Wall clock time and date at job start Mon Mar 30 2020 04:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46716 * 2 1 4 4 C 1.53002 * 109.47187 * 240.00339 * 2 1 3 5 5 C 1.50689 * 109.47118 * 59.99946 * 4 2 1 6 6 H 1.08003 * 120.00614 * 359.97438 * 5 4 2 7 7 C 1.37886 * 119.99910 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99914 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99868 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47126 * 90.00476 * 9 7 5 11 11 H 1.48508 * 109.46959 * 210.00388 * 9 7 5 12 12 H 1.48504 * 109.47317 * 329.99951 * 9 7 5 13 13 C 1.52997 * 109.47239 * 120.00025 * 2 1 3 14 14 N 1.46907 * 109.47102 * 300.00202 * 13 2 1 15 15 C 1.46901 * 110.99827 * 179.97438 * 14 13 2 16 16 C 1.53004 * 109.46790 * 180.02562 * 15 14 13 17 17 C 1.53004 * 109.46909 * 179.97438 * 16 15 14 18 18 N 1.46498 * 109.47171 * 179.97438 * 17 16 15 19 19 C 1.35308 * 125.86965 * 124.99697 * 18 17 16 20 20 C 1.35347 * 106.17713 * 179.97438 * 19 18 17 21 21 N 1.33774 * 106.49812 * 0.02562 * 20 19 18 22 22 N 1.28637 * 108.88333 * 0.02562 * 21 20 19 23 23 H 1.08993 * 109.47663 * 300.00029 * 1 2 3 24 24 H 1.09004 * 109.47545 * 60.00084 * 1 2 3 25 25 H 1.09004 * 109.46687 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47193 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47644 * 299.99770 * 3 2 1 28 28 H 1.09003 * 109.47171 * 60.00147 * 3 2 1 29 29 H 1.09004 * 109.46701 * 179.97438 * 4 2 1 30 30 H 1.08999 * 109.46887 * 299.99122 * 4 2 1 31 31 H 0.97001 * 119.99964 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47248 * 180.02562 * 13 2 1 33 33 H 1.09000 * 109.47189 * 60.00105 * 13 2 1 34 34 H 1.00898 * 110.99930 * 56.04522 * 14 13 2 35 35 H 1.08995 * 109.47412 * 60.00323 * 15 14 13 36 36 H 1.08997 * 109.46933 * 299.99604 * 15 14 13 37 37 H 1.08995 * 109.47091 * 59.99867 * 16 15 14 38 38 H 1.08996 * 109.46859 * 299.99952 * 16 15 14 39 39 H 1.09002 * 109.46649 * 59.99895 * 17 16 15 40 40 H 1.09000 * 109.47178 * 300.00172 * 17 16 15 41 41 H 1.07997 * 126.91159 * 359.97438 * 19 18 17 42 42 H 1.08002 * 126.75518 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4796 6 1 0.9164 0.8671 -2.3806 7 6 1.8713 -0.4815 -3.7320 8 7 2.6274 -1.5507 -3.8527 9 14 1.2480 0.3988 -5.2572 10 1 2.2254 1.4411 -5.6612 11 1 1.0837 -0.5805 -6.3615 12 1 -0.0607 1.0353 -4.9613 13 6 2.0400 -0.7212 1.2492 14 7 1.5503 -0.0287 2.4487 15 6 2.0208 -0.6952 3.6703 16 6 1.4912 0.0526 4.8956 17 6 1.9808 -0.6419 6.1679 18 7 1.4742 0.0744 7.3411 19 6 0.7566 -0.4675 8.3522 20 6 0.5009 0.5422 9.2165 21 7 1.0666 1.6382 8.6985 22 7 1.6345 1.3278 7.5868 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6765 1.9563 0.8900 29 1 3.1300 -0.7207 -1.2494 30 1 1.6768 -1.7489 -1.2492 31 1 2.8617 -1.8821 -4.7337 32 1 3.1300 -0.7208 1.2494 33 1 1.6767 -1.7489 1.2492 34 1 0.5438 0.0413 2.4402 35 1 3.1107 -0.6954 3.6874 36 1 1.6570 -1.7226 3.6868 37 1 0.4014 0.0524 4.8783 38 1 1.8546 1.0801 4.8792 39 1 3.0707 -0.6421 6.1853 40 1 1.6170 -1.6693 6.1840 41 1 0.4497 -1.4983 8.4499 42 1 -0.0519 0.4763 10.1420 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168141524.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:01 Heat of formation + Delta-G solvation = 56.119509 kcal Electronic energy + Delta-G solvation = -19658.809242 eV Core-core repulsion = 16674.550500 eV Total energy + Delta-G solvation = -2984.258742 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.12939 -39.29693 -37.23892 -35.46405 -34.24734 -32.00473 -31.81138 -29.01873 -27.89958 -27.57418 -25.99337 -24.20148 -23.59533 -22.85157 -21.98998 -19.49009 -18.46421 -18.32937 -17.37505 -16.93538 -16.61926 -15.94477 -15.67090 -15.52259 -15.37105 -14.98795 -14.57593 -14.33184 -13.91955 -13.64508 -13.43985 -13.19719 -12.90313 -12.72558 -12.65011 -12.48409 -12.45027 -12.24866 -12.13545 -11.95799 -11.88585 -11.74493 -11.36476 -11.06631 -10.85572 -10.72017 -10.50446 -10.29507 -9.27747 -8.14353 -6.20837 0.72441 1.40660 1.41150 1.51406 1.52182 1.67137 2.43447 3.18234 3.19660 3.58908 3.81904 3.91974 4.06263 4.18215 4.20224 4.29991 4.37187 4.38663 4.39805 4.43022 4.67297 4.76366 4.79706 4.85340 4.96595 5.05720 5.07813 5.18047 5.21858 5.23646 5.33704 5.52048 5.54413 5.58628 5.65362 5.72453 5.87436 5.93187 6.11042 6.37691 6.53033 6.94282 7.46319 7.57791 8.97851 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.057436 B = 0.002652 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.384715 B =10556.323684 C =10733.882870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.056 4.056 3 C -0.108 4.108 4 C 0.039 3.961 5 C -0.514 4.514 6 H 0.064 0.936 7 C -0.004 4.004 8 N -0.937 5.937 9 Si 0.955 3.045 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.263 1.263 13 C 0.084 3.916 14 N -0.691 5.691 15 C 0.064 3.936 16 C -0.118 4.118 17 C 0.113 3.887 18 N -0.287 5.287 19 C -0.035 4.035 20 C -0.070 4.070 21 N -0.320 5.320 22 N -0.129 5.129 23 H 0.066 0.934 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.030 0.970 27 H 0.037 0.963 28 H 0.065 0.935 29 H -0.015 1.015 30 H -0.013 1.013 31 H 0.260 0.740 32 H 0.058 0.942 33 H 0.024 0.976 34 H 0.344 0.656 35 H 0.076 0.924 36 H 0.048 0.952 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.110 0.890 40 H 0.145 0.855 41 H 0.236 0.764 42 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.712 -2.671 23.431 24.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.057 4.057 3 C -0.165 4.165 4 C 0.001 3.999 5 C -0.552 4.552 6 H 0.082 0.918 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.780 3.220 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.188 1.188 13 C -0.045 4.045 14 N -0.323 5.323 15 C -0.066 4.066 16 C -0.157 4.157 17 C -0.007 4.007 18 N -0.081 5.081 19 C -0.186 4.186 20 C -0.228 4.228 21 N -0.185 5.185 22 N -0.108 5.108 23 H 0.085 0.915 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.003 0.997 30 H 0.005 0.995 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.163 0.837 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.128 0.872 40 H 0.163 0.837 41 H 0.252 0.748 42 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -3.499 -0.981 22.785 23.073 hybrid contribution -0.894 -1.584 -0.980 2.066 sum -4.393 -2.565 21.805 22.391 Atomic orbital electron populations 1.21684 0.94734 1.00488 1.01063 1.20500 0.95771 0.95936 0.93447 1.21513 0.99128 0.95528 1.00369 1.19016 0.94113 0.94092 0.92637 1.21619 1.30190 1.11854 0.91531 0.91790 1.25904 0.95775 0.95916 1.02515 1.70097 1.38859 1.24857 1.24012 0.85599 0.79073 0.78243 0.79064 1.20241 1.21182 1.18769 1.21795 0.99202 0.94330 0.89189 1.60435 1.16801 1.53977 1.01126 1.21843 1.00934 0.95639 0.88144 1.21656 1.01347 1.00564 0.92121 1.22390 1.01871 0.96620 0.79794 1.47827 1.34791 1.07194 1.18334 1.24468 1.00557 1.03945 0.89660 1.24278 1.05661 0.88688 1.04217 1.75076 1.12029 1.27786 1.03593 1.78296 1.21976 0.97301 1.13265 0.91534 0.93703 0.94178 0.95110 0.94438 0.91621 0.99700 0.99487 0.93166 0.92366 0.95829 0.83677 0.90556 0.93418 0.91375 0.91579 0.87202 0.83712 0.74755 0.76772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.29 7.89 71.98 0.57 -3.72 16 2 C -0.06 -2.17 0.60 -52.18 -0.03 -2.20 16 3 C -0.11 -4.10 8.06 71.98 0.58 -3.52 16 4 C 0.04 1.99 4.04 29.85 0.12 2.11 16 5 C -0.51 -28.27 7.65 25.60 0.20 -28.08 16 6 H 0.06 3.40 5.68 -2.91 -0.02 3.38 16 7 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 8 N -0.94 -56.87 13.29 21.45 0.28 -56.59 16 9 Si 0.95 44.38 29.54 68.60 2.03 46.40 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 13 C 0.08 2.66 4.65 86.30 0.40 3.06 16 14 N -0.69 -16.97 5.71 -513.87 -2.94 -19.91 16 15 C 0.06 1.10 5.69 86.30 0.49 1.59 16 16 C -0.12 -1.77 5.60 30.60 0.17 -1.60 16 17 C 0.11 1.11 6.46 86.38 0.56 1.67 16 18 N -0.29 -4.61 3.44 -347.74 -1.20 -5.81 16 19 C -0.03 -0.38 11.57 83.49 0.97 0.59 16 20 C -0.07 -1.09 12.05 83.73 1.01 -0.09 16 21 N -0.32 -8.09 12.41 -58.26 -0.72 -8.81 16 22 N -0.13 -3.23 12.91 37.02 0.48 -2.75 16 23 H 0.07 1.88 6.57 -2.39 -0.02 1.86 16 24 H 0.04 1.74 6.62 -2.39 -0.02 1.73 16 25 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 26 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.04 1.52 6.62 -2.39 -0.02 1.51 16 28 H 0.06 2.18 7.60 -2.39 -0.02 2.16 16 29 H -0.02 -0.87 8.14 -2.38 -0.02 -0.89 16 30 H -0.01 -0.74 8.14 -2.39 -0.02 -0.75 16 31 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 32 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.34 7.91 6.77 -89.70 -0.61 7.30 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 1.37 8.12 -2.39 -0.02 1.35 16 39 H 0.11 0.95 8.14 -2.39 -0.02 0.94 16 40 H 0.15 0.32 8.07 -2.39 -0.02 0.30 16 41 H 0.24 0.07 8.06 -2.91 -0.02 0.05 16 42 H 0.22 1.72 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -73.51 340.23 3.81 -69.70 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 0.38 Total: 7.71 kcal Atomic # 6 Polarization: -35.45 SS G_CDS: 5.49 Total: -29.96 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -4.09 Total: -93.86 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -73.51 3.81 -69.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168141524.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.824 kcal (2) G-P(sol) polarization free energy of solvation -73.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds