Wall clock time and date at job start Mon Mar 30 2020 04:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46491 * 120.00339 * 2 1 4 4 C 1.50698 * 109.47259 * 270.00560 * 3 2 1 5 5 H 1.08004 * 120.00281 * 359.97438 * 4 3 2 6 6 C 1.37882 * 120.00183 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00107 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 119.99840 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.47242 * 90.00020 * 8 6 4 10 10 H 1.48501 * 109.46898 * 210.00191 * 8 6 4 11 11 H 1.48501 * 109.47011 * 329.99890 * 8 6 4 12 12 C 1.34776 * 119.99600 * 180.02562 * 2 1 3 13 13 O 1.21280 * 120.00026 * 179.97438 * 12 2 1 14 14 C 1.50710 * 120.00087 * 359.97438 * 12 2 1 15 15 N 1.46894 * 109.46753 * 180.02562 * 14 12 2 16 16 C 1.48533 * 111.00383 * 305.40131 * 15 14 12 17 17 C 1.54319 * 104.67377 * 200.80931 * 16 15 14 18 18 H 1.09002 * 111.82469 * 262.43047 * 17 16 15 19 19 C 1.54165 * 109.64759 * 137.84319 * 17 16 15 20 20 C 1.53979 * 104.74039 * 224.56750 * 19 17 16 21 21 C 1.54849 * 103.14394 * 37.01898 * 20 19 17 22 22 C 1.54161 * 104.32469 * 322.50348 * 21 20 19 23 23 H 1.09003 * 112.51320 * 260.85847 * 22 21 20 24 24 C 1.48542 * 110.99739 * 189.99838 * 15 14 12 25 25 H 1.09005 * 109.47026 * 270.00160 * 1 2 3 26 26 H 1.09004 * 109.46718 * 29.99901 * 1 2 3 27 27 H 1.09000 * 109.47662 * 149.99901 * 1 2 3 28 28 H 1.09001 * 109.46964 * 30.00100 * 3 2 1 29 29 H 1.08998 * 109.47476 * 149.99978 * 3 2 1 30 30 H 0.96997 * 120.00267 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47166 * 60.00031 * 14 12 2 32 32 H 1.08996 * 109.46974 * 300.00180 * 14 12 2 33 33 H 1.08997 * 110.39241 * 82.01139 * 16 15 14 34 34 H 1.08998 * 110.39803 * 319.60898 * 16 15 14 35 35 H 1.09002 * 110.46243 * 342.01753 * 19 17 16 36 36 H 1.08996 * 110.46533 * 104.60339 * 19 17 16 37 37 H 1.08997 * 109.97705 * 278.84957 * 20 19 17 38 38 H 1.08998 * 111.15370 * 155.74293 * 20 19 17 39 39 H 1.08998 * 110.46528 * 203.79151 * 21 20 19 40 40 H 1.09004 * 110.46260 * 81.21527 * 21 20 19 41 41 H 1.08999 * 110.39269 * 40.39634 * 24 15 14 42 42 H 1.08999 * 110.49317 * 278.04457 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0980 1.0958 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.3465 3.2569 -2.9127 8 14 3.7341 3.9285 -0.2529 9 1 5.1072 3.5066 0.1237 10 1 3.7501 5.3552 -0.6647 11 1 2.8276 3.7595 0.9111 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1673 -0.0010 14 6 1.3852 -2.4724 -0.0005 15 7 2.3398 -3.5889 -0.0005 16 6 3.2963 -3.4715 -1.1308 17 6 3.8458 -4.9001 -1.3278 18 1 4.8073 -5.0363 -0.8326 19 6 3.9268 -5.2212 -2.8334 20 6 3.3550 -6.6451 -2.9616 21 6 2.2096 -6.6597 -1.9196 22 6 2.7564 -5.8314 -0.7401 23 1 3.1462 -6.4562 0.0635 24 6 1.6476 -4.8809 -0.2413 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5138 28 1 1.6085 2.0283 0.5139 29 1 3.1500 1.1383 0.5138 30 1 3.8234 4.0827 -3.0899 31 1 0.7582 -2.5299 -0.8903 32 1 0.7589 -2.5302 0.8896 33 1 4.1040 -2.7857 -0.8752 34 1 2.7816 -3.1351 -2.0307 35 1 3.3040 -4.5323 -3.4041 36 1 4.9600 -5.1767 -3.1776 37 1 4.1198 -7.3781 -2.7051 38 1 2.9673 -6.8245 -3.9644 39 1 1.9963 -7.6803 -1.6020 40 1 1.3145 -6.1927 -2.3307 41 1 0.8773 -4.7629 -1.0033 42 1 1.2114 -5.2583 0.6836 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000148090330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:55 Heat of formation + Delta-G solvation = -50.319001 kcal Electronic energy + Delta-G solvation = -20990.262485 eV Core-core repulsion = 17969.095471 eV Total energy + Delta-G solvation = -3021.167013 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.36829 -40.14660 -36.83760 -36.12685 -34.72180 -31.64763 -31.42550 -30.19231 -27.58225 -26.86608 -26.52639 -24.15942 -22.35326 -21.50369 -20.32895 -19.79359 -19.16855 -17.92889 -17.36794 -17.17424 -16.75299 -16.09162 -15.95229 -15.37614 -15.26233 -14.91778 -14.54799 -14.09001 -14.02012 -13.65874 -13.63756 -13.29813 -13.22847 -13.03431 -12.86029 -12.53024 -12.45546 -12.04363 -12.00071 -11.87369 -11.77192 -11.65910 -11.54475 -11.44710 -11.41139 -10.85449 -10.48500 -9.45821 -9.36791 -8.36520 -6.41754 1.31050 1.35494 1.43884 1.77832 2.22361 2.29248 2.98097 3.05917 3.46053 3.56693 3.73997 3.78832 4.16778 4.19638 4.30393 4.37905 4.42502 4.47956 4.51635 4.54558 4.60813 4.65180 4.78034 4.79833 4.84341 4.93340 4.94123 4.94871 4.98451 5.12198 5.16415 5.25167 5.31293 5.43424 5.43709 5.50174 5.61405 5.81297 5.96232 6.22225 6.59010 6.69243 7.19513 7.43296 8.80592 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027549 B = 0.004639 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.134251 B = 6034.709089 C = 6525.905995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.609 5.609 3 C 0.225 3.775 4 C -0.536 4.536 5 H 0.025 0.975 6 C 0.011 3.989 7 N -0.946 5.946 8 Si 0.949 3.051 9 H -0.277 1.277 10 H -0.273 1.273 11 H -0.238 1.238 12 C 0.493 3.507 13 O -0.577 6.577 14 C 0.040 3.960 15 N -0.512 5.512 16 C 0.041 3.959 17 C -0.094 4.094 18 H 0.078 0.922 19 C -0.123 4.123 20 C -0.118 4.118 21 C -0.113 4.113 22 C -0.088 4.088 23 H 0.097 0.903 24 C 0.036 3.964 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.051 0.949 29 H 0.017 0.983 30 H 0.269 0.731 31 H 0.075 0.925 32 H 0.133 0.867 33 H 0.064 0.936 34 H 0.020 0.980 35 H 0.049 0.951 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.627 -19.662 5.848 21.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.341 5.341 3 C 0.102 3.898 4 C -0.575 4.575 5 H 0.044 0.956 6 C -0.187 4.187 7 N -0.586 5.586 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.198 1.198 11 H -0.161 1.161 12 C 0.282 3.718 13 O -0.457 6.457 14 C -0.091 4.091 15 N -0.236 5.236 16 C -0.086 4.086 17 C -0.113 4.113 18 H 0.096 0.904 19 C -0.161 4.161 20 C -0.155 4.155 21 C -0.150 4.150 22 C -0.107 4.107 23 H 0.115 0.885 24 C -0.091 4.091 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.105 0.895 28 H 0.069 0.931 29 H 0.035 0.965 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.151 0.849 33 H 0.082 0.918 34 H 0.039 0.961 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.712 -19.473 6.277 21.532 hybrid contribution 0.250 1.301 -0.913 1.608 sum -6.462 -18.172 5.365 20.019 Atomic orbital electron populations 1.21981 0.77566 1.03876 1.03097 1.47968 1.08473 1.05852 1.71856 1.19309 0.92703 0.82516 0.95230 1.21547 1.36860 1.06726 0.92340 0.95616 1.25860 0.95217 0.98936 0.98653 1.70048 1.42711 1.24525 1.21318 0.85695 0.79525 0.77765 0.79838 1.20311 1.19840 1.16063 1.21203 0.88038 0.86430 0.76130 1.90596 1.16208 1.87601 1.51282 1.22229 0.94546 0.87797 1.04568 1.65267 1.14193 1.01781 1.42354 1.23239 0.96633 0.97811 0.90963 1.22541 0.99212 0.93109 0.96475 0.90384 1.22325 1.01096 0.98197 0.94496 1.22342 0.98020 0.95532 0.99633 1.22471 0.97766 1.00562 0.94222 1.22543 0.94062 0.95782 0.98283 0.88518 1.23466 0.95788 0.88347 1.01482 0.89925 0.91550 0.89544 0.93111 0.96513 0.92234 0.90717 0.84937 0.91764 0.96137 0.93243 0.91515 0.90575 0.90689 0.89497 0.91553 0.92854 0.88300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.18 10.24 127.77 1.31 3.49 16 2 N -0.61 -25.22 2.86 -851.13 -2.43 -27.65 16 3 C 0.22 11.21 4.23 85.63 0.36 11.57 16 4 C -0.54 -32.19 9.94 25.60 0.25 -31.93 16 5 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 6 C 0.01 0.68 5.47 84.66 0.46 1.14 16 7 N -0.95 -60.66 13.96 21.45 0.30 -60.36 16 8 Si 0.95 45.21 27.47 68.60 1.88 47.10 16 9 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 12 C 0.49 20.67 7.39 87.66 0.65 21.31 16 13 O -0.58 -29.87 13.24 -3.03 -0.04 -29.91 16 14 C 0.04 1.16 4.10 85.56 0.35 1.51 16 15 N -0.51 -15.45 5.33 -886.43 -4.73 -20.17 16 16 C 0.04 1.43 4.87 86.43 0.42 1.85 16 17 C -0.09 -2.44 3.89 -9.30 -0.04 -2.48 16 18 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 19 C -0.12 -2.83 6.34 31.32 0.20 -2.63 16 20 C -0.12 -1.95 6.86 31.56 0.22 -1.74 16 21 C -0.11 -1.73 6.38 31.62 0.20 -1.53 16 22 C -0.09 -1.72 3.93 -9.30 -0.04 -1.76 16 23 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 24 C 0.04 0.76 6.03 86.43 0.52 1.28 16 25 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 26 H 0.07 2.02 8.07 -2.38 -0.02 2.00 16 27 H 0.09 1.95 6.44 -2.39 -0.02 1.93 16 28 H 0.05 2.31 7.13 -2.39 -0.02 2.29 16 29 H 0.02 0.90 6.85 -2.39 -0.02 0.89 16 30 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 31 H 0.08 1.97 7.14 -2.38 -0.02 1.95 16 32 H 0.13 2.97 8.11 -2.39 -0.02 2.95 16 33 H 0.06 2.82 6.04 -2.39 -0.01 2.80 16 34 H 0.02 0.76 7.11 -2.39 -0.02 0.74 16 35 H 0.05 1.28 7.25 -2.39 -0.02 1.26 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 1.04 7.18 -2.39 -0.02 1.02 16 41 H 0.05 1.03 6.86 -2.39 -0.02 1.01 16 42 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -77.98 322.95 0.79 -77.19 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.93 Total: 13.72 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 4.87 Total: 0.08 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -6.86 Total: -108.18 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.04 Total: -29.91 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.88 Total: 47.10 kcal Total: -77.98 0.79 -77.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148090330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.872 kcal (2) G-P(sol) polarization free energy of solvation -77.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds