Wall clock time and date at job start Mon Mar 30 2020 04:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46491 * 120.00339 * 2 1 4 4 C 1.50698 * 109.47259 * 270.00560 * 3 2 1 5 5 H 1.08004 * 120.00281 * 359.97438 * 4 3 2 6 6 C 1.37882 * 120.00183 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00107 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 119.99840 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.47242 * 90.00020 * 8 6 4 10 10 H 1.48501 * 109.46898 * 210.00191 * 8 6 4 11 11 H 1.48501 * 109.47011 * 329.99890 * 8 6 4 12 12 C 1.34776 * 119.99600 * 180.02562 * 2 1 3 13 13 O 1.21280 * 120.00026 * 179.97438 * 12 2 1 14 14 C 1.50710 * 120.00087 * 359.97438 * 12 2 1 15 15 N 1.46894 * 109.46753 * 180.02562 * 14 12 2 16 16 C 1.48533 * 111.00383 * 305.40131 * 15 14 12 17 17 C 1.54319 * 104.67377 * 200.80931 * 16 15 14 18 18 H 1.09002 * 111.82469 * 262.43047 * 17 16 15 19 19 C 1.54165 * 109.64759 * 137.84319 * 17 16 15 20 20 C 1.53979 * 104.74039 * 224.56750 * 19 17 16 21 21 C 1.54849 * 103.14394 * 37.01898 * 20 19 17 22 22 C 1.54161 * 104.32469 * 322.50348 * 21 20 19 23 23 H 1.09003 * 112.51320 * 260.85847 * 22 21 20 24 24 C 1.48542 * 110.99739 * 189.99838 * 15 14 12 25 25 H 1.09005 * 109.47026 * 270.00160 * 1 2 3 26 26 H 1.09004 * 109.46718 * 29.99901 * 1 2 3 27 27 H 1.09000 * 109.47662 * 149.99901 * 1 2 3 28 28 H 1.09001 * 109.46964 * 30.00100 * 3 2 1 29 29 H 1.08998 * 109.47476 * 149.99978 * 3 2 1 30 30 H 0.96997 * 120.00267 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47166 * 60.00031 * 14 12 2 32 32 H 1.08996 * 109.46974 * 300.00180 * 14 12 2 33 33 H 1.08997 * 110.39241 * 82.01139 * 16 15 14 34 34 H 1.08998 * 110.39803 * 319.60898 * 16 15 14 35 35 H 1.09002 * 110.46243 * 342.01753 * 19 17 16 36 36 H 1.08996 * 110.46533 * 104.60339 * 19 17 16 37 37 H 1.08997 * 109.97705 * 278.84957 * 20 19 17 38 38 H 1.08998 * 111.15370 * 155.74293 * 20 19 17 39 39 H 1.08998 * 110.46528 * 203.79151 * 21 20 19 40 40 H 1.09004 * 110.46260 * 81.21527 * 21 20 19 41 41 H 1.08999 * 110.39269 * 40.39634 * 24 15 14 42 42 H 1.08999 * 110.49317 * 278.04457 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0980 1.0958 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.3465 3.2569 -2.9127 8 14 3.7341 3.9285 -0.2529 9 1 5.1072 3.5066 0.1237 10 1 3.7501 5.3552 -0.6647 11 1 2.8276 3.7595 0.9111 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1673 -0.0010 14 6 1.3852 -2.4724 -0.0005 15 7 2.3398 -3.5889 -0.0005 16 6 3.2963 -3.4715 -1.1308 17 6 3.8458 -4.9001 -1.3278 18 1 4.8073 -5.0363 -0.8326 19 6 3.9268 -5.2212 -2.8334 20 6 3.3550 -6.6451 -2.9616 21 6 2.2096 -6.6597 -1.9196 22 6 2.7564 -5.8314 -0.7401 23 1 3.1462 -6.4562 0.0635 24 6 1.6476 -4.8809 -0.2413 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5138 28 1 1.6085 2.0283 0.5139 29 1 3.1500 1.1383 0.5138 30 1 3.8234 4.0827 -3.0899 31 1 0.7582 -2.5299 -0.8903 32 1 0.7589 -2.5302 0.8896 33 1 4.1040 -2.7857 -0.8752 34 1 2.7816 -3.1351 -2.0307 35 1 3.3040 -4.5323 -3.4041 36 1 4.9600 -5.1767 -3.1776 37 1 4.1198 -7.3781 -2.7051 38 1 2.9673 -6.8245 -3.9644 39 1 1.9963 -7.6803 -1.6020 40 1 1.3145 -6.1927 -2.3307 41 1 0.8773 -4.7629 -1.0033 42 1 1.2114 -5.2583 0.6836 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148090330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:55 Heat of formation + Delta-G solvation = -26.527931 kcal Electronic energy + Delta-G solvation = -20989.230826 eV Core-core repulsion = 17969.095471 eV Total energy + Delta-G solvation = -3020.135355 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.16040 -38.73907 -35.45362 -34.69161 -32.55105 -30.46863 -30.29195 -28.49867 -26.27877 -25.61635 -25.29065 -22.32325 -21.21978 -20.54455 -19.24559 -18.31462 -16.95694 -16.65917 -16.12789 -15.68371 -15.24715 -14.79265 -14.41674 -14.27003 -13.86549 -13.65720 -12.96545 -12.70141 -12.39077 -12.37956 -12.11887 -12.03864 -11.96424 -11.49250 -11.42445 -11.19598 -11.02431 -10.90923 -10.73519 -10.67874 -10.50426 -10.46981 -10.37114 -10.13031 -9.54231 -8.88471 -8.58765 -8.21705 -7.68070 -6.08832 -4.07576 3.29838 3.35741 3.36504 3.38010 3.68660 4.22363 4.39954 4.42314 4.53187 4.71220 5.03465 5.16391 5.20599 5.24957 5.34251 5.39937 5.42004 5.47339 5.50014 5.59573 5.63062 5.65161 5.74140 5.79884 5.85921 5.92168 5.97405 6.09442 6.13445 6.14928 6.27567 6.40006 6.56822 6.69713 6.93422 7.02155 7.11784 7.36946 7.61389 8.26348 8.47274 8.92944 9.02320 9.51708 11.04592 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027549 B = 0.004639 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.134251 B = 6034.709089 C = 6525.905995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.600 5.600 3 C 0.216 3.784 4 C -0.528 4.528 5 H 0.073 0.927 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.507 3.493 13 O -0.526 6.526 14 C 0.027 3.973 15 N -0.495 5.495 16 C 0.037 3.963 17 C -0.094 4.094 18 H 0.083 0.917 19 C -0.121 4.121 20 C -0.124 4.124 21 C -0.119 4.119 22 C -0.093 4.093 23 H 0.084 0.916 24 C 0.035 3.965 25 H 0.046 0.954 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.029 0.971 29 H 0.037 0.963 30 H 0.264 0.736 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.039 0.961 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.043 0.957 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.765 -17.902 3.940 19.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.332 5.332 3 C 0.096 3.904 4 C -0.567 4.567 5 H 0.091 0.909 6 C -0.130 4.130 7 N -0.537 5.537 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.293 3.707 13 O -0.402 6.402 14 C -0.104 4.104 15 N -0.219 5.219 16 C -0.090 4.090 17 C -0.113 4.113 18 H 0.102 0.898 19 C -0.159 4.159 20 C -0.161 4.161 21 C -0.156 4.156 22 C -0.112 4.112 23 H 0.103 0.897 24 C -0.093 4.093 25 H 0.064 0.936 26 H 0.095 0.905 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.129 0.871 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.062 0.938 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.784 -17.687 4.362 18.835 hybrid contribution -0.329 0.777 -0.237 0.877 sum -5.113 -16.910 4.124 18.141 Atomic orbital electron populations 1.21664 0.81052 1.02888 1.00471 1.47829 1.06202 1.07068 1.72140 1.19648 0.92486 0.79989 0.98294 1.21324 1.36964 1.07137 0.91259 0.90914 1.24857 0.95209 0.97347 0.95583 1.69896 1.41515 1.23589 1.18682 0.86837 0.80168 0.79696 0.82913 1.19869 1.21085 1.19064 1.20161 0.88194 0.84808 0.77500 1.90605 1.13723 1.86688 1.49181 1.22247 0.95064 0.90831 1.02300 1.65284 1.13524 1.00237 1.42836 1.23484 0.97567 0.96558 0.91430 1.22550 0.98739 0.94773 0.95231 0.89828 1.22331 1.01163 0.96668 0.95745 1.22351 0.97669 0.97308 0.98788 1.22487 0.98148 0.99677 0.95329 1.22502 0.95226 0.96092 0.97344 0.89728 1.23333 0.95595 0.90389 0.99981 0.93569 0.90542 0.92377 0.95272 0.94507 0.92568 0.92323 0.88469 0.87065 0.94221 0.91632 0.91437 0.91739 0.91709 0.91803 0.91573 0.93850 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 10.24 59.85 0.61 1.89 16 2 N -0.60 -12.50 2.86 -182.95 -0.52 -13.02 16 3 C 0.22 5.36 4.23 -5.20 -0.02 5.34 16 4 C -0.53 -15.28 9.94 -34.44 -0.34 -15.62 16 5 H 0.07 2.31 8.06 -52.48 -0.42 1.88 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 7 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 8 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 9 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 12 C 0.51 10.51 7.39 -10.98 -0.08 10.43 16 13 O -0.53 -12.94 13.24 5.56 0.07 -12.87 16 14 C 0.03 0.42 4.10 -4.97 -0.02 0.40 16 15 N -0.50 -7.70 5.33 -231.53 -1.23 -8.93 16 16 C 0.04 0.61 4.87 -2.23 -0.01 0.60 16 17 C -0.09 -1.21 3.89 -88.32 -0.34 -1.56 16 18 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 19 C -0.12 -1.39 6.34 -25.61 -0.16 -1.56 16 20 C -0.12 -1.16 6.86 -25.25 -0.17 -1.34 16 21 C -0.12 -1.10 6.38 -25.15 -0.16 -1.26 16 22 C -0.09 -1.02 3.93 -88.32 -0.35 -1.37 16 23 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 24 C 0.04 0.42 6.03 -2.22 -0.01 0.40 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 27 H 0.06 0.74 6.44 -51.93 -0.33 0.41 16 28 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 29 H 0.04 0.98 6.85 -51.93 -0.36 0.62 16 30 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 31 H 0.06 0.84 7.14 -51.93 -0.37 0.47 16 32 H 0.10 1.28 8.11 -51.93 -0.42 0.86 16 33 H 0.11 2.23 6.04 -51.93 -0.31 1.92 16 34 H 0.04 0.69 7.11 -51.93 -0.37 0.32 16 35 H 0.06 0.82 7.25 -51.93 -0.38 0.44 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.62 7.18 -51.93 -0.37 0.25 16 41 H 0.04 0.49 6.86 -51.93 -0.36 0.13 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 322.95 15.07 4.87 4.87 Total: -1.00 -33.35 322.95 -8.91 -42.26 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -7.03 Total: -0.70 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -1.16 Total: -1.62 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -0.98 Total: -49.01 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.07 Total: -12.87 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.35 -8.91 -42.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148090330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.729 kcal (2) G-P(sol) polarization free energy of solvation -33.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds