Wall clock time and date at job start Mon Mar 30 2020 04:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46716 * 2 1 4 4 C 1.53002 * 109.47187 * 240.00339 * 2 1 3 5 5 C 1.50689 * 109.47118 * 59.99946 * 4 2 1 6 6 H 1.08003 * 120.00614 * 359.97438 * 5 4 2 7 7 C 1.37886 * 119.99910 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99914 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99868 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47126 * 90.00476 * 9 7 5 11 11 H 1.48508 * 109.46959 * 210.00388 * 9 7 5 12 12 H 1.48504 * 109.47317 * 329.99951 * 9 7 5 13 13 C 1.52997 * 109.47239 * 120.00025 * 2 1 3 14 14 N 1.46907 * 109.47102 * 300.00202 * 13 2 1 15 15 C 1.46901 * 110.99827 * 179.97438 * 14 13 2 16 16 C 1.53004 * 109.46790 * 180.02562 * 15 14 13 17 17 C 1.53004 * 109.46909 * 179.97438 * 16 15 14 18 18 N 1.46498 * 109.47171 * 179.97438 * 17 16 15 19 19 C 1.35308 * 125.86965 * 124.99697 * 18 17 16 20 20 C 1.35347 * 106.17713 * 179.97438 * 19 18 17 21 21 N 1.33774 * 106.49812 * 0.02562 * 20 19 18 22 22 N 1.28637 * 108.88333 * 0.02562 * 21 20 19 23 23 H 1.08993 * 109.47663 * 300.00029 * 1 2 3 24 24 H 1.09004 * 109.47545 * 60.00084 * 1 2 3 25 25 H 1.09004 * 109.46687 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47193 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47644 * 299.99770 * 3 2 1 28 28 H 1.09003 * 109.47171 * 60.00147 * 3 2 1 29 29 H 1.09004 * 109.46701 * 179.97438 * 4 2 1 30 30 H 1.08999 * 109.46887 * 299.99122 * 4 2 1 31 31 H 0.97001 * 119.99964 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47248 * 180.02562 * 13 2 1 33 33 H 1.09000 * 109.47189 * 60.00105 * 13 2 1 34 34 H 1.00898 * 110.99930 * 56.04522 * 14 13 2 35 35 H 1.08995 * 109.47412 * 60.00323 * 15 14 13 36 36 H 1.08997 * 109.46933 * 299.99604 * 15 14 13 37 37 H 1.08995 * 109.47091 * 59.99867 * 16 15 14 38 38 H 1.08996 * 109.46859 * 299.99952 * 16 15 14 39 39 H 1.09002 * 109.46649 * 59.99895 * 17 16 15 40 40 H 1.09000 * 109.47178 * 300.00172 * 17 16 15 41 41 H 1.07997 * 126.91159 * 359.97438 * 19 18 17 42 42 H 1.08002 * 126.75518 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4796 6 1 0.9164 0.8671 -2.3806 7 6 1.8713 -0.4815 -3.7320 8 7 2.6274 -1.5507 -3.8527 9 14 1.2480 0.3988 -5.2572 10 1 2.2254 1.4411 -5.6612 11 1 1.0837 -0.5805 -6.3615 12 1 -0.0607 1.0353 -4.9613 13 6 2.0400 -0.7212 1.2492 14 7 1.5503 -0.0287 2.4487 15 6 2.0208 -0.6952 3.6703 16 6 1.4912 0.0526 4.8956 17 6 1.9808 -0.6419 6.1679 18 7 1.4742 0.0744 7.3411 19 6 0.7566 -0.4675 8.3522 20 6 0.5009 0.5422 9.2165 21 7 1.0666 1.6382 8.6985 22 7 1.6345 1.3278 7.5868 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6765 1.9563 0.8900 29 1 3.1300 -0.7207 -1.2494 30 1 1.6768 -1.7489 -1.2492 31 1 2.8617 -1.8821 -4.7337 32 1 3.1300 -0.7208 1.2494 33 1 1.6767 -1.7489 1.2492 34 1 0.5438 0.0413 2.4402 35 1 3.1107 -0.6954 3.6874 36 1 1.6570 -1.7226 3.6868 37 1 0.4014 0.0524 4.8783 38 1 1.8546 1.0801 4.8792 39 1 3.0707 -0.6421 6.1853 40 1 1.6170 -1.6693 6.1840 41 1 0.4497 -1.4983 8.4499 42 1 -0.0519 0.4763 10.1420 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168141524.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:02 Heat of formation + Delta-G solvation = 77.980309 kcal Electronic energy + Delta-G solvation = -19657.861286 eV Core-core repulsion = 16674.550500 eV Total energy + Delta-G solvation = -2983.310787 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.47252 -37.95584 -36.30894 -34.32139 -32.38882 -31.30375 -30.88771 -27.19440 -26.50152 -26.33216 -24.62030 -23.04919 -22.57778 -21.87433 -21.32700 -17.93913 -17.82648 -16.71477 -16.29533 -15.96256 -15.30127 -14.90674 -14.62993 -14.51366 -14.24208 -13.82280 -13.16341 -12.94818 -12.57973 -12.27437 -12.24999 -11.99725 -11.86197 -11.56702 -11.29636 -11.12588 -10.97089 -10.87100 -10.77277 -10.51703 -10.38606 -10.28117 -10.14154 -9.71291 -9.66051 -9.05034 -8.85919 -8.33407 -8.20563 -5.98048 -3.98101 1.34154 2.05335 2.34130 3.32517 3.39072 3.41777 3.96661 4.13104 4.32110 4.47471 4.61617 4.73171 4.77319 4.93982 4.98459 5.07215 5.37842 5.38331 5.41523 5.61582 5.68969 5.79954 5.84868 5.94189 5.96584 6.19279 6.27964 6.29484 6.46546 6.63794 6.75410 6.81002 7.15498 7.18062 7.24103 7.33266 7.56791 7.67867 7.82581 8.02078 8.26878 8.46478 9.07191 9.64811 11.13619 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.057436 B = 0.002652 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.384715 B =10556.323684 C =10733.882870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.059 4.059 3 C -0.117 4.117 4 C 0.033 3.967 5 C -0.507 4.507 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.070 3.930 14 N -0.686 5.686 15 C 0.062 3.938 16 C -0.131 4.131 17 C 0.115 3.885 18 N -0.287 5.287 19 C -0.053 4.053 20 C -0.055 4.055 21 N -0.276 5.276 22 N -0.079 5.079 23 H 0.033 0.967 24 H 0.065 0.935 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.055 0.945 28 H 0.042 0.958 29 H 0.015 0.985 30 H 0.012 0.988 31 H 0.259 0.741 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.339 0.661 35 H 0.075 0.925 36 H 0.028 0.972 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.189 0.811 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.409 -2.022 22.028 22.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.059 4.059 3 C -0.174 4.174 4 C -0.004 4.004 5 C -0.545 4.545 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.058 4.058 14 N -0.318 5.318 15 C -0.068 4.068 16 C -0.169 4.169 17 C -0.006 4.006 18 N -0.081 5.081 19 C -0.204 4.204 20 C -0.213 4.213 21 N -0.142 5.142 22 N -0.059 5.059 23 H 0.052 0.948 24 H 0.084 0.916 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.158 0.842 35 H 0.094 0.906 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.206 0.794 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -2.198 -0.359 21.376 21.491 hybrid contribution -1.294 -1.721 -0.613 2.239 sum -3.493 -2.081 20.762 21.156 Atomic orbital electron populations 1.21775 0.96094 1.00325 1.00481 1.20632 0.94720 0.96189 0.94350 1.21606 0.99808 0.95749 1.00240 1.19127 0.96136 0.94957 0.90192 1.21232 1.30786 1.11904 0.90591 0.92285 1.25021 0.95418 0.95110 0.99085 1.69962 1.37325 1.23182 1.23305 0.86657 0.79251 0.79423 0.83045 1.20749 1.21398 1.19944 1.22126 0.99857 0.94629 0.89184 1.60529 1.16466 1.53731 1.01056 1.21805 1.00799 0.94818 0.89408 1.21861 1.01631 1.01956 0.91494 1.22189 1.01231 0.95533 0.81676 1.47598 1.35124 1.07835 1.17551 1.23721 1.02906 1.02440 0.91378 1.23641 1.05604 0.89185 1.02849 1.75150 1.10691 1.25510 1.02816 1.78352 1.19855 0.95289 1.12449 0.94844 0.91636 0.94130 0.94140 0.92647 0.93873 0.96658 0.96932 0.93160 0.91450 0.95795 0.84184 0.90649 0.95351 0.91270 0.88941 0.87929 0.87608 0.79364 0.79459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 7.89 37.16 0.29 -2.05 16 2 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16 3 C -0.12 -2.24 8.06 37.16 0.30 -1.94 16 4 C 0.03 0.83 4.04 -27.89 -0.11 0.71 16 5 C -0.51 -13.74 7.65 -34.44 -0.26 -14.00 16 6 H 0.06 1.56 5.68 -52.48 -0.30 1.26 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 9 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.07 1.15 4.65 -3.82 -0.02 1.13 16 14 N -0.69 -9.12 5.71 -113.77 -0.65 -9.77 16 15 C 0.06 0.61 5.69 -3.82 -0.02 0.59 16 16 C -0.13 -1.12 5.60 -26.73 -0.15 -1.27 16 17 C 0.12 0.74 6.46 -4.04 -0.03 0.71 16 18 N -0.29 -2.62 3.44 -61.26 -0.21 -2.83 16 19 C -0.05 -0.38 11.57 -17.05 -0.20 -0.58 16 20 C -0.06 -0.48 12.05 -17.74 -0.21 -0.70 16 21 N -0.28 -3.52 12.41 30.24 0.38 -3.14 16 22 N -0.08 -1.00 12.91 60.35 0.78 -0.22 16 23 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 24 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 28 H 0.04 0.75 7.60 -51.93 -0.39 0.35 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.34 4.36 6.77 -39.29 -0.27 4.10 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.09 0.99 8.12 -51.93 -0.42 0.57 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.11 0.38 8.07 -51.93 -0.42 -0.04 16 41 H 0.19 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.19 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 340.23 15.07 5.13 5.13 Total: -1.00 -32.44 340.23 -6.50 -38.94 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -7.04 Total: -1.48 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -0.60 Total: -17.19 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 1.03 Total: -41.88 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.44 -6.50 -38.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168141524.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.919 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds