Wall clock time and date at job start Mon Mar 30 2020 04:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46491 * 120.00453 * 2 1 4 4 C 1.50702 * 109.46957 * 90.00133 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72213 * 4 3 2 7 7 N 1.31514 * 119.99985 * 180.27663 * 6 4 3 8 8 Si 1.86800 * 119.99777 * 0.28166 * 6 4 3 9 9 H 1.48498 * 109.47109 * 89.99834 * 8 6 4 10 10 H 1.48507 * 109.46754 * 209.99574 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99405 * 8 6 4 12 12 C 1.34780 * 119.99526 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99673 * 179.97438 * 12 2 1 14 14 C 1.50700 * 120.00400 * 359.97438 * 12 2 1 15 15 N 1.46894 * 109.47448 * 180.02562 * 14 12 2 16 16 C 1.49883 * 110.99851 * 289.56154 * 15 14 12 17 17 C 1.50016 * 104.44784 * 244.75346 * 16 15 14 18 18 H 1.09001 * 108.33192 * 78.09651 * 17 16 15 19 19 C 1.49872 * 127.30145 * 211.01944 * 17 16 15 20 20 C 1.55964 * 104.00407 * 148.81610 * 19 17 16 21 21 C 1.56307 * 105.76593 * 352.93604 * 20 19 17 22 22 C 1.51630 * 101.80500 * 334.48338 * 21 20 19 23 23 H 1.08993 * 111.33970 * 287.41218 * 22 21 20 24 24 C 1.50137 * 111.00304 * 170.00261 * 15 14 12 25 25 H 1.09000 * 109.47583 * 89.99529 * 1 2 3 26 26 H 1.09005 * 109.47610 * 210.00002 * 1 2 3 27 27 H 1.09006 * 109.46979 * 329.99538 * 1 2 3 28 28 H 1.09004 * 109.47166 * 330.00399 * 3 2 1 29 29 H 1.08994 * 109.47507 * 210.00106 * 3 2 1 30 30 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 31 31 H 1.08995 * 109.47359 * 300.00599 * 14 12 2 32 32 H 1.09008 * 109.46888 * 59.99948 * 14 12 2 33 33 H 1.08994 * 110.44188 * 3.49806 * 16 15 14 34 34 H 1.09004 * 110.43867 * 126.01553 * 16 15 14 35 35 H 1.08990 * 110.52392 * 30.18016 * 19 17 16 36 36 H 1.09005 * 110.63693 * 267.49942 * 19 17 16 37 37 H 1.09003 * 110.18649 * 233.86930 * 20 19 17 38 38 H 1.08995 * 110.19278 * 112.01256 * 20 19 17 39 39 H 1.08996 * 110.96600 * 216.35363 * 21 20 19 40 40 H 1.09005 * 110.99138 * 92.62188 * 21 20 19 41 41 H 1.08997 * 110.86934 * 266.33773 * 24 15 14 42 42 H 1.08997 * 110.86181 * 29.80153 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7036 1.4208 5 1 2.0982 1.0956 2.2418 6 6 3.1316 2.8746 1.6728 7 7 3.3556 3.2514 2.9128 8 14 3.7385 3.9259 0.2530 9 1 2.6895 4.9090 -0.1187 10 1 4.9703 4.6473 0.6625 11 1 4.0384 3.0571 -0.9134 12 6 2.1388 -1.1673 -0.0005 13 8 3.3516 -1.1673 -0.0010 14 6 1.3852 -2.4724 -0.0005 15 7 2.3397 -3.5890 -0.0005 16 6 3.0448 -3.6928 -1.3190 17 6 2.5992 -5.0112 -1.8790 18 1 1.5960 -4.8887 -2.2874 19 6 3.3780 -5.9284 -2.7726 20 6 2.8692 -7.3517 -2.3881 21 6 1.9421 -7.1502 -1.1459 22 6 2.4909 -5.8664 -0.5543 23 1 3.4576 -6.0304 -0.0784 24 6 1.6402 -4.8949 0.2428 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6084 2.0283 -0.5138 29 1 3.1499 1.1383 -0.5138 30 1 3.8357 4.0754 3.0900 31 1 0.7589 -2.5303 0.8896 32 1 0.7582 -2.5299 -0.8903 33 1 2.7431 -2.8781 -1.9773 34 1 4.1252 -3.6863 -1.1745 35 1 4.4460 -5.8381 -2.5752 36 1 3.1647 -5.7165 -3.8203 37 1 3.7104 -7.9947 -2.1293 38 1 2.3037 -7.7847 -3.2132 39 1 2.0448 -7.9779 -0.4442 40 1 0.9028 -7.0262 -1.4503 41 1 1.6503 -5.1492 1.3026 42 1 0.6192 -4.8652 -0.1378 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148090523.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:57 Heat of formation + Delta-G solvation = -10.650804 kcal Electronic energy + Delta-G solvation = -20772.160463 eV Core-core repulsion = 17752.713591 eV Total energy + Delta-G solvation = -3019.446871 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.51723 -38.79388 -35.58184 -34.69645 -32.51068 -30.44277 -30.32651 -28.42721 -26.31012 -26.12761 -25.25497 -22.38745 -21.08999 -20.44310 -19.84223 -18.26919 -16.93405 -16.64623 -16.11325 -15.61212 -14.98959 -14.88580 -14.65222 -14.53714 -13.84553 -13.39113 -13.11446 -12.83345 -12.55111 -12.39651 -12.23079 -12.14725 -11.88970 -11.57271 -11.53340 -11.42832 -11.32824 -10.95644 -10.85330 -10.84618 -10.55279 -10.47505 -10.10715 -10.05757 -9.49671 -8.93880 -8.55531 -8.17492 -7.63462 -6.04727 -4.03062 3.29317 3.37207 3.41631 3.42584 3.61673 3.87794 4.17240 4.43229 4.49345 4.66952 4.93147 4.98347 5.08725 5.15604 5.22868 5.29429 5.36563 5.40274 5.44920 5.52048 5.54326 5.57427 5.62582 5.69463 5.80935 5.83400 5.86060 5.92207 6.03154 6.14011 6.16848 6.19295 6.37181 6.67277 6.87234 6.96624 7.07310 7.40997 7.65710 8.31610 8.51923 8.98627 9.09193 9.55765 11.08854 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.036942 B = 0.004009 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.755423 B = 6983.006861 C = 7181.906071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.217 3.783 4 C -0.527 4.527 5 H 0.074 0.926 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.264 1.264 12 C 0.507 3.493 13 O -0.520 6.520 14 C 0.032 3.968 15 N -0.505 5.505 16 C 0.069 3.931 17 C -0.135 4.135 18 H 0.062 0.938 19 C -0.102 4.102 20 C -0.122 4.122 21 C -0.107 4.107 22 C -0.116 4.116 23 H 0.092 0.908 24 C 0.052 3.948 25 H 0.043 0.957 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.024 0.976 29 H 0.040 0.960 30 H 0.264 0.736 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.083 0.917 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.835 -19.103 -11.097 23.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.097 3.903 4 C -0.566 4.566 5 H 0.092 0.908 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.702 3.298 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.189 1.189 12 C 0.293 3.707 13 O -0.395 6.395 14 C -0.099 4.099 15 N -0.229 5.229 16 C -0.058 4.058 17 C -0.154 4.154 18 H 0.081 0.919 19 C -0.141 4.141 20 C -0.159 4.159 21 C -0.145 4.145 22 C -0.135 4.135 23 H 0.110 0.890 24 C -0.075 4.075 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.737 -18.806 -10.572 22.323 hybrid contribution -0.481 0.680 -1.131 1.405 sum -6.218 -18.126 -11.703 22.454 Atomic orbital electron populations 1.21642 0.81222 1.02929 1.00219 1.47843 1.06103 1.07111 1.72582 1.19628 0.92455 0.79955 0.98299 1.21356 1.36679 1.07199 0.91341 0.90775 1.24868 0.95250 0.97408 0.95563 1.69901 1.41456 1.23668 1.18658 0.86853 0.78864 0.80744 0.83307 1.20159 1.20948 1.18872 1.20165 0.88272 0.84610 0.77685 1.90668 1.13606 1.86823 1.48440 1.22198 0.94470 0.91140 1.02124 1.65005 1.25660 1.01269 1.30930 1.22000 1.00590 0.94529 0.88648 1.22235 1.00722 0.95977 0.96479 0.91922 1.21354 1.00108 0.93914 0.98681 1.22952 0.98937 0.96733 0.97321 1.21902 0.98978 0.96770 0.96842 1.22615 1.00797 0.94330 0.95735 0.88991 1.22596 0.95422 0.88778 1.00681 0.93875 0.92359 0.90547 0.95811 0.94185 0.92608 0.88373 0.92697 0.92395 0.89846 0.91292 0.91802 0.91562 0.91862 0.91492 0.91563 0.89908 0.93365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.24 59.84 0.61 1.91 16 2 N -0.60 -12.71 2.86 -182.96 -0.52 -13.24 16 3 C 0.22 5.44 4.23 -5.20 -0.02 5.42 16 4 C -0.53 -15.52 9.94 -34.44 -0.34 -15.86 16 5 H 0.07 2.40 8.06 -52.49 -0.42 1.97 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 7 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 8 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 12 C 0.51 10.68 7.25 -10.98 -0.08 10.60 16 13 O -0.52 -13.24 15.16 5.55 0.08 -13.16 16 14 C 0.03 0.50 3.66 -4.98 -0.02 0.48 16 15 N -0.50 -7.75 4.97 -233.18 -1.16 -8.91 16 16 C 0.07 1.00 5.61 -3.64 -0.02 0.98 16 17 C -0.13 -1.47 2.59 -90.88 -0.24 -1.71 16 18 H 0.06 0.68 8.00 -51.93 -0.42 0.26 16 19 C -0.10 -0.93 6.72 -26.70 -0.18 -1.11 16 20 C -0.12 -0.94 6.95 -23.37 -0.16 -1.10 16 21 C -0.11 -0.86 6.61 -25.65 -0.17 -1.03 16 22 C -0.12 -1.20 3.17 -89.18 -0.28 -1.48 16 23 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 24 C 0.05 0.60 6.39 -2.64 -0.02 0.59 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 27 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 28 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 29 H 0.04 1.08 6.47 -51.93 -0.34 0.75 16 30 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 31 H 0.10 1.38 7.35 -51.93 -0.38 1.00 16 32 H 0.06 0.72 8.01 -51.92 -0.42 0.30 16 33 H 0.06 0.89 7.35 -51.93 -0.38 0.51 16 34 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.49 7.89 -51.93 -0.41 0.08 16 LS Contribution 328.88 15.07 4.96 4.96 Total: -1.00 -34.57 328.88 -8.85 -43.42 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -7.30 Total: -2.59 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -1.01 Total: -0.28 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: -0.91 Total: -49.59 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.08 Total: -13.16 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.57 -8.85 -43.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148090523.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.770 kcal (2) G-P(sol) polarization free energy of solvation -34.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds