Wall clock time and date at job start Mon Mar 30 2020 04:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35494 * 126.97935 * 2 1 4 4 N 1.30526 * 107.30545 * 179.83284 * 3 2 1 5 5 N 1.28600 * 109.67197 * 0.43817 * 4 3 2 6 6 C 1.30517 * 109.67250 * 359.72320 * 5 4 3 7 7 C 1.50696 * 126.34429 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47073 * 270.03722 * 7 6 5 9 9 N 1.46894 * 109.47276 * 180.02562 * 8 7 6 10 10 C 1.46896 * 111.00273 * 180.02562 * 9 8 7 11 11 C 1.53006 * 109.47305 * 179.97438 * 10 9 8 12 12 C 1.52993 * 109.46898 * 299.99694 * 11 10 9 13 13 C 1.52997 * 109.46864 * 60.00203 * 11 10 9 14 14 C 1.53005 * 109.46850 * 179.97438 * 11 10 9 15 15 C 1.50703 * 109.46870 * 180.02562 * 14 11 10 16 16 H 1.08002 * 119.99974 * 0.02562 * 15 14 11 17 17 C 1.37874 * 119.99769 * 180.02562 * 15 14 11 18 18 N 1.31514 * 119.99623 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00234 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47286 * 89.99975 * 19 17 15 21 21 H 1.48505 * 109.46904 * 210.00215 * 19 17 15 22 22 H 1.48501 * 109.47187 * 329.99726 * 19 17 15 23 23 H 1.09002 * 109.47391 * 269.68706 * 1 2 3 24 24 H 1.09001 * 109.46813 * 149.68762 * 1 2 3 25 25 H 1.09004 * 109.47041 * 29.68889 * 1 2 3 26 26 H 1.07996 * 126.34608 * 359.97438 * 3 2 1 27 27 H 1.09001 * 109.47593 * 30.04127 * 7 6 5 28 28 H 1.09007 * 109.46914 * 150.04200 * 7 6 5 29 29 H 1.08998 * 109.47077 * 299.99870 * 8 7 6 30 30 H 1.09001 * 109.47068 * 60.00033 * 8 7 6 31 31 H 1.00900 * 111.00302 * 56.04179 * 9 8 7 32 32 H 1.09004 * 109.46854 * 299.99751 * 10 9 8 33 33 H 1.08993 * 109.47410 * 59.99712 * 10 9 8 34 34 H 1.08996 * 109.47313 * 60.00533 * 12 11 10 35 35 H 1.09004 * 109.46668 * 180.02562 * 12 11 10 36 36 H 1.08998 * 109.47693 * 299.99740 * 12 11 10 37 37 H 1.08994 * 109.47481 * 59.99897 * 13 11 10 38 38 H 1.09005 * 109.47257 * 180.02562 * 13 11 10 39 39 H 1.09001 * 109.46861 * 299.99717 * 13 11 10 40 40 H 1.09004 * 109.47294 * 299.99924 * 14 11 10 41 41 H 1.09002 * 109.46876 * 60.00222 * 14 11 10 42 42 H 0.97003 * 119.99819 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6430 0.0036 5 7 3.5091 -0.6430 -0.0034 6 6 2.2801 -1.0824 -0.0059 7 6 1.8477 -2.5260 -0.0143 8 6 1.7022 -3.0063 -1.4597 9 7 1.2802 -4.4133 -1.4679 10 6 1.1305 -4.9100 -2.8422 11 6 0.6916 -6.3754 -2.8100 12 6 1.7469 -7.2078 -2.0791 13 6 -0.6466 -6.4910 -2.0774 14 6 0.5351 -6.8925 -4.2415 15 6 0.1022 -8.3356 -4.2098 16 1 -0.0468 -8.8340 -3.2633 17 6 -0.1036 -9.0197 -5.3891 18 7 -0.4809 -10.2792 -5.3613 19 14 0.1548 -8.1579 -7.0260 20 1 1.5641 -8.3322 -7.4603 21 1 -0.7531 -8.7458 -8.0436 22 1 -0.1414 -6.7105 -6.8757 23 1 -0.3634 -0.0056 1.0276 24 1 -0.3633 -0.8872 -0.5187 25 1 -0.3633 0.8928 -0.5090 26 1 1.9701 2.1169 -0.0004 27 1 2.5957 -3.1323 0.4966 28 1 0.8905 -2.6216 0.4985 29 1 0.9542 -2.4000 -1.9704 30 1 2.6593 -2.9107 -1.9724 31 1 0.4275 -4.5382 -0.9431 32 1 0.3789 -4.3166 -3.3631 33 1 2.0838 -4.8280 -3.3641 34 1 1.8580 -6.8394 -1.0593 35 1 1.4344 -8.2518 -2.0566 36 1 2.7002 -7.1255 -2.6011 37 1 -1.3983 -5.8979 -2.5981 38 1 -0.9591 -7.5350 -2.0540 39 1 -0.5355 -6.1224 -1.0576 40 1 -0.2170 -6.2993 -4.7619 41 1 1.4882 -6.8100 -4.7638 42 1 -0.6253 -10.7606 -6.1910 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229695754.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:58 Heat of formation + Delta-G solvation = 64.075842 kcal Electronic energy + Delta-G solvation = -20060.224402 eV Core-core repulsion = 17076.310673 eV Total energy + Delta-G solvation = -2983.913729 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.36918 -37.97531 -35.72605 -35.04172 -32.66822 -31.75877 -28.97865 -28.01964 -27.51308 -26.40570 -25.23574 -23.09956 -22.64406 -21.74156 -20.88516 -17.93156 -17.39853 -16.83761 -16.66224 -15.98867 -15.31585 -15.19963 -14.39187 -14.24381 -13.91269 -13.78110 -13.64436 -13.23490 -12.74606 -12.64125 -12.49096 -12.20631 -11.78950 -11.74388 -11.52289 -11.07539 -10.96124 -10.86430 -10.57015 -10.52206 -10.51397 -10.39071 -9.81390 -9.71260 -9.49872 -9.28031 -8.92065 -8.50780 -8.28776 -6.01092 -3.97369 1.50401 2.14575 2.64871 3.31623 3.39205 3.41973 3.85398 4.12940 4.27118 4.47299 4.52990 4.57248 4.61903 4.83765 4.89748 5.13158 5.22755 5.31973 5.45874 5.53000 5.61054 5.74685 5.82743 5.86530 5.90071 6.09189 6.21052 6.37438 6.52433 6.56692 6.65095 6.78592 7.03363 7.08727 7.16006 7.23190 7.30798 7.42575 7.53657 7.84040 8.49554 8.58465 9.04737 9.62065 11.12019 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.035812 B = 0.003239 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.669252 B = 8642.157023 C = 8778.479584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.478 5.478 3 C 0.143 3.857 4 N -0.298 5.298 5 N -0.291 5.291 6 C 0.185 3.815 7 C -0.033 4.033 8 C 0.066 3.934 9 N -0.683 5.683 10 C 0.069 3.931 11 C -0.049 4.049 12 C -0.119 4.119 13 C -0.130 4.130 14 C -0.005 4.005 15 C -0.507 4.507 16 H 0.078 0.922 17 C 0.065 3.935 18 N -0.906 5.906 19 Si 0.876 3.124 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.268 1.268 23 H 0.084 0.916 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.217 0.783 27 H 0.111 0.889 28 H 0.080 0.920 29 H 0.022 0.978 30 H 0.079 0.921 31 H 0.339 0.661 32 H 0.023 0.977 33 H 0.068 0.932 34 H 0.045 0.955 35 H 0.060 0.940 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.070 0.930 39 H 0.035 0.965 40 H 0.012 0.988 41 H 0.011 0.989 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.466 21.131 11.400 24.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.169 5.169 3 C -0.144 4.144 4 N -0.137 5.137 5 N -0.131 5.131 6 C -0.083 4.083 7 C -0.073 4.073 8 C -0.065 4.065 9 N -0.315 5.315 10 C -0.060 4.060 11 C -0.050 4.050 12 C -0.176 4.176 13 C -0.188 4.188 14 C -0.042 4.042 15 C -0.545 4.545 16 H 0.096 0.904 17 C -0.136 4.136 18 N -0.545 5.545 19 Si 0.703 3.297 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.193 1.193 23 H 0.102 0.898 24 H 0.111 0.889 25 H 0.111 0.889 26 H 0.234 0.766 27 H 0.129 0.871 28 H 0.099 0.901 29 H 0.040 0.960 30 H 0.098 0.902 31 H 0.158 0.842 32 H 0.041 0.959 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.089 0.911 39 H 0.054 0.946 40 H 0.030 0.970 41 H 0.029 0.971 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.625 20.762 11.361 23.675 hybrid contribution -2.272 1.040 -1.360 2.845 sum -1.647 21.801 10.001 24.042 Atomic orbital electron populations 1.22142 0.75315 1.05480 1.04298 1.46244 1.09246 1.06879 1.54580 1.26430 0.87333 0.94917 1.05737 1.74268 1.18092 1.03456 1.17898 1.74310 1.17081 1.03024 1.18666 1.24922 0.87239 0.92352 1.03781 1.20052 1.03049 0.85105 0.99071 1.21855 1.01093 0.89334 0.94214 1.60476 1.38882 1.16272 1.15828 1.22147 0.99945 0.96481 0.87427 1.20430 0.95049 0.91441 0.98037 1.21620 0.97359 1.00137 0.98463 1.21781 0.96558 1.03087 0.97334 1.19633 0.96032 0.97303 0.91273 1.21133 1.44822 0.94128 0.94437 0.90389 1.25015 0.94917 0.94680 0.98973 1.69910 1.47924 1.09314 1.27365 0.86850 0.78218 0.80348 0.84243 1.20385 1.21580 1.19254 0.89769 0.88920 0.88861 0.76630 0.87081 0.90112 0.95959 0.90216 0.84181 0.95889 0.91371 0.93574 0.92100 0.94133 0.94216 0.91082 0.94579 0.97006 0.97105 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.25 10.89 59.85 0.65 0.90 16 2 N -0.48 -3.85 3.15 -122.69 -0.39 -4.24 16 3 C 0.14 1.26 12.74 -89.94 -1.15 0.12 16 4 N -0.30 -3.99 12.21 29.69 0.36 -3.63 16 5 N -0.29 -4.16 12.21 32.79 0.40 -3.76 16 6 C 0.18 2.01 7.28 -154.99 -1.13 0.88 16 7 C -0.03 -0.30 5.65 -27.88 -0.16 -0.46 16 8 C 0.07 0.71 5.67 -3.83 -0.02 0.69 16 9 N -0.68 -8.58 5.71 -113.78 -0.65 -9.23 16 10 C 0.07 1.07 4.65 -3.82 -0.02 1.05 16 11 C -0.05 -0.91 0.60 -154.51 -0.09 -1.01 16 12 C -0.12 -2.21 8.07 37.15 0.30 -1.91 16 13 C -0.13 -2.25 7.89 37.16 0.29 -1.96 16 14 C 0.00 -0.11 3.11 -27.88 -0.09 -0.19 16 15 C -0.51 -13.81 8.20 -34.44 -0.28 -14.10 16 16 H 0.08 2.26 5.92 -52.49 -0.31 1.95 16 17 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 18 N -0.91 -27.58 13.96 55.43 0.77 -26.81 16 19 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 23 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 24 H 0.09 0.31 7.81 -51.93 -0.41 -0.09 16 25 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 26 H 0.22 0.88 8.06 -52.49 -0.42 0.46 16 27 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.08 0.55 7.85 -51.93 -0.41 0.14 16 29 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.34 3.84 6.77 -39.29 -0.27 3.57 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.05 0.76 7.60 -51.93 -0.39 0.37 16 35 H 0.06 1.27 6.62 -51.93 -0.34 0.93 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 39 H 0.04 0.51 6.57 -51.93 -0.34 0.17 16 40 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 41 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 335.87 15.07 5.06 5.06 Total: -1.00 -33.90 335.87 -7.87 -41.77 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -6.97 Total: -1.89 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -1.79 Total: -14.23 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.50 Total: -47.67 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.90 -7.87 -41.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229695754.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.841 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds