Wall clock time and date at job start Mon Mar 30 2020 04:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47364 * 2 1 4 4 N 1.46896 * 109.47413 * 240.00201 * 2 1 3 5 5 C 1.53007 * 109.47144 * 119.99811 * 2 1 3 6 6 H 1.09002 * 109.46345 * 57.55677 * 5 2 1 7 7 C 1.50699 * 109.47024 * 297.55451 * 5 2 1 8 8 C 1.39864 * 126.04195 * 270.04732 * 7 5 2 9 9 N 1.30837 * 108.20674 * 180.02562 * 8 7 5 10 10 N 1.40087 * 108.19960 * 359.97438 * 9 8 7 11 11 C 1.46502 * 126.03446 * 180.02562 * 10 9 8 12 12 C 1.34943 * 107.92948 * 0.02562 * 10 9 8 13 13 N 1.46897 * 109.47260 * 177.55089 * 5 2 1 14 14 C 1.46901 * 110.99893 * 43.66004 * 13 5 2 15 15 C 1.46898 * 110.99921 * 167.61034 * 13 5 2 16 16 H 1.09001 * 109.47004 * 291.74639 * 15 13 5 17 17 C 1.52999 * 109.47019 * 51.74811 * 15 13 5 18 18 C 1.50701 * 109.47113 * 171.74813 * 15 13 5 19 19 H 1.08006 * 120.00049 * 0.02562 * 18 15 13 20 20 C 1.37872 * 120.00147 * 180.02562 * 18 15 13 21 21 N 1.31515 * 120.00000 * 359.97438 * 20 18 15 22 22 Si 1.86807 * 120.00287 * 179.97438 * 20 18 15 23 23 H 1.48495 * 109.46814 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46755 * 120.00187 * 22 20 18 25 25 H 1.48496 * 109.46958 * 239.99896 * 22 20 18 26 26 H 1.09003 * 109.47155 * 300.00349 * 1 2 3 27 27 H 1.09003 * 109.46868 * 59.99865 * 1 2 3 28 28 H 1.08994 * 109.47020 * 179.97438 * 1 2 3 29 29 H 1.00901 * 111.00207 * 62.61056 * 4 2 1 30 30 H 1.00900 * 111.00624 * 186.56813 * 4 2 1 31 31 H 1.07999 * 125.89840 * 0.02562 * 8 7 5 32 32 H 1.09006 * 109.47203 * 269.97862 * 11 10 9 33 33 H 1.08998 * 109.47271 * 29.97579 * 11 10 9 34 34 H 1.08998 * 109.47624 * 149.98002 * 11 10 9 35 35 H 1.08004 * 126.12818 * 179.73171 * 12 10 9 36 36 H 1.09005 * 109.47649 * 42.36452 * 14 13 5 37 37 H 1.09000 * 109.47426 * 162.36752 * 14 13 5 38 38 H 1.09002 * 109.47058 * 282.36669 * 14 13 5 39 39 H 1.08998 * 109.47024 * 184.85198 * 17 15 13 40 40 H 1.08997 * 109.47185 * 304.85514 * 17 15 13 41 41 H 1.09003 * 109.46814 * 64.85737 * 17 15 13 42 42 H 0.97004 * 120.00194 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0400 -0.7212 1.2493 6 1 1.6413 -1.7355 1.2714 7 6 1.5878 0.0234 2.4790 8 6 2.2857 1.0508 3.1220 9 7 1.5774 1.4458 4.1487 10 7 0.4042 0.6814 4.1911 11 6 -0.6667 0.8006 5.1836 12 6 0.4347 -0.1841 3.1562 13 7 3.5078 -0.7727 1.2201 14 6 4.0716 0.5186 0.8047 15 6 4.0460 -1.1876 2.5225 16 1 3.8626 -0.4040 3.2577 17 6 3.3581 -2.4786 2.9707 18 6 5.5292 -1.4249 2.4006 19 1 6.0227 -1.2814 1.4506 20 6 6.2561 -1.8251 3.5016 21 7 5.6552 -1.9994 4.6584 22 14 8.0945 -2.1200 3.3503 23 1 8.5249 -1.8558 1.9539 24 1 8.8194 -1.2089 4.2720 25 1 8.4006 -3.5291 3.7050 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.7317 -0.2108 -2.0380 30 1 3.0225 -0.8003 -1.1707 31 1 3.2438 1.4492 2.8228 32 1 -0.4596 0.1368 6.0232 33 1 -0.7201 1.8297 5.5388 34 1 -1.6173 0.5237 4.7277 35 1 -0.3232 -0.9145 2.9144 36 1 3.5307 1.3267 1.2971 37 1 5.1241 0.5625 1.0847 38 1 3.9785 0.6248 -0.2761 39 1 3.6940 -2.7398 3.9742 40 1 2.2780 -2.3319 2.9758 41 1 3.6122 -3.2839 2.2814 42 1 6.1666 -2.2813 5.4330 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220911478.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:40 Heat of formation + Delta-G solvation = 81.297824 kcal Electronic energy + Delta-G solvation = -21978.392196 eV Core-core repulsion = 18995.225268 eV Total energy + Delta-G solvation = -2983.166928 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.39606 -39.45967 -36.30444 -34.41850 -33.75204 -31.91845 -30.93375 -29.41203 -28.36404 -27.23125 -26.42137 -24.90868 -22.29773 -21.78935 -21.53317 -20.02620 -18.29043 -17.53077 -17.07647 -16.38766 -16.34860 -16.16915 -15.85231 -15.48065 -15.14370 -14.73674 -14.16751 -13.96566 -13.80796 -13.39759 -13.28412 -13.23637 -12.95383 -12.87181 -12.71074 -12.62220 -12.45521 -12.31021 -12.09716 -11.98476 -11.87809 -11.46972 -11.31865 -10.82946 -10.46529 -10.20606 -9.37082 -9.14081 -8.69763 -8.03918 -6.13496 1.02075 1.41156 1.43446 1.54677 1.78981 1.89444 2.45763 3.24597 3.48502 3.64583 3.91592 4.03488 4.18541 4.30833 4.40062 4.45667 4.54785 4.61612 4.68891 4.72759 4.73188 4.84841 4.96432 5.04038 5.11072 5.13152 5.16182 5.21642 5.31750 5.37645 5.48637 5.62745 5.71122 5.84953 5.90519 6.25838 6.36726 6.48335 6.54644 6.78259 6.85802 6.90932 7.04229 7.54755 9.01156 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.017833 B = 0.007542 C = 0.005890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.709651 B = 3711.545717 C = 4752.417929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.103 3.897 3 H 0.025 0.975 4 N -0.844 5.844 5 C 0.171 3.829 6 H 0.075 0.925 7 C -0.254 4.254 8 C 0.045 3.955 9 N -0.339 5.339 10 N -0.380 5.380 11 C 0.095 3.905 12 C 0.062 3.938 13 N -0.526 5.526 14 C 0.023 3.977 15 C 0.221 3.779 16 H -0.011 1.011 17 C -0.114 4.114 18 C -0.510 4.510 19 H 0.056 0.944 20 C 0.009 3.991 21 N -0.921 5.921 22 Si 0.953 3.047 23 H -0.266 1.266 24 H -0.286 1.286 25 H -0.284 1.284 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.343 0.657 30 H 0.348 0.652 31 H 0.165 0.835 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.203 0.797 36 H 0.027 0.973 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.031 0.969 41 H 0.021 0.979 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.180 5.085 -5.719 16.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.009 4.009 3 H 0.043 0.957 4 N -0.377 5.377 5 C 0.061 3.939 6 H 0.093 0.907 7 C -0.267 4.267 8 C -0.139 4.139 9 N -0.161 5.161 10 N -0.162 5.162 11 C -0.045 4.045 12 C -0.085 4.085 13 N -0.249 5.249 14 C -0.125 4.125 15 C 0.114 3.886 16 H 0.007 0.993 17 C -0.172 4.172 18 C -0.549 4.549 19 H 0.075 0.925 20 C -0.189 4.189 21 N -0.562 5.562 22 Si 0.780 3.220 23 H -0.190 1.190 24 H -0.212 1.212 25 H -0.210 1.210 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.156 0.844 30 H 0.163 0.837 31 H 0.182 0.818 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.139 0.861 35 H 0.220 0.780 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.040 0.960 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.622 4.889 -4.530 16.070 hybrid contribution 1.766 0.647 0.273 1.900 sum -12.857 5.535 -4.258 14.631 Atomic orbital electron populations 1.21728 0.93308 1.02386 1.01687 1.21266 0.96024 0.94042 0.89549 0.95734 1.58668 1.19340 1.56221 1.03438 1.20104 0.87748 0.96824 0.89236 0.90725 1.20859 0.97433 1.03781 1.04669 1.23862 0.99109 0.97260 0.93697 1.77219 0.96429 1.20309 1.22169 1.48733 1.16357 1.27839 1.23309 1.22158 0.87137 1.04663 0.90530 1.22684 0.99974 0.96388 0.89429 1.62346 1.04246 1.27352 1.30921 1.22504 0.99917 0.90397 0.99726 1.19041 0.92446 0.92315 0.84761 0.99327 1.21590 0.96604 0.98551 1.00492 1.21526 0.93892 1.44230 0.95234 0.92546 1.25652 1.02256 0.95824 0.95143 1.70075 1.36620 1.48737 1.00750 0.85577 0.80952 0.77370 0.78132 1.18995 1.21198 1.21017 0.92379 0.91902 0.91854 0.84445 0.83694 0.81780 0.90636 0.89172 0.86058 0.78005 0.95440 0.92788 0.91487 0.93598 0.95016 0.95964 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.15 71.98 0.66 -2.30 16 2 C 0.10 2.85 2.33 44.92 0.10 2.96 16 3 H 0.02 0.72 6.60 -2.39 -0.02 0.71 16 4 N -0.84 -22.18 9.19 -168.68 -1.55 -23.73 16 5 C 0.17 5.90 1.58 44.17 0.07 5.97 16 6 H 0.07 2.75 6.90 -2.39 -0.02 2.74 16 7 C -0.25 -8.83 2.72 -20.15 -0.05 -8.89 16 8 C 0.05 1.80 8.40 85.23 0.72 2.52 16 9 N -0.34 -13.14 12.58 -57.03 -0.72 -13.86 16 10 N -0.38 -11.41 4.01 -369.55 -1.48 -12.90 16 11 C 0.09 1.76 11.47 127.77 1.47 3.22 16 12 C 0.06 1.81 9.91 83.54 0.83 2.63 16 13 N -0.53 -21.50 4.08 -880.58 -3.59 -25.09 16 14 C 0.02 0.85 7.46 127.69 0.95 1.81 16 15 C 0.22 11.09 1.44 44.17 0.06 11.15 16 16 H -0.01 -0.59 5.07 -2.39 -0.01 -0.60 16 17 C -0.11 -5.74 8.47 71.98 0.61 -5.13 16 18 C -0.51 -28.20 7.64 25.60 0.20 -28.01 16 19 H 0.06 3.11 7.22 -2.91 -0.02 3.09 16 20 C 0.01 0.52 5.30 84.65 0.45 0.96 16 21 N -0.92 -54.68 11.37 21.45 0.24 -54.43 16 22 Si 0.95 44.86 29.54 68.60 2.03 46.89 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 25 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 26 H 0.06 1.29 6.34 -2.39 -0.02 1.27 16 27 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.34 7.15 9.06 -89.69 -0.81 6.34 16 30 H 0.35 10.19 6.72 -89.69 -0.60 9.59 16 31 H 0.17 6.94 5.18 -2.91 -0.02 6.93 16 32 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.20 4.19 8.06 -2.91 -0.02 4.17 16 36 H 0.03 0.99 4.31 -2.38 -0.01 0.98 16 37 H 0.05 2.25 6.44 -2.39 -0.02 2.24 16 38 H 0.07 2.11 6.20 -2.39 -0.01 2.09 16 39 H 0.05 2.58 6.21 -2.39 -0.01 2.57 16 40 H 0.03 1.41 5.57 -2.39 -0.01 1.39 16 41 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -68.24 315.01 0.62 -67.62 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: -0.37 Total: 28.59 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 6.06 Total: -13.10 kcal Atomic # 7 Polarization: -122.90 SS G_CDS: -7.10 Total: -130.00 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -68.24 0.62 -67.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220911478.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.919 kcal (2) G-P(sol) polarization free energy of solvation -68.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds