Wall clock time and date at job start Mon Mar 30 2020 04:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 5 5 C 1.46900 * 110.99890 * 274.99873 * 4 2 1 6 6 C 1.52996 * 109.47450 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.46989 * 300.00061 * 6 5 4 8 8 C 1.52999 * 109.47087 * 59.99996 * 6 5 4 9 9 C 1.53004 * 109.47493 * 180.02562 * 6 5 4 10 10 C 1.50698 * 109.47255 * 179.97438 * 9 6 5 11 11 H 1.08002 * 119.99871 * 359.97438 * 10 9 6 12 12 C 1.37874 * 120.00089 * 180.02562 * 10 9 6 13 13 N 1.31520 * 119.99870 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99938 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47517 * 89.99859 * 14 12 10 16 16 H 1.48502 * 109.47045 * 209.99597 * 14 12 10 17 17 H 1.48496 * 109.47309 * 329.99267 * 14 12 10 18 18 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 19 19 N 1.30524 * 126.34467 * 284.69658 * 18 2 1 20 20 N 1.28594 * 109.67157 * 179.82680 * 19 18 2 21 21 C 1.30527 * 109.67379 * 0.43851 * 20 19 18 22 22 N 1.35493 * 126.34641 * 104.99831 * 18 2 1 23 23 C 1.46500 * 126.98068 * 0.02562 * 22 18 2 24 24 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.00898 * 111.00476 * 38.95263 * 4 2 1 28 28 H 1.09002 * 109.47391 * 300.00224 * 5 4 2 29 29 H 1.09005 * 109.47266 * 59.99895 * 5 4 2 30 30 H 1.08997 * 109.47061 * 59.99881 * 7 6 5 31 31 H 1.09000 * 109.47330 * 180.02562 * 7 6 5 32 32 H 1.09005 * 109.47339 * 299.99835 * 7 6 5 33 33 H 1.08993 * 109.47164 * 60.00358 * 8 6 5 34 34 H 1.09000 * 109.46899 * 180.02562 * 8 6 5 35 35 H 1.09004 * 109.47028 * 299.99787 * 8 6 5 36 36 H 1.08995 * 109.46568 * 300.00030 * 9 6 5 37 37 H 1.09003 * 109.46678 * 59.99669 * 9 6 5 38 38 H 0.96996 * 119.99546 * 180.02562 * 13 12 10 39 39 H 1.07990 * 126.34825 * 179.73477 * 21 20 19 40 40 H 1.08998 * 109.47522 * 89.99553 * 23 22 18 41 41 H 1.08999 * 109.46666 * 210.00202 * 23 22 18 42 42 H 1.09003 * 109.46786 * 329.98926 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2225 2.3469 6 6 2.5961 -0.5328 3.5742 7 6 1.6471 -1.6892 3.8954 8 6 3.9934 -1.0850 3.2852 9 6 2.6609 0.4201 4.7695 10 6 3.1663 -0.3241 5.9785 11 1 3.4159 -1.3721 5.9021 12 6 3.3090 0.3325 7.1824 13 7 3.0046 1.6086 7.2755 14 14 3.9361 -0.5899 8.6808 15 1 5.4171 -0.4947 8.7368 16 1 3.3550 0.0085 9.9094 17 1 3.5349 -2.0166 8.5876 18 6 2.0324 -0.7104 -1.2304 19 7 2.0389 -2.0002 -1.4305 20 7 2.5344 -2.2560 -2.5892 21 6 2.8753 -1.1417 -3.1772 22 7 2.5664 -0.1290 -2.3316 23 6 2.7692 1.3036 -2.5612 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.4495 -1.4979 1.4101 28 1 2.7588 1.0462 2.1183 29 1 1.0870 0.6163 2.5525 30 1 1.6005 -2.3682 3.0440 31 1 2.0128 -2.2271 4.7701 32 1 0.6516 -1.2958 4.1013 33 1 4.6694 -0.2613 3.0565 34 1 4.3592 -1.6236 4.1595 35 1 3.9468 -1.7641 2.4339 36 1 3.3367 1.2441 4.5409 37 1 1.6652 0.8131 4.9751 38 1 3.1054 2.0706 8.1224 39 1 3.3209 -1.0447 -4.1561 40 1 3.7553 1.5938 -2.1987 41 1 2.6978 1.5142 -3.6283 42 1 2.0050 1.8688 -2.0275 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229680392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:04 Heat of formation + Delta-G solvation = 65.161961 kcal Electronic energy + Delta-G solvation = -20645.353752 eV Core-core repulsion = 17661.487120 eV Total energy + Delta-G solvation = -2983.866632 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.11852 -38.03185 -35.60829 -34.98849 -32.42857 -30.64656 -29.05022 -27.83223 -26.86626 -26.29128 -25.33741 -23.78470 -22.56360 -22.00764 -20.30031 -18.08803 -17.17155 -16.45308 -16.22884 -15.50729 -15.31347 -14.72455 -14.58043 -14.22846 -13.70705 -13.50629 -13.19318 -12.99206 -12.92606 -12.55667 -12.05139 -11.95941 -11.75005 -11.62881 -11.38387 -10.97954 -10.86567 -10.74576 -10.47346 -10.32323 -10.27973 -10.26883 -10.11871 -9.67728 -9.26515 -8.99049 -8.83269 -8.30800 -8.16820 -5.95772 -3.95445 1.75256 2.33985 2.92212 3.34704 3.41192 3.44619 4.12514 4.25706 4.41540 4.49468 4.57253 4.71092 4.79294 4.97554 5.03018 5.32569 5.40346 5.42199 5.56926 5.67433 5.77462 5.78161 5.94207 6.02040 6.15382 6.23421 6.33298 6.52508 6.70525 6.73231 6.81996 6.86778 7.18052 7.23288 7.28998 7.36532 7.62912 7.70528 7.85396 8.04751 8.49539 8.76560 9.09895 9.67501 11.15954 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.036187 B = 0.003775 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.567478 B = 7414.536398 C = 7552.266000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.170 3.830 3 H 0.090 0.910 4 N -0.672 5.672 5 C 0.071 3.929 6 C -0.057 4.057 7 C -0.131 4.131 8 C -0.117 4.117 9 C 0.034 3.966 10 C -0.506 4.506 11 H 0.059 0.941 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.887 3.113 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.274 1.274 18 C 0.199 3.801 19 N -0.281 5.281 20 N -0.300 5.300 21 C 0.138 3.862 22 N -0.478 5.478 23 C 0.072 3.928 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.353 0.647 28 H 0.065 0.935 29 H 0.028 0.972 30 H 0.036 0.964 31 H 0.064 0.936 32 H 0.041 0.959 33 H 0.037 0.963 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.014 0.986 37 H 0.013 0.987 38 H 0.258 0.742 39 H 0.215 0.785 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.985 1.685 -20.102 20.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.057 3.943 3 H 0.108 0.892 4 N -0.305 5.305 5 C -0.057 4.057 6 C -0.057 4.057 7 C -0.188 4.188 8 C -0.174 4.174 9 C -0.003 4.003 10 C -0.544 4.544 11 H 0.078 0.922 12 C -0.146 4.146 13 N -0.539 5.539 14 Si 0.716 3.284 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.199 1.199 18 C -0.069 4.069 19 N -0.120 5.120 20 N -0.139 5.139 21 C -0.149 4.149 22 N -0.170 5.170 23 C -0.072 4.072 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.174 0.826 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.032 0.968 37 H 0.031 0.969 38 H 0.068 0.932 39 H 0.231 0.769 40 H 0.102 0.898 41 H 0.110 0.890 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.521 0.427 -19.906 20.070 hybrid contribution -0.228 1.270 0.713 1.475 sum -2.749 1.697 -19.193 19.463 Atomic orbital electron populations 1.22476 0.95099 1.03489 1.02574 1.19704 0.92947 0.95874 0.85809 0.89156 1.60372 1.57289 1.10070 1.02756 1.22190 0.99001 0.94763 0.89770 1.20624 0.95010 0.96203 0.93913 1.21785 0.98606 0.97866 1.00551 1.21605 0.95793 0.99855 1.00163 1.19122 0.96845 0.93616 0.90715 1.21248 1.42709 0.96394 0.94072 0.92245 1.25006 0.95857 0.94845 0.98860 1.69967 1.49321 1.09004 1.25587 0.86666 0.78995 0.80089 0.82693 1.20802 1.21414 1.19891 1.24898 1.00154 0.90981 0.90883 1.74232 1.17769 1.10866 1.09157 1.74262 1.14335 1.23058 1.02241 1.26353 1.05248 0.83799 0.99529 1.46178 1.46597 1.09260 1.14976 1.22105 1.04088 0.76987 1.03980 0.90934 0.92438 0.91230 0.82601 0.91621 0.95372 0.94526 0.91659 0.94033 0.94352 0.92642 0.93742 0.96754 0.96863 0.93205 0.76875 0.89764 0.89050 0.89133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.84 9.14 37.16 0.34 -1.50 16 2 C 0.17 2.04 2.90 -68.86 -0.20 1.84 16 3 H 0.09 0.95 6.89 -51.93 -0.36 0.59 16 4 N -0.67 -9.87 5.44 -107.95 -0.59 -10.45 16 5 C 0.07 1.16 4.44 -3.83 -0.02 1.14 16 6 C -0.06 -1.13 0.60 -154.51 -0.09 -1.22 16 7 C -0.13 -2.45 7.89 37.16 0.29 -2.16 16 8 C -0.12 -2.31 8.06 37.16 0.30 -2.01 16 9 C 0.03 0.86 4.04 -27.88 -0.11 0.74 16 10 C -0.51 -13.79 7.65 -34.44 -0.26 -14.05 16 11 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 12 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 13 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 14 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 18 C 0.20 2.62 6.87 -154.98 -1.07 1.55 16 19 N -0.28 -4.54 12.21 32.80 0.40 -4.14 16 20 N -0.30 -4.54 12.21 29.69 0.36 -4.17 16 21 C 0.14 1.46 12.74 -89.94 -1.15 0.31 16 22 N -0.48 -4.78 3.15 -122.69 -0.39 -5.17 16 23 C 0.07 0.37 10.84 59.85 0.65 1.02 16 24 H 0.07 0.74 7.45 -51.93 -0.39 0.36 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 27 H 0.35 5.32 6.51 -39.29 -0.26 5.07 16 28 H 0.07 1.08 8.06 -51.93 -0.42 0.66 16 29 H 0.03 0.45 7.44 -51.93 -0.39 0.06 16 30 H 0.04 0.61 6.57 -51.93 -0.34 0.26 16 31 H 0.06 1.34 6.61 -51.93 -0.34 0.99 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 1.17 6.62 -51.93 -0.34 0.83 16 35 H 0.04 0.83 7.60 -51.93 -0.39 0.43 16 36 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.21 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.09 0.38 7.46 -51.93 -0.39 0.00 16 LS Contribution 336.19 15.07 5.07 5.07 Total: -1.00 -33.51 336.19 -7.69 -41.20 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.85 Total: -0.09 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -1.41 Total: -12.90 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.53 Total: -49.88 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.51 -7.69 -41.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229680392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.364 kcal (2) G-P(sol) polarization free energy of solvation -33.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds