Wall clock time and date at job start Mon Mar 30 2020 04:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46496 * 119.99832 * 2 1 4 4 C 1.50700 * 109.47006 * 269.99911 * 3 2 1 5 5 H 1.08001 * 120.00098 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99903 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99639 * 179.97438 * 6 4 3 8 8 Si 1.86794 * 120.00175 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.47111 * 89.99829 * 8 6 4 10 10 H 1.48495 * 109.47267 * 210.00043 * 8 6 4 11 11 H 1.48497 * 109.46996 * 330.00362 * 8 6 4 12 12 C 1.34776 * 119.99788 * 179.97438 * 2 1 3 13 13 O 1.21281 * 119.99796 * 180.02562 * 12 2 1 14 14 C 1.50699 * 120.00078 * 359.97438 * 12 2 1 15 15 N 1.46901 * 109.46833 * 186.05921 * 14 12 2 16 16 C 1.48644 * 110.99656 * 176.48499 * 15 14 12 17 17 C 1.54626 * 104.64483 * 201.42569 * 16 15 14 18 18 C 1.53354 * 104.67110 * 23.71126 * 17 16 15 19 19 C 1.52793 * 115.65717 * 129.27726 * 18 17 16 20 20 C 1.53960 * 86.78201 * 92.78778 * 19 18 17 21 21 C 1.52800 * 115.63308 * 230.21532 * 18 17 16 22 22 C 1.48790 * 111.00153 * 60.86316 * 15 14 12 23 23 H 1.09003 * 109.46835 * 270.00142 * 1 2 3 24 24 H 1.08998 * 109.47463 * 30.00122 * 1 2 3 25 25 H 1.09002 * 109.47092 * 150.00129 * 1 2 3 26 26 H 1.09000 * 109.47418 * 30.00106 * 3 2 1 27 27 H 1.08998 * 109.47047 * 150.00297 * 3 2 1 28 28 H 0.97002 * 119.99634 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47142 * 66.06592 * 14 12 2 30 30 H 1.08991 * 109.47517 * 306.06188 * 14 12 2 31 31 H 1.09000 * 110.40222 * 82.63796 * 16 15 14 32 32 H 1.08995 * 110.40374 * 320.21518 * 16 15 14 33 33 H 1.09000 * 110.39855 * 264.91540 * 17 16 15 34 34 H 1.08997 * 110.49749 * 142.55767 * 17 16 15 35 35 H 1.09000 * 113.66511 * 338.31610 * 19 18 17 36 36 H 1.08999 * 113.66401 * 207.25856 * 19 18 17 37 37 H 1.08996 * 113.58756 * 139.28785 * 20 19 18 38 38 H 1.09000 * 113.58241 * 270.09918 * 20 19 18 39 39 H 1.09002 * 113.66676 * 152.71874 * 21 18 17 40 40 H 1.08997 * 113.66227 * 21.66273 * 21 18 17 41 41 H 1.09001 * 110.45945 * 39.52932 * 22 15 14 42 42 H 1.09003 * 110.45919 * 276.96248 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.3465 3.2568 -2.9127 8 14 3.7338 3.9288 -0.2530 9 1 5.1069 3.5069 0.1237 10 1 3.7497 5.3554 -0.6649 11 1 2.8273 3.7596 0.9109 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3853 -2.4723 0.0017 15 7 2.3333 -3.5849 0.1483 16 6 1.6187 -4.8851 0.2383 17 6 2.6261 -5.8384 0.9220 18 6 3.5699 -4.9131 1.6998 19 6 3.7851 -5.2716 3.1694 20 6 5.0101 -6.0793 2.7031 21 6 5.0624 -5.1515 1.4756 22 6 3.0800 -3.4837 1.4313 23 1 -0.3633 0.0000 1.0277 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 3.8233 4.0827 -3.0900 29 1 0.8423 -2.5791 -0.9373 30 1 0.6801 -2.4840 0.8326 31 1 1.3663 -5.2498 -0.7574 32 1 0.7196 -4.7833 0.8459 33 1 3.1808 -6.4049 0.1741 34 1 2.1098 -6.5143 1.6036 35 1 2.9900 -5.8867 3.5907 36 1 4.0379 -4.4162 3.7959 37 1 5.8734 -5.9812 3.3611 38 1 4.7807 -7.1160 2.4566 39 1 5.6748 -4.2622 1.6252 40 1 5.2874 -5.6706 0.5440 41 1 2.4190 -3.1508 2.2315 42 1 3.9260 -2.8043 1.3272 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123669152.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:36 Heat of formation + Delta-G solvation = 0.535042 kcal Electronic energy + Delta-G solvation = -20883.970655 eV Core-core repulsion = 17865.008838 eV Total energy + Delta-G solvation = -3018.961816 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.40760 -38.91349 -36.26384 -34.79723 -32.54061 -30.97169 -28.76964 -28.12401 -26.26257 -25.79713 -25.32914 -22.33755 -22.03770 -21.05208 -18.45266 -18.34500 -16.93745 -16.35998 -16.00799 -15.59126 -15.18192 -15.02939 -14.75754 -13.99195 -13.94060 -13.55646 -12.98090 -12.74523 -12.60595 -12.38300 -12.16023 -12.05069 -12.01535 -11.88216 -11.71599 -11.43724 -11.12048 -10.93608 -10.86106 -10.50650 -10.46272 -10.19844 -10.11524 -10.07372 -9.50904 -8.93746 -8.56591 -8.28075 -7.65777 -6.06188 -4.04700 3.30483 3.36337 3.38120 3.38892 3.67612 4.16662 4.41523 4.41815 4.52662 4.62233 4.77730 4.91304 5.04747 5.17407 5.26903 5.32927 5.38516 5.42032 5.51934 5.61058 5.63981 5.70887 5.73112 5.75960 5.82556 5.83880 5.88544 6.00374 6.07050 6.15475 6.19728 6.30389 6.50084 6.68605 6.92070 6.96917 7.06679 7.38109 7.63663 8.28187 8.50070 8.96722 9.04934 9.54147 11.07368 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026928 B = 0.004533 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.541305 B = 6175.279783 C = 6654.574418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.601 5.601 3 C 0.217 3.783 4 C -0.528 4.528 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.507 3.493 13 O -0.523 6.523 14 C 0.028 3.972 15 N -0.490 5.490 16 C 0.031 3.969 17 C -0.099 4.099 18 C -0.086 4.086 19 C -0.129 4.129 20 C -0.142 4.142 21 C -0.121 4.121 22 C 0.047 3.953 23 H 0.043 0.957 24 H 0.076 0.924 25 H 0.058 0.942 26 H 0.029 0.971 27 H 0.036 0.964 28 H 0.264 0.736 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.037 0.963 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.000 -17.576 11.586 21.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.334 5.334 3 C 0.097 3.903 4 C -0.566 4.566 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.293 3.707 13 O -0.398 6.398 14 C -0.103 4.103 15 N -0.214 5.214 16 C -0.097 4.097 17 C -0.137 4.137 18 C -0.087 4.087 19 C -0.167 4.167 20 C -0.179 4.179 21 C -0.158 4.158 22 C -0.080 4.080 23 H 0.062 0.938 24 H 0.095 0.905 25 H 0.077 0.923 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.055 0.945 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.923 -17.366 11.000 20.928 hybrid contribution -0.464 0.771 1.149 1.459 sum -4.387 -16.595 12.148 21.029 Atomic orbital electron populations 1.21645 0.81111 1.02977 1.00264 1.47843 1.06173 1.07085 1.72342 1.19634 0.92382 0.79988 0.98333 1.21344 1.36890 1.07101 0.91308 0.90765 1.24862 0.95250 0.97362 0.95554 1.69902 1.41525 1.23563 1.18651 0.86843 0.80121 0.79736 0.82930 1.19906 1.21079 1.19136 1.20143 0.88233 0.84680 0.77637 1.90644 1.13629 1.86797 1.48753 1.22235 0.94505 0.91003 1.02604 1.65259 1.21882 1.00176 1.34042 1.23207 0.95494 0.90411 1.00562 1.22041 0.96295 0.96702 0.98618 1.21924 0.95970 0.95291 0.95508 1.22881 0.98298 1.00012 0.95527 1.22878 0.98213 0.98531 0.98297 1.22840 0.95241 0.99694 0.98039 1.23135 0.99346 0.96329 0.89199 0.93837 0.90495 0.92301 0.95340 0.94637 0.92588 0.88135 0.92741 0.90071 0.94083 0.90734 0.91307 0.91672 0.90044 0.91691 0.90491 0.89766 0.91300 0.94509 0.87949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.13 59.85 0.61 1.90 16 2 N -0.60 -12.59 2.86 -182.96 -0.52 -13.11 16 3 C 0.22 5.40 4.23 -5.20 -0.02 5.38 16 4 C -0.53 -15.45 9.94 -34.44 -0.34 -15.79 16 5 H 0.07 2.39 8.06 -52.49 -0.42 1.96 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 8 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 9 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 12 C 0.51 10.57 7.32 -10.99 -0.08 10.49 16 13 O -0.52 -13.05 14.01 5.56 0.08 -12.97 16 14 C 0.03 0.44 3.85 -4.98 -0.02 0.42 16 15 N -0.49 -7.55 5.19 -231.57 -1.20 -8.75 16 16 C 0.03 0.36 6.52 -2.00 -0.01 0.35 16 17 C -0.10 -1.02 6.35 -25.69 -0.16 -1.18 16 18 C -0.09 -1.01 1.17 -154.30 -0.18 -1.19 16 19 C -0.13 -1.28 7.34 -26.34 -0.19 -1.47 16 20 C -0.14 -1.31 7.94 -25.74 -0.20 -1.52 16 21 C -0.12 -1.39 7.31 -26.33 -0.19 -1.58 16 22 C 0.05 0.71 4.97 -2.53 -0.01 0.69 16 23 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 25 H 0.06 0.75 6.61 -51.93 -0.34 0.41 16 26 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 27 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 28 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 29 H 0.10 1.44 7.71 -51.93 -0.40 1.04 16 30 H 0.05 0.71 7.77 -51.93 -0.40 0.31 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.04 0.42 7.91 -51.93 -0.41 0.01 16 33 H 0.07 0.75 7.77 -51.93 -0.40 0.35 16 34 H 0.07 0.59 7.77 -51.93 -0.40 0.19 16 35 H 0.06 0.57 7.88 -51.93 -0.41 0.16 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.08 1.05 7.97 -51.93 -0.41 0.64 16 40 H 0.07 0.79 7.88 -51.93 -0.41 0.38 16 41 H 0.04 0.53 7.93 -51.93 -0.41 0.12 16 42 H 0.10 1.86 6.27 -51.93 -0.33 1.53 16 LS Contribution 329.37 15.07 4.96 4.96 Total: -1.00 -34.16 329.37 -8.68 -42.83 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -7.18 Total: -1.37 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -0.92 Total: -1.46 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: -0.95 Total: -49.16 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.08 Total: -12.97 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.16 -8.68 -42.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123669152.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.370 kcal (2) G-P(sol) polarization free energy of solvation -34.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds