.97116 -24.33931 -21.68933 -20.63105 -19.23674 -19.11819 -16.50141 -16.23745 -15.53397 -15.46645 -14.72149 -14.63024 -14.42101 -13.96963 -13.42699 -13.30810 -12.98718 -12.85848 -12.41969 -12.23752 -12.17155 -11.83377 -11.73179 -11.46404 -11.36019 -11.06508 -10.87975 -10.84381 -10.70444 -10.41518 -10.18948 -10.02212 -9.84710 -9.73017 -9.03371 -8.68966 -8.45648 -7.59092 -6.15302 -6.07041 -4.16650 2.50924 3.03828 3.26301 3.31584 3.33885 3.59677 4.32625 4.72754 4.77633 5.05047 5.08349 5.21521 5.27847 5.39123 5.53777 5.59335 5.65594 5.80748 5.82272 5.88639 5.94062 6.03215 6.08208 6.14443 6.21714 6.38332 6.51852 6.55975 6.68239 6.71702 6.96371 7.02541 7.17101 7.51609 7.58014 7.78559 7.97777 8.15613 8.36312 8.42575 8.63270 8.81463 8.87964 9.48603 10.95684 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.017992 B = 0.007453 C = 0.005869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.907042 B = 3755.905665 C = 4770.065862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.167 4.167 3 C 0.112 3.888 4 N -0.384 5.384 5 N -0.303 5.303 6 C 0.035 3.965 7 C -0.061 4.061 8 C 0.043 3.957 9 N -0.874 5.874 10 C 0.213 3.787 11 N -0.450 5.450 12 C -0.001 4.001 13 C 0.215 3.785 14 H 0.052 0.948 15 C -0.168 4.168 16 C -0.511 4.511 17 H 0.064 0.936 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.899 3.101 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.278 1.278 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.401 0.599 35 H 0.385 0.615 36 H 0.052 0.948 37 H 0.085 0.915 38 H 0.053 0.947 39 H 0.034 0.966 40 H 0.087 0.913 41 H 0.015 0.985 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.474 5.184 8.217 10.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.205 4.205 3 C -0.009 4.009 4 N -0.175 5.175 5 N -0.129 5.129 6 C -0.132 4.132 7 C -0.120 4.120 8 C -0.067 4.067 9 N -0.423 5.423 10 C -0.010 4.010 11 N -0.170 5.170 12 C -0.148 4.148 13 C 0.110 3.890 14 H 0.070 0.930 15 C -0.227 4.227 16 C -0.549 4.549 17 H 0.082 0.918 18 C -0.139 4.139 19 N -0.527 5.527 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.115 0.885 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.132 0.868 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.231 0.769 35 H 0.212 0.788 36 H 0.070 0.930 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.105 0.895 41 H 0.034 0.966 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.166 5.427 8.897 10.892 hybrid contribution 0.114 -0.772 -1.502 1.693 sum -3.051 4.655 7.395 9.255 Atomic orbital electron populations 1.21673 0.94886 1.02108 1.01698 1.22454 0.96340 0.96936 1.04766 1.22440 0.75308 0.98312 1.04830 1.48415 1.05076 1.60816 1.03155 1.77042 1.00208 1.27559 1.08092 1.21639 0.93777 1.05686 0.92096 1.19981 0.92582 1.01892 0.97569 1.16755 0.86462 1.13939 0.89562 1.41572 1.03150 1.88667 1.08916 1.19374 0.89753 1.07087 0.84770 1.60081 1.14874 1.34525 1.07533 1.23148 0.88754 0.98803 1.04136 1.19531 0.96508 0.79586 0.93339 0.92993 1.22548 0.99292 1.04934 0.95925 1.21013 1.42849 0.99069 0.91999 0.91804 1.24903 0.95005 0.95367 0.98633 1.69898 1.43618 1.03325 1.35888 0.86549 0.78753 0.77162 0.84882 1.20144 1.21344 1.20329 0.92264 0.92828 0.92374 0.88495 0.91590 0.90228 0.86828 0.91478 0.91509 0.91262 0.76909 0.78821 0.92954 0.89628 0.92868 0.94739 0.89459 0.96613 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 37.16 0.37 -1.34 16 2 C -0.17 -2.52 5.19 -26.73 -0.14 -2.66 16 3 C 0.11 1.75 5.50 -4.04 -0.02 1.73 16 4 N -0.38 -7.31 3.65 -60.04 -0.22 -7.53 16 5 N -0.30 -5.87 12.56 33.71 0.42 -5.45 16 6 C 0.03 0.64 7.21 -82.31 -0.59 0.05 16 7 C -0.06 -0.83 10.28 36.00 0.37 -0.46 16 8 C 0.04 0.85 6.97 -83.46 -0.58 0.27 16 9 N -0.87 -15.52 8.94 32.49 0.29 -15.23 16 10 C 0.21 4.40 5.17 -152.09 -0.79 3.61 16 11 N -0.45 -9.61 4.83 -174.31 -0.84 -10.45 16 12 C 0.00 -0.03 6.90 60.07 0.41 0.39 16 13 C 0.22 5.17 2.21 -68.87 -0.15 5.02 16 14 H 0.05 1.38 6.30 -51.93 -0.33 1.05 16 15 C -0.17 -3.95 6.94 37.16 0.26 -3.69 16 16 C -0.51 -13.19 7.87 -34.44 -0.27 -13.46 16 17 H 0.06 1.64 6.93 -52.49 -0.36 1.28 16 18 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 19 N -0.89 -24.29 11.40 55.43 0.63 -23.66 16 20 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.10 1.71 2.81 -51.93 -0.15 1.56 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.11 1.66 3.82 -51.93 -0.20 1.47 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.83 7.76 -51.93 -0.40 0.43 16 34 H 0.40 7.72 7.64 -40.82 -0.31 7.41 16 35 H 0.39 5.60 8.42 -40.82 -0.34 5.26 16 36 H 0.05 0.87 6.77 -51.93 -0.35 0.51 16 37 H 0.09 1.66 6.52 -51.93 -0.34 1.32 16 38 H 0.05 0.93 2.41 -51.93 -0.13 0.81 16 39 H 0.03 0.77 6.04 -51.93 -0.31 0.46 16 40 H 0.09 2.28 6.27 -51.93 -0.33 1.96 16 41 H 0.02 0.35 5.95 -51.93 -0.31 0.04 16 42 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 314.61 15.07 4.74 4.74 Total: -1.00 -29.00 314.61 -7.17 -36.17 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -5.95 Total: 14.94 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -1.23 Total: -8.99 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: 0.28 Total: -62.32 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.00 -7.17 -36.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097126164.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.946 kcal (2) G-P(sol) polarization free energy of solvation -28.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds