Wall clock time and date at job start Mon Mar 30 2020 04:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 5 5 C 1.46900 * 110.99890 * 274.99873 * 4 2 1 6 6 C 1.52996 * 109.47450 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.46989 * 300.00061 * 6 5 4 8 8 C 1.52999 * 109.47087 * 59.99996 * 6 5 4 9 9 C 1.53004 * 109.47493 * 180.02562 * 6 5 4 10 10 C 1.50698 * 109.47255 * 179.97438 * 9 6 5 11 11 H 1.08002 * 119.99871 * 359.97438 * 10 9 6 12 12 C 1.37874 * 120.00089 * 180.02562 * 10 9 6 13 13 N 1.31520 * 119.99870 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99938 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47517 * 89.99859 * 14 12 10 16 16 H 1.48502 * 109.47045 * 209.99597 * 14 12 10 17 17 H 1.48496 * 109.47309 * 329.99267 * 14 12 10 18 18 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 19 19 N 1.30524 * 126.34467 * 284.69658 * 18 2 1 20 20 N 1.28594 * 109.67157 * 179.82680 * 19 18 2 21 21 C 1.30527 * 109.67379 * 0.43851 * 20 19 18 22 22 N 1.35493 * 126.34641 * 104.99831 * 18 2 1 23 23 C 1.46500 * 126.98068 * 0.02562 * 22 18 2 24 24 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.00898 * 111.00476 * 38.95263 * 4 2 1 28 28 H 1.09002 * 109.47391 * 300.00224 * 5 4 2 29 29 H 1.09005 * 109.47266 * 59.99895 * 5 4 2 30 30 H 1.08997 * 109.47061 * 59.99881 * 7 6 5 31 31 H 1.09000 * 109.47330 * 180.02562 * 7 6 5 32 32 H 1.09005 * 109.47339 * 299.99835 * 7 6 5 33 33 H 1.08993 * 109.47164 * 60.00358 * 8 6 5 34 34 H 1.09000 * 109.46899 * 180.02562 * 8 6 5 35 35 H 1.09004 * 109.47028 * 299.99787 * 8 6 5 36 36 H 1.08995 * 109.46568 * 300.00030 * 9 6 5 37 37 H 1.09003 * 109.46678 * 59.99669 * 9 6 5 38 38 H 0.96996 * 119.99546 * 180.02562 * 13 12 10 39 39 H 1.07990 * 126.34825 * 179.73477 * 21 20 19 40 40 H 1.08998 * 109.47522 * 89.99553 * 23 22 18 41 41 H 1.08999 * 109.46666 * 210.00202 * 23 22 18 42 42 H 1.09003 * 109.46786 * 329.98926 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2225 2.3469 6 6 2.5961 -0.5328 3.5742 7 6 1.6471 -1.6892 3.8954 8 6 3.9934 -1.0850 3.2852 9 6 2.6609 0.4201 4.7695 10 6 3.1663 -0.3241 5.9785 11 1 3.4159 -1.3721 5.9021 12 6 3.3090 0.3325 7.1824 13 7 3.0046 1.6086 7.2755 14 14 3.9361 -0.5899 8.6808 15 1 5.4171 -0.4947 8.7368 16 1 3.3550 0.0085 9.9094 17 1 3.5349 -2.0166 8.5876 18 6 2.0324 -0.7104 -1.2304 19 7 2.0389 -2.0002 -1.4305 20 7 2.5344 -2.2560 -2.5892 21 6 2.8753 -1.1417 -3.1772 22 7 2.5664 -0.1290 -2.3316 23 6 2.7692 1.3036 -2.5612 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.4495 -1.4979 1.4101 28 1 2.7588 1.0462 2.1183 29 1 1.0870 0.6163 2.5525 30 1 1.6005 -2.3682 3.0440 31 1 2.0128 -2.2271 4.7701 32 1 0.6516 -1.2958 4.1013 33 1 4.6694 -0.2613 3.0565 34 1 4.3592 -1.6236 4.1595 35 1 3.9468 -1.7641 2.4339 36 1 3.3367 1.2441 4.5409 37 1 1.6652 0.8131 4.9751 38 1 3.1054 2.0706 8.1224 39 1 3.3209 -1.0447 -4.1561 40 1 3.7553 1.5938 -2.1987 41 1 2.6978 1.5142 -3.6283 42 1 2.0050 1.8688 -2.0275 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229680392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:03 Heat of formation + Delta-G solvation = 44.560267 kcal Electronic energy + Delta-G solvation = -20646.247109 eV Core-core repulsion = 17661.487120 eV Total energy + Delta-G solvation = -2984.759988 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.98955 -39.41677 -36.89367 -35.81769 -34.43214 -31.82666 -30.08230 -28.77502 -28.38033 -27.89242 -26.74041 -25.04003 -23.98828 -23.03486 -21.21411 -19.61002 -18.31039 -18.01513 -17.25704 -16.69362 -16.44994 -16.22772 -15.77069 -15.42293 -14.88482 -14.61174 -14.39166 -14.24236 -13.89223 -13.70332 -13.68384 -13.37772 -12.98135 -12.77661 -12.68884 -12.57089 -12.43982 -12.32120 -12.19345 -12.12289 -11.89791 -11.37569 -11.22148 -11.01459 -10.85503 -10.76868 -10.48119 -10.17371 -9.32774 -8.12672 -6.18488 0.93376 1.41593 1.42047 1.52483 1.65388 1.98277 2.45044 3.18555 3.21608 3.41084 3.78943 3.93851 3.98010 4.07763 4.17759 4.27162 4.40336 4.41254 4.52336 4.63336 4.69598 4.71520 4.81159 4.89547 4.96701 4.99231 5.08740 5.15479 5.22197 5.23609 5.29244 5.53452 5.55793 5.59130 5.66742 5.88434 5.94575 5.98367 6.11209 6.39551 6.43779 6.96199 7.48502 7.85453 8.99435 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.036187 B = 0.003775 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.567478 B = 7414.536398 C = 7552.266000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.172 3.828 3 H 0.108 0.892 4 N -0.678 5.678 5 C 0.086 3.914 6 C -0.054 4.054 7 C -0.123 4.123 8 C -0.106 4.106 9 C 0.042 3.958 10 C -0.515 4.515 11 H 0.062 0.938 12 C -0.001 4.001 13 N -0.935 5.935 14 Si 0.951 3.049 15 H -0.277 1.277 16 H -0.285 1.285 17 H -0.266 1.266 18 C 0.190 3.810 19 N -0.327 5.327 20 N -0.354 5.354 21 C 0.156 3.844 22 N -0.474 5.474 23 C 0.062 3.938 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.350 0.650 28 H 0.065 0.935 29 H 0.033 0.967 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.042 0.958 33 H 0.032 0.968 34 H 0.036 0.964 35 H 0.057 0.943 36 H -0.012 1.012 37 H -0.010 1.010 38 H 0.260 0.740 39 H 0.260 0.740 40 H 0.090 0.910 41 H 0.124 0.876 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.837 2.013 -21.705 21.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.059 3.941 3 H 0.126 0.874 4 N -0.311 5.311 5 C -0.043 4.043 6 C -0.054 4.054 7 C -0.181 4.181 8 C -0.164 4.164 9 C 0.005 3.995 10 C -0.553 4.553 11 H 0.080 0.920 12 C -0.198 4.198 13 N -0.577 5.577 14 Si 0.777 3.223 15 H -0.203 1.203 16 H -0.211 1.211 17 H -0.190 1.190 18 C -0.081 4.081 19 N -0.167 5.167 20 N -0.193 5.193 21 C -0.132 4.132 22 N -0.165 5.165 23 C -0.079 4.079 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.075 0.925 27 H 0.171 0.829 28 H 0.084 0.916 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.007 0.993 37 H 0.008 0.992 38 H 0.068 0.932 39 H 0.276 0.724 40 H 0.108 0.892 41 H 0.142 0.858 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.370 0.761 -21.528 21.671 hybrid contribution -0.251 1.225 1.107 1.670 sum -2.621 1.985 -20.420 20.683 Atomic orbital electron populations 1.22388 0.93922 1.02960 1.03580 1.19788 0.93853 0.96205 0.84212 0.87373 1.60264 1.58027 1.09862 1.02923 1.21882 0.99016 0.94373 0.89031 1.20485 0.95650 0.95750 0.93563 1.21691 0.98174 0.97621 1.00598 1.21488 0.95547 0.99605 0.99732 1.18983 0.94508 0.93653 0.92375 1.21625 1.41991 0.96654 0.95031 0.92031 1.25836 0.96273 0.95651 1.01991 1.70089 1.50705 1.10523 1.26364 0.85646 0.78477 0.79116 0.79032 1.20250 1.21117 1.18987 1.24947 1.00534 0.90637 0.91933 1.74109 1.19449 1.12822 1.10287 1.74147 1.16726 1.25623 1.02784 1.27183 1.02816 0.82822 1.00403 1.46422 1.45307 1.11004 1.13746 1.22507 1.04784 0.74156 1.06472 0.90693 0.90585 0.92524 0.82948 0.91630 0.94852 0.92158 0.93720 0.93846 0.94865 0.94479 0.92426 0.99342 0.99159 0.93165 0.72448 0.89153 0.85806 0.88114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 9.14 71.98 0.66 -2.57 16 2 C 0.17 3.81 2.90 44.17 0.13 3.94 16 3 H 0.11 1.98 6.89 -2.39 -0.02 1.97 16 4 N -0.68 -19.07 5.44 -495.44 -2.69 -21.76 16 5 C 0.09 2.73 4.44 86.30 0.38 3.11 16 6 C -0.05 -2.13 0.60 -52.18 -0.03 -2.16 16 7 C -0.12 -4.58 7.89 71.98 0.57 -4.01 16 8 C -0.11 -4.19 8.06 71.98 0.58 -3.61 16 9 C 0.04 2.15 4.04 29.85 0.12 2.27 16 10 C -0.51 -28.45 7.65 25.60 0.20 -28.25 16 11 H 0.06 3.32 5.68 -2.91 -0.02 3.30 16 12 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 13 N -0.94 -56.44 13.29 21.45 0.28 -56.16 16 14 Si 0.95 44.60 29.54 68.60 2.03 46.62 16 15 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 16 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 18 C 0.19 4.69 6.87 137.98 0.95 5.64 16 19 N -0.33 -10.44 12.21 -50.15 -0.61 -11.06 16 20 N -0.35 -10.44 12.21 -59.99 -0.73 -11.17 16 21 C 0.16 2.91 12.74 180.11 2.30 5.21 16 22 N -0.47 -8.21 3.15 -542.07 -1.71 -9.92 16 23 C 0.06 0.41 10.84 127.77 1.38 1.79 16 24 H 0.07 1.40 7.45 -2.39 -0.02 1.38 16 25 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 27 H 0.35 10.19 6.51 -89.70 -0.58 9.61 16 28 H 0.07 2.09 8.06 -2.39 -0.02 2.07 16 29 H 0.03 1.03 7.44 -2.38 -0.02 1.01 16 30 H 0.06 1.94 6.57 -2.39 -0.02 1.92 16 31 H 0.04 1.82 6.61 -2.39 -0.02 1.80 16 32 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.04 1.56 6.62 -2.39 -0.02 1.55 16 35 H 0.06 2.10 7.60 -2.39 -0.02 2.09 16 36 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 37 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 38 H 0.26 14.85 8.31 -92.71 -0.77 14.07 16 39 H 0.26 1.91 8.06 -2.92 -0.02 1.89 16 40 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 42 H 0.10 0.49 7.46 -2.39 -0.02 0.47 16 Total: -1.00 -74.42 336.19 4.68 -69.75 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.42 Total: 11.93 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: 7.69 Total: -18.22 kcal Atomic # 7 Polarization: -104.61 SS G_CDS: -5.46 Total: -110.07 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -74.42 4.68 -69.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229680392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.306 kcal (2) G-P(sol) polarization free energy of solvation -74.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds