Wall clock time and date at job start Mon Mar 30 2020 04:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46491 * 120.00453 * 2 1 4 4 C 1.50702 * 109.46957 * 90.00133 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72213 * 4 3 2 7 7 N 1.31514 * 119.99985 * 180.27663 * 6 4 3 8 8 Si 1.86800 * 119.99777 * 0.28166 * 6 4 3 9 9 H 1.48498 * 109.47109 * 89.99834 * 8 6 4 10 10 H 1.48507 * 109.46754 * 209.99574 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99405 * 8 6 4 12 12 C 1.34780 * 119.99526 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99673 * 179.97438 * 12 2 1 14 14 C 1.50700 * 120.00400 * 359.97438 * 12 2 1 15 15 N 1.46894 * 109.47448 * 180.02562 * 14 12 2 16 16 C 1.49883 * 110.99851 * 289.56154 * 15 14 12 17 17 C 1.50016 * 104.44784 * 244.75346 * 16 15 14 18 18 H 1.09001 * 108.33192 * 78.09651 * 17 16 15 19 19 C 1.49872 * 127.30145 * 211.01944 * 17 16 15 20 20 C 1.55964 * 104.00407 * 148.81610 * 19 17 16 21 21 C 1.56307 * 105.76593 * 352.93604 * 20 19 17 22 22 C 1.51630 * 101.80500 * 334.48338 * 21 20 19 23 23 H 1.08993 * 111.33970 * 287.41218 * 22 21 20 24 24 C 1.50137 * 111.00304 * 170.00261 * 15 14 12 25 25 H 1.09000 * 109.47583 * 89.99529 * 1 2 3 26 26 H 1.09005 * 109.47610 * 210.00002 * 1 2 3 27 27 H 1.09006 * 109.46979 * 329.99538 * 1 2 3 28 28 H 1.09004 * 109.47166 * 330.00399 * 3 2 1 29 29 H 1.08994 * 109.47507 * 210.00106 * 3 2 1 30 30 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 31 31 H 1.08995 * 109.47359 * 300.00599 * 14 12 2 32 32 H 1.09008 * 109.46888 * 59.99948 * 14 12 2 33 33 H 1.08994 * 110.44188 * 3.49806 * 16 15 14 34 34 H 1.09004 * 110.43867 * 126.01553 * 16 15 14 35 35 H 1.08990 * 110.52392 * 30.18016 * 19 17 16 36 36 H 1.09005 * 110.63693 * 267.49942 * 19 17 16 37 37 H 1.09003 * 110.18649 * 233.86930 * 20 19 17 38 38 H 1.08995 * 110.19278 * 112.01256 * 20 19 17 39 39 H 1.08996 * 110.96600 * 216.35363 * 21 20 19 40 40 H 1.09005 * 110.99138 * 92.62188 * 21 20 19 41 41 H 1.08997 * 110.86934 * 266.33773 * 24 15 14 42 42 H 1.08997 * 110.86181 * 29.80153 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7036 1.4208 5 1 2.0982 1.0956 2.2418 6 6 3.1316 2.8746 1.6728 7 7 3.3556 3.2514 2.9128 8 14 3.7385 3.9259 0.2530 9 1 2.6895 4.9090 -0.1187 10 1 4.9703 4.6473 0.6625 11 1 4.0384 3.0571 -0.9134 12 6 2.1388 -1.1673 -0.0005 13 8 3.3516 -1.1673 -0.0010 14 6 1.3852 -2.4724 -0.0005 15 7 2.3397 -3.5890 -0.0005 16 6 3.0448 -3.6928 -1.3190 17 6 2.5992 -5.0112 -1.8790 18 1 1.5960 -4.8887 -2.2874 19 6 3.3780 -5.9284 -2.7726 20 6 2.8692 -7.3517 -2.3881 21 6 1.9421 -7.1502 -1.1459 22 6 2.4909 -5.8664 -0.5543 23 1 3.4576 -6.0304 -0.0784 24 6 1.6402 -4.8949 0.2428 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6084 2.0283 -0.5138 29 1 3.1499 1.1383 -0.5138 30 1 3.8357 4.0754 3.0900 31 1 0.7589 -2.5303 0.8896 32 1 0.7582 -2.5299 -0.8903 33 1 2.7431 -2.8781 -1.9773 34 1 4.1252 -3.6863 -1.1745 35 1 4.4460 -5.8381 -2.5752 36 1 3.1647 -5.7165 -3.8203 37 1 3.7104 -7.9947 -2.1293 38 1 2.3037 -7.7847 -3.2132 39 1 2.0448 -7.9779 -0.4442 40 1 0.9028 -7.0262 -1.4503 41 1 1.6503 -5.1492 1.3026 42 1 0.6192 -4.8652 -0.1378 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000148090523.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:57 Heat of formation + Delta-G solvation = -35.281550 kcal Electronic energy + Delta-G solvation = -20773.228532 eV Core-core repulsion = 17752.713591 eV Total energy + Delta-G solvation = -3020.514940 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.51937 -40.30601 -36.79832 -36.23468 -34.69974 -31.67064 -31.25772 -30.12547 -27.48618 -27.12244 -26.67087 -24.14973 -22.21826 -21.31690 -20.63654 -19.82450 -19.15572 -17.96633 -17.34723 -17.14108 -16.39339 -16.13900 -15.86431 -15.51566 -15.29167 -14.78061 -14.44860 -14.28078 -13.82487 -13.64985 -13.61472 -13.45675 -13.25203 -13.22551 -12.83509 -12.59180 -12.39654 -12.24243 -12.04514 -12.02073 -11.78253 -11.76563 -11.61835 -11.26574 -10.93572 -10.82882 -10.60706 -9.39520 -9.26735 -8.34811 -6.39930 1.30464 1.35681 1.46546 1.82523 2.22767 2.30798 2.94221 2.99225 3.06546 3.68445 3.76333 3.91235 4.12645 4.18780 4.24783 4.30607 4.36852 4.42471 4.48356 4.58923 4.64796 4.69612 4.73131 4.77815 4.80504 4.90874 4.95724 4.96739 4.99856 5.11714 5.13869 5.21472 5.29183 5.45782 5.48244 5.52679 5.61802 5.81091 5.96119 6.24657 6.61408 6.73171 7.21339 7.47828 8.82496 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.036942 B = 0.004009 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.755423 B = 6983.006861 C = 7181.906071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.612 5.612 3 C 0.226 3.774 4 C -0.537 4.537 5 H 0.026 0.974 6 C 0.009 3.991 7 N -0.946 5.946 8 Si 0.951 3.049 9 H -0.249 1.249 10 H -0.281 1.281 11 H -0.258 1.258 12 C 0.494 3.506 13 O -0.579 6.579 14 C 0.048 3.952 15 N -0.539 5.539 16 C 0.072 3.928 17 C -0.130 4.130 18 H 0.073 0.927 19 C -0.105 4.105 20 C -0.117 4.117 21 C -0.100 4.100 22 C -0.111 4.111 23 H 0.074 0.926 24 C 0.055 3.945 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.017 0.983 30 H 0.269 0.731 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.043 0.957 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.902 -20.413 -13.314 25.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.345 5.345 3 C 0.103 3.897 4 C -0.576 4.576 5 H 0.045 0.955 6 C -0.189 4.189 7 N -0.586 5.586 8 Si 0.773 3.227 9 H -0.173 1.173 10 H -0.207 1.207 11 H -0.182 1.182 12 C 0.283 3.717 13 O -0.458 6.458 14 C -0.083 4.083 15 N -0.264 5.264 16 C -0.055 4.055 17 C -0.149 4.149 18 H 0.092 0.908 19 C -0.143 4.143 20 C -0.154 4.154 21 C -0.138 4.138 22 C -0.130 4.130 23 H 0.093 0.907 24 C -0.071 4.071 25 H 0.098 0.902 26 H 0.107 0.893 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.035 0.965 30 H 0.078 0.922 31 H 0.135 0.865 32 H 0.107 0.893 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.870 -20.142 -12.792 25.125 hybrid contribution 0.168 1.059 -0.337 1.124 sum -7.703 -19.083 -13.129 24.410 Atomic orbital electron populations 1.21970 0.77615 1.04020 1.02882 1.47986 1.08452 1.05871 1.72143 1.19284 0.92633 0.82587 0.95188 1.21586 1.36714 1.06838 0.92438 0.95542 1.25897 0.95234 0.99025 0.98735 1.70058 1.42621 1.24630 1.21330 0.85667 0.78839 0.78917 0.79244 1.17262 1.20704 1.18169 1.21280 0.88064 0.86339 0.76060 1.90631 1.16355 1.87809 1.50987 1.22094 0.93915 0.87931 1.04400 1.64893 1.26946 1.02927 1.31644 1.21832 0.98895 0.96188 0.88585 1.22150 1.01202 0.94261 0.97286 0.90840 1.21410 0.99416 0.94609 0.98856 1.22935 0.99244 0.95558 0.97709 1.21902 0.99483 0.95518 0.96860 1.22586 1.00071 0.95374 0.94980 0.90741 1.22655 0.96401 0.86949 1.01107 0.90232 0.89344 0.91526 0.93298 0.96531 0.92248 0.86548 0.89299 0.93890 0.92882 0.92292 0.90935 0.91113 0.90284 0.90398 0.90375 0.89841 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.19 10.24 127.77 1.31 3.50 16 2 N -0.61 -25.55 2.86 -851.14 -2.43 -27.98 16 3 C 0.23 11.37 4.23 85.64 0.36 11.73 16 4 C -0.54 -32.67 9.94 25.60 0.25 -32.42 16 5 H 0.03 1.80 8.06 -2.91 -0.02 1.77 16 6 C 0.01 0.54 5.47 84.66 0.46 1.00 16 7 N -0.95 -61.23 13.96 21.45 0.30 -60.93 16 8 Si 0.95 45.52 27.47 68.60 1.88 47.41 16 9 H -0.25 -10.78 7.11 99.48 0.71 -10.08 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.26 -11.97 6.54 99.48 0.65 -11.32 16 12 C 0.49 20.96 7.25 87.66 0.64 21.59 16 13 O -0.58 -30.76 15.16 -3.05 -0.05 -30.80 16 14 C 0.05 1.40 3.66 85.56 0.31 1.71 16 15 N -0.54 -16.28 4.97 -891.64 -4.43 -20.71 16 16 C 0.07 2.12 5.61 84.76 0.48 2.59 16 17 C -0.13 -2.65 2.59 -10.96 -0.03 -2.68 16 18 H 0.07 1.37 8.00 -2.39 -0.02 1.35 16 19 C -0.10 -1.75 6.72 30.62 0.21 -1.54 16 20 C -0.12 -1.47 6.95 32.77 0.23 -1.24 16 21 C -0.10 -1.29 6.61 31.30 0.21 -1.08 16 22 C -0.11 -2.10 3.17 -9.86 -0.03 -2.13 16 23 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 24 C 0.05 1.15 6.39 85.26 0.54 1.69 16 25 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.09 1.97 6.44 -2.38 -0.02 1.95 16 27 H 0.07 2.03 8.07 -2.38 -0.02 2.01 16 28 H 0.05 2.21 7.51 -2.38 -0.02 2.20 16 29 H 0.02 0.91 6.47 -2.39 -0.02 0.90 16 30 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 31 H 0.12 2.97 7.35 -2.39 -0.02 2.95 16 32 H 0.09 2.01 8.01 -2.38 -0.02 1.99 16 33 H 0.04 1.35 7.35 -2.39 -0.02 1.33 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.07 1.18 7.89 -2.39 -0.02 1.17 16 Total: -1.00 -80.18 328.88 1.13 -79.05 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.92 Total: 11.23 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 4.94 Total: 2.74 kcal Atomic # 7 Polarization: -103.06 SS G_CDS: -6.56 Total: -109.62 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.05 Total: -30.80 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.41 kcal Total: -80.18 1.13 -79.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148090523.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.768 kcal (2) G-P(sol) polarization free energy of solvation -80.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds