Wall clock time and date at job start Mon Mar 30 2020 04:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46496 * 119.99832 * 2 1 4 4 C 1.50700 * 109.47006 * 269.99911 * 3 2 1 5 5 H 1.08001 * 120.00098 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99903 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99639 * 179.97438 * 6 4 3 8 8 Si 1.86794 * 120.00175 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.47111 * 89.99829 * 8 6 4 10 10 H 1.48495 * 109.47267 * 210.00043 * 8 6 4 11 11 H 1.48497 * 109.46996 * 330.00362 * 8 6 4 12 12 C 1.34776 * 119.99788 * 179.97438 * 2 1 3 13 13 O 1.21281 * 119.99796 * 180.02562 * 12 2 1 14 14 C 1.50699 * 120.00078 * 359.97438 * 12 2 1 15 15 N 1.46901 * 109.46833 * 186.05921 * 14 12 2 16 16 C 1.48644 * 110.99656 * 176.48499 * 15 14 12 17 17 C 1.54626 * 104.64483 * 201.42569 * 16 15 14 18 18 C 1.53354 * 104.67110 * 23.71126 * 17 16 15 19 19 C 1.52793 * 115.65717 * 129.27726 * 18 17 16 20 20 C 1.53960 * 86.78201 * 92.78778 * 19 18 17 21 21 C 1.52800 * 115.63308 * 230.21532 * 18 17 16 22 22 C 1.48790 * 111.00153 * 60.86316 * 15 14 12 23 23 H 1.09003 * 109.46835 * 270.00142 * 1 2 3 24 24 H 1.08998 * 109.47463 * 30.00122 * 1 2 3 25 25 H 1.09002 * 109.47092 * 150.00129 * 1 2 3 26 26 H 1.09000 * 109.47418 * 30.00106 * 3 2 1 27 27 H 1.08998 * 109.47047 * 150.00297 * 3 2 1 28 28 H 0.97002 * 119.99634 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47142 * 66.06592 * 14 12 2 30 30 H 1.08991 * 109.47517 * 306.06188 * 14 12 2 31 31 H 1.09000 * 110.40222 * 82.63796 * 16 15 14 32 32 H 1.08995 * 110.40374 * 320.21518 * 16 15 14 33 33 H 1.09000 * 110.39855 * 264.91540 * 17 16 15 34 34 H 1.08997 * 110.49749 * 142.55767 * 17 16 15 35 35 H 1.09000 * 113.66511 * 338.31610 * 19 18 17 36 36 H 1.08999 * 113.66401 * 207.25856 * 19 18 17 37 37 H 1.08996 * 113.58756 * 139.28785 * 20 19 18 38 38 H 1.09000 * 113.58241 * 270.09918 * 20 19 18 39 39 H 1.09002 * 113.66676 * 152.71874 * 21 18 17 40 40 H 1.08997 * 113.66227 * 21.66273 * 21 18 17 41 41 H 1.09001 * 110.45945 * 39.52932 * 22 15 14 42 42 H 1.09003 * 110.45919 * 276.96248 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.3465 3.2568 -2.9127 8 14 3.7338 3.9288 -0.2530 9 1 5.1069 3.5069 0.1237 10 1 3.7497 5.3554 -0.6649 11 1 2.8273 3.7596 0.9109 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3853 -2.4723 0.0017 15 7 2.3333 -3.5849 0.1483 16 6 1.6187 -4.8851 0.2383 17 6 2.6261 -5.8384 0.9220 18 6 3.5699 -4.9131 1.6998 19 6 3.7851 -5.2716 3.1694 20 6 5.0101 -6.0793 2.7031 21 6 5.0624 -5.1515 1.4756 22 6 3.0800 -3.4837 1.4313 23 1 -0.3633 0.0000 1.0277 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 3.8233 4.0827 -3.0900 29 1 0.8423 -2.5791 -0.9373 30 1 0.6801 -2.4840 0.8326 31 1 1.3663 -5.2498 -0.7574 32 1 0.7196 -4.7833 0.8459 33 1 3.1808 -6.4049 0.1741 34 1 2.1098 -6.5143 1.6036 35 1 2.9900 -5.8867 3.5907 36 1 4.0379 -4.4162 3.7959 37 1 5.8734 -5.9812 3.3611 38 1 4.7807 -7.1160 2.4566 39 1 5.6748 -4.2622 1.6252 40 1 5.2874 -5.6706 0.5440 41 1 2.4190 -3.1508 2.2315 42 1 3.9260 -2.8043 1.3272 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123669152.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:35 Heat of formation + Delta-G solvation = -23.856866 kcal Electronic energy + Delta-G solvation = -20885.028367 eV Core-core repulsion = 17865.008838 eV Total energy + Delta-G solvation = -3020.019529 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.44783 -40.37383 -37.37152 -36.49386 -34.71660 -32.15025 -30.48740 -29.24042 -27.55169 -26.84544 -26.60887 -24.13110 -22.89028 -22.21994 -19.97214 -19.32205 -19.15423 -17.80316 -17.30557 -16.85776 -16.50328 -16.36908 -15.86970 -15.57319 -15.24026 -14.72776 -14.56455 -14.05115 -13.98167 -13.84827 -13.64831 -13.27326 -13.19952 -13.08165 -12.86586 -12.72878 -12.55446 -12.41673 -12.26825 -11.99304 -11.75873 -11.73296 -11.29973 -11.04238 -10.96675 -10.84795 -10.56929 -9.45350 -9.31109 -8.35488 -6.40671 1.30651 1.35342 1.43645 1.80164 2.23882 2.29665 2.98816 3.05727 3.49875 3.62896 3.67863 3.81735 3.97019 4.05679 4.23691 4.29456 4.32518 4.44999 4.50984 4.60532 4.64189 4.67594 4.79699 4.86032 4.87515 4.92226 4.92793 4.95500 5.02544 5.08896 5.10532 5.17448 5.24632 5.43359 5.44536 5.60011 5.61450 5.88684 6.00444 6.23758 6.60668 6.71216 7.20460 7.45436 8.81805 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026928 B = 0.004533 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.541305 B = 6175.279783 C = 6654.574418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.611 5.611 3 C 0.226 3.774 4 C -0.537 4.537 5 H 0.026 0.974 6 C 0.010 3.990 7 N -0.946 5.946 8 Si 0.950 3.050 9 H -0.278 1.278 10 H -0.273 1.273 11 H -0.237 1.237 12 C 0.494 3.506 13 O -0.577 6.577 14 C 0.042 3.958 15 N -0.522 5.522 16 C 0.032 3.968 17 C -0.093 4.093 18 C -0.089 4.089 19 C -0.123 4.123 20 C -0.127 4.127 21 C -0.134 4.134 22 C 0.051 3.949 23 H 0.079 0.921 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.051 0.949 27 H 0.016 0.984 28 H 0.269 0.731 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.040 0.960 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.907 -19.196 14.019 24.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.343 5.343 3 C 0.103 3.897 4 C -0.576 4.576 5 H 0.045 0.955 6 C -0.188 4.188 7 N -0.586 5.586 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.198 1.198 11 H -0.161 1.161 12 C 0.283 3.717 13 O -0.457 6.457 14 C -0.089 4.089 15 N -0.246 5.246 16 C -0.095 4.095 17 C -0.131 4.131 18 C -0.089 4.089 19 C -0.161 4.161 20 C -0.165 4.165 21 C -0.172 4.172 22 C -0.077 4.077 23 H 0.097 0.903 24 H 0.085 0.915 25 H 0.107 0.893 26 H 0.068 0.932 27 H 0.034 0.966 28 H 0.078 0.922 29 H 0.134 0.866 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.115 0.885 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.058 0.942 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.894 -19.012 13.441 24.018 hybrid contribution 0.124 1.244 0.274 1.280 sum -5.770 -17.768 13.715 23.175 Atomic orbital electron populations 1.21965 0.77600 1.04034 1.02866 1.47983 1.08459 1.05864 1.72018 1.19292 0.92624 0.82555 0.95200 1.21578 1.36837 1.06726 0.92436 0.95529 1.25877 0.95241 0.98966 0.98683 1.70057 1.42716 1.24515 1.21333 0.85687 0.79481 0.77778 0.79813 1.20346 1.19789 1.16056 1.21220 0.88044 0.86347 0.76125 1.90621 1.16263 1.87744 1.51034 1.22156 0.94160 0.87951 1.04659 1.65190 1.23127 1.01714 1.34619 1.23310 0.96152 0.88337 1.01692 1.22062 0.95752 0.96412 0.98830 1.22017 0.95919 0.93718 0.97286 1.22850 0.99086 1.00050 0.94068 1.22835 0.98255 0.98781 0.96600 1.22871 0.95368 0.99635 0.99278 1.22972 0.97954 0.97519 0.89261 0.90267 0.91503 0.89331 0.93152 0.96630 0.92241 0.86619 0.89295 0.89298 0.91971 0.90699 0.88533 0.89556 0.90844 0.91123 0.88645 0.92084 0.91718 0.94195 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.20 10.13 127.77 1.29 3.50 16 2 N -0.61 -25.36 2.86 -851.14 -2.43 -27.79 16 3 C 0.23 11.30 4.23 85.63 0.36 11.66 16 4 C -0.54 -32.54 9.94 25.60 0.25 -32.28 16 5 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 6 C 0.01 0.62 5.47 84.66 0.46 1.08 16 7 N -0.95 -61.12 13.96 21.45 0.30 -60.82 16 8 Si 0.95 45.42 27.47 68.60 1.88 47.30 16 9 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.24 -10.15 6.54 99.48 0.65 -9.50 16 12 C 0.49 20.78 7.32 87.66 0.64 21.42 16 13 O -0.58 -30.25 14.01 -3.03 -0.04 -30.29 16 14 C 0.04 1.22 3.85 85.56 0.33 1.55 16 15 N -0.52 -15.57 5.19 -886.54 -4.60 -20.17 16 16 C 0.03 0.64 6.52 86.52 0.56 1.21 16 17 C -0.09 -1.64 6.35 31.27 0.20 -1.44 16 18 C -0.09 -1.97 1.17 -52.05 -0.06 -2.03 16 19 C -0.12 -2.15 7.34 30.85 0.23 -1.92 16 20 C -0.13 -2.10 7.94 31.24 0.25 -1.85 16 21 C -0.13 -3.10 7.31 30.85 0.23 -2.88 16 22 C 0.05 1.51 4.97 86.09 0.43 1.94 16 23 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 25 H 0.09 1.98 6.61 -2.39 -0.02 1.96 16 26 H 0.05 2.30 7.13 -2.39 -0.02 2.28 16 27 H 0.02 0.84 6.85 -2.39 -0.02 0.83 16 28 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 29 H 0.12 3.03 7.71 -2.39 -0.02 3.01 16 30 H 0.09 1.99 7.77 -2.39 -0.02 1.97 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 1.00 7.91 -2.39 -0.02 0.98 16 33 H 0.07 1.32 7.77 -2.39 -0.02 1.30 16 34 H 0.10 1.20 7.77 -2.39 -0.02 1.18 16 35 H 0.09 1.17 7.88 -2.39 -0.02 1.15 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.06 1.66 7.97 -2.39 -0.02 1.64 16 40 H 0.06 1.50 7.88 -2.39 -0.02 1.48 16 41 H 0.04 1.12 7.93 -2.39 -0.02 1.10 16 42 H 0.06 2.19 6.27 -2.39 -0.01 2.18 16 Total: -1.00 -79.76 329.37 1.21 -78.55 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.92 Total: 13.26 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 5.17 Total: -0.04 kcal Atomic # 7 Polarization: -102.04 SS G_CDS: -6.73 Total: -108.77 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.04 Total: -30.29 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.30 kcal Total: -79.76 1.21 -78.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123669152.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.693 kcal (2) G-P(sol) polarization free energy of solvation -79.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds