Wall clock time and date at job start Mon Mar 30 2020 04:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47364 * 2 1 4 4 N 1.46896 * 109.47413 * 240.00201 * 2 1 3 5 5 C 1.53007 * 109.47144 * 119.99811 * 2 1 3 6 6 H 1.09002 * 109.46345 * 57.55677 * 5 2 1 7 7 C 1.50699 * 109.47024 * 297.55451 * 5 2 1 8 8 C 1.39864 * 126.04195 * 270.04732 * 7 5 2 9 9 N 1.30837 * 108.20674 * 180.02562 * 8 7 5 10 10 N 1.40087 * 108.19960 * 359.97438 * 9 8 7 11 11 C 1.46502 * 126.03446 * 180.02562 * 10 9 8 12 12 C 1.34943 * 107.92948 * 0.02562 * 10 9 8 13 13 N 1.46897 * 109.47260 * 177.55089 * 5 2 1 14 14 C 1.46901 * 110.99893 * 43.66004 * 13 5 2 15 15 C 1.46898 * 110.99921 * 167.61034 * 13 5 2 16 16 H 1.09001 * 109.47004 * 291.74639 * 15 13 5 17 17 C 1.52999 * 109.47019 * 51.74811 * 15 13 5 18 18 C 1.50701 * 109.47113 * 171.74813 * 15 13 5 19 19 H 1.08006 * 120.00049 * 0.02562 * 18 15 13 20 20 C 1.37872 * 120.00147 * 180.02562 * 18 15 13 21 21 N 1.31515 * 120.00000 * 359.97438 * 20 18 15 22 22 Si 1.86807 * 120.00287 * 179.97438 * 20 18 15 23 23 H 1.48495 * 109.46814 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46755 * 120.00187 * 22 20 18 25 25 H 1.48496 * 109.46958 * 239.99896 * 22 20 18 26 26 H 1.09003 * 109.47155 * 300.00349 * 1 2 3 27 27 H 1.09003 * 109.46868 * 59.99865 * 1 2 3 28 28 H 1.08994 * 109.47020 * 179.97438 * 1 2 3 29 29 H 1.00901 * 111.00207 * 62.61056 * 4 2 1 30 30 H 1.00900 * 111.00624 * 186.56813 * 4 2 1 31 31 H 1.07999 * 125.89840 * 0.02562 * 8 7 5 32 32 H 1.09006 * 109.47203 * 269.97862 * 11 10 9 33 33 H 1.08998 * 109.47271 * 29.97579 * 11 10 9 34 34 H 1.08998 * 109.47624 * 149.98002 * 11 10 9 35 35 H 1.08004 * 126.12818 * 179.73171 * 12 10 9 36 36 H 1.09005 * 109.47649 * 42.36452 * 14 13 5 37 37 H 1.09000 * 109.47426 * 162.36752 * 14 13 5 38 38 H 1.09002 * 109.47058 * 282.36669 * 14 13 5 39 39 H 1.08998 * 109.47024 * 184.85198 * 17 15 13 40 40 H 1.08997 * 109.47185 * 304.85514 * 17 15 13 41 41 H 1.09003 * 109.46814 * 64.85737 * 17 15 13 42 42 H 0.97004 * 120.00194 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0400 -0.7212 1.2493 6 1 1.6413 -1.7355 1.2714 7 6 1.5878 0.0234 2.4790 8 6 2.2857 1.0508 3.1220 9 7 1.5774 1.4458 4.1487 10 7 0.4042 0.6814 4.1911 11 6 -0.6667 0.8006 5.1836 12 6 0.4347 -0.1841 3.1562 13 7 3.5078 -0.7727 1.2201 14 6 4.0716 0.5186 0.8047 15 6 4.0460 -1.1876 2.5225 16 1 3.8626 -0.4040 3.2577 17 6 3.3581 -2.4786 2.9707 18 6 5.5292 -1.4249 2.4006 19 1 6.0227 -1.2814 1.4506 20 6 6.2561 -1.8251 3.5016 21 7 5.6552 -1.9994 4.6584 22 14 8.0945 -2.1200 3.3503 23 1 8.5249 -1.8558 1.9539 24 1 8.8194 -1.2089 4.2720 25 1 8.4006 -3.5291 3.7050 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.7317 -0.2108 -2.0380 30 1 3.0225 -0.8003 -1.1707 31 1 3.2438 1.4492 2.8228 32 1 -0.4596 0.1368 6.0232 33 1 -0.7201 1.8297 5.5388 34 1 -1.6173 0.5237 4.7277 35 1 -0.3232 -0.9145 2.9144 36 1 3.5307 1.3267 1.2971 37 1 5.1241 0.5625 1.0847 38 1 3.9785 0.6248 -0.2761 39 1 3.6940 -2.7398 3.9742 40 1 2.2780 -2.3319 2.9758 41 1 3.6122 -3.2839 2.2814 42 1 6.1666 -2.2813 5.4330 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220911478.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:40 Heat of formation + Delta-G solvation = 104.787256 kcal Electronic energy + Delta-G solvation = -21977.373618 eV Core-core repulsion = 18995.225268 eV Total energy + Delta-G solvation = -2982.148350 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.05653 -38.00551 -34.76923 -32.89745 -32.20553 -30.58516 -29.05073 -28.29945 -27.01491 -25.82530 -24.55888 -23.33341 -20.94224 -20.49942 -19.91097 -18.60444 -16.53384 -16.00668 -15.58975 -15.08599 -15.04396 -14.59205 -14.45670 -14.05242 -13.59379 -13.21287 -12.81441 -12.56211 -12.42818 -12.23618 -12.02822 -11.83521 -11.49078 -11.38152 -11.31118 -10.93614 -10.90577 -10.53235 -10.38685 -10.12589 -9.99319 -9.97995 -9.67523 -9.00738 -8.72439 -8.37138 -8.22848 -7.79508 -7.03723 -5.92258 -3.95669 2.30905 2.90676 3.29630 3.34223 3.42094 3.46178 4.46847 4.74603 4.92416 5.05338 5.18862 5.24121 5.35425 5.39639 5.45720 5.52803 5.64561 5.77327 5.90255 6.04507 6.09869 6.12363 6.20914 6.25338 6.39488 6.49422 6.76049 6.78898 7.00486 7.11296 7.18952 7.25673 7.40400 7.58318 7.67789 7.83703 7.92143 7.95080 8.14586 8.32280 8.42604 8.70496 9.11470 9.68401 11.14089 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.017833 B = 0.007542 C = 0.005890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.709651 B = 3711.545717 C = 4752.417929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.096 3.904 3 H 0.031 0.969 4 N -0.842 5.842 5 C 0.166 3.834 6 H 0.087 0.913 7 C -0.235 4.235 8 C 0.065 3.935 9 N -0.304 5.304 10 N -0.385 5.385 11 C 0.107 3.893 12 C 0.050 3.950 13 N -0.521 5.521 14 C 0.016 3.984 15 C 0.211 3.789 16 H 0.015 0.985 17 C -0.129 4.129 18 C -0.500 4.500 19 H 0.062 0.938 20 C 0.058 3.942 21 N -0.891 5.891 22 Si 0.892 3.108 23 H -0.273 1.273 24 H -0.287 1.287 25 H -0.286 1.286 26 H 0.056 0.944 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.326 0.674 30 H 0.356 0.644 31 H 0.184 0.816 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.165 0.835 36 H 0.021 0.979 37 H 0.078 0.922 38 H 0.040 0.960 39 H 0.076 0.924 40 H 0.010 0.990 41 H 0.031 0.969 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.423 5.150 -4.687 14.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.015 4.015 3 H 0.048 0.952 4 N -0.374 5.374 5 C 0.055 3.945 6 H 0.105 0.895 7 C -0.249 4.249 8 C -0.121 4.121 9 N -0.125 5.125 10 N -0.168 5.168 11 C -0.035 4.035 12 C -0.096 4.096 13 N -0.244 5.244 14 C -0.132 4.132 15 C 0.106 3.894 16 H 0.032 0.968 17 C -0.187 4.187 18 C -0.539 4.539 19 H 0.080 0.920 20 C -0.142 4.142 21 N -0.531 5.531 22 Si 0.721 3.279 23 H -0.198 1.198 24 H -0.213 1.213 25 H -0.212 1.212 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.138 0.862 30 H 0.172 0.828 31 H 0.201 0.799 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.183 0.817 36 H 0.040 0.960 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.095 0.905 40 H 0.029 0.971 41 H 0.050 0.950 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.848 4.931 -3.480 14.195 hybrid contribution 1.324 0.601 -0.065 1.455 sum -11.524 5.532 -3.545 13.265 Atomic orbital electron populations 1.21803 0.95404 1.01928 1.00772 1.21343 0.94473 0.94987 0.90727 0.95150 1.58679 1.19951 1.55920 1.02859 1.20144 0.89762 0.97074 0.87494 0.89491 1.20869 0.96422 1.03528 1.04050 1.24024 0.99215 0.96069 0.92786 1.77316 0.94737 1.18657 1.21835 1.48330 1.16714 1.28944 1.22835 1.21705 0.87097 1.03784 0.90914 1.22163 1.00126 0.96749 0.90518 1.62466 1.02189 1.26241 1.33546 1.22564 1.01553 0.90921 0.98205 1.19357 0.93492 0.93261 0.83327 0.96776 1.21796 0.95384 0.98794 1.02751 1.21201 0.92209 1.44930 0.95557 0.92032 1.24914 0.98210 0.95760 0.95363 1.69936 1.35251 1.47688 1.00196 0.86534 0.85755 0.77675 0.77974 1.19779 1.21343 1.21198 0.92493 0.93606 0.92152 0.86243 0.82802 0.79936 0.91212 0.89865 0.90089 0.81741 0.96044 0.90328 0.94118 0.90519 0.97083 0.95011 0.93282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.15 37.16 0.34 -1.45 16 2 C 0.10 1.43 2.33 -67.71 -0.16 1.27 16 3 H 0.03 0.47 6.60 -51.93 -0.34 0.13 16 4 N -0.84 -11.96 9.19 -4.67 -0.04 -12.00 16 5 C 0.17 2.94 1.58 -68.86 -0.11 2.84 16 6 H 0.09 1.67 6.90 -51.93 -0.36 1.31 16 7 C -0.24 -4.19 2.72 -105.06 -0.29 -4.47 16 8 C 0.06 1.27 8.40 -17.37 -0.15 1.13 16 9 N -0.30 -5.90 12.58 30.62 0.39 -5.51 16 10 N -0.39 -6.14 4.01 -68.16 -0.27 -6.42 16 11 C 0.11 1.14 11.47 59.85 0.69 1.83 16 12 C 0.05 0.78 9.91 -17.22 -0.17 0.61 16 13 N -0.52 -10.63 4.08 -229.68 -0.94 -11.57 16 14 C 0.02 0.30 7.46 60.07 0.45 0.75 16 15 C 0.21 5.19 1.44 -68.87 -0.10 5.09 16 16 H 0.01 0.39 5.07 -51.93 -0.26 0.13 16 17 C -0.13 -3.20 8.47 37.16 0.31 -2.89 16 18 C -0.50 -13.55 7.64 -34.44 -0.26 -13.81 16 19 H 0.06 1.67 7.22 -52.48 -0.38 1.29 16 20 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 21 N -0.89 -25.81 11.37 55.43 0.63 -25.18 16 22 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 26 H 0.06 0.72 6.34 -51.93 -0.33 0.39 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.33 3.84 9.06 -39.29 -0.36 3.49 16 30 H 0.36 5.50 6.72 -39.29 -0.26 5.23 16 31 H 0.18 3.66 5.18 -52.49 -0.27 3.39 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.17 2.05 8.06 -52.48 -0.42 1.63 16 36 H 0.02 0.38 4.31 -51.93 -0.22 0.16 16 37 H 0.08 1.60 6.44 -51.93 -0.33 1.26 16 38 H 0.04 0.65 6.20 -51.93 -0.32 0.33 16 39 H 0.08 2.11 6.21 -51.93 -0.32 1.79 16 40 H 0.01 0.23 5.57 -51.93 -0.29 -0.06 16 41 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 315.01 15.07 4.75 4.75 Total: -1.00 -30.96 315.01 -6.20 -37.15 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -6.15 Total: 9.84 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 0.46 Total: -7.59 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.24 Total: -60.68 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.96 -6.20 -37.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220911478.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.941 kcal (2) G-P(sol) polarization free energy of solvation -30.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds