Wall clock time and date at job start Mon Mar 30 2020 04:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35494 * 126.97935 * 2 1 4 4 N 1.30526 * 107.30545 * 179.83284 * 3 2 1 5 5 N 1.28600 * 109.67197 * 0.43817 * 4 3 2 6 6 C 1.30517 * 109.67250 * 359.72320 * 5 4 3 7 7 C 1.50696 * 126.34429 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47073 * 270.03722 * 7 6 5 9 9 N 1.46894 * 109.47276 * 180.02562 * 8 7 6 10 10 C 1.46896 * 111.00273 * 180.02562 * 9 8 7 11 11 C 1.53006 * 109.47305 * 179.97438 * 10 9 8 12 12 C 1.52993 * 109.46898 * 299.99694 * 11 10 9 13 13 C 1.52997 * 109.46864 * 60.00203 * 11 10 9 14 14 C 1.53005 * 109.46850 * 179.97438 * 11 10 9 15 15 C 1.50703 * 109.46870 * 180.02562 * 14 11 10 16 16 H 1.08002 * 119.99974 * 0.02562 * 15 14 11 17 17 C 1.37874 * 119.99769 * 180.02562 * 15 14 11 18 18 N 1.31514 * 119.99623 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00234 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47286 * 89.99975 * 19 17 15 21 21 H 1.48505 * 109.46904 * 210.00215 * 19 17 15 22 22 H 1.48501 * 109.47187 * 329.99726 * 19 17 15 23 23 H 1.09002 * 109.47391 * 269.68706 * 1 2 3 24 24 H 1.09001 * 109.46813 * 149.68762 * 1 2 3 25 25 H 1.09004 * 109.47041 * 29.68889 * 1 2 3 26 26 H 1.07996 * 126.34608 * 359.97438 * 3 2 1 27 27 H 1.09001 * 109.47593 * 30.04127 * 7 6 5 28 28 H 1.09007 * 109.46914 * 150.04200 * 7 6 5 29 29 H 1.08998 * 109.47077 * 299.99870 * 8 7 6 30 30 H 1.09001 * 109.47068 * 60.00033 * 8 7 6 31 31 H 1.00900 * 111.00302 * 56.04179 * 9 8 7 32 32 H 1.09004 * 109.46854 * 299.99751 * 10 9 8 33 33 H 1.08993 * 109.47410 * 59.99712 * 10 9 8 34 34 H 1.08996 * 109.47313 * 60.00533 * 12 11 10 35 35 H 1.09004 * 109.46668 * 180.02562 * 12 11 10 36 36 H 1.08998 * 109.47693 * 299.99740 * 12 11 10 37 37 H 1.08994 * 109.47481 * 59.99897 * 13 11 10 38 38 H 1.09005 * 109.47257 * 180.02562 * 13 11 10 39 39 H 1.09001 * 109.46861 * 299.99717 * 13 11 10 40 40 H 1.09004 * 109.47294 * 299.99924 * 14 11 10 41 41 H 1.09002 * 109.46876 * 60.00222 * 14 11 10 42 42 H 0.97003 * 119.99819 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6430 0.0036 5 7 3.5091 -0.6430 -0.0034 6 6 2.2801 -1.0824 -0.0059 7 6 1.8477 -2.5260 -0.0143 8 6 1.7022 -3.0063 -1.4597 9 7 1.2802 -4.4133 -1.4679 10 6 1.1305 -4.9100 -2.8422 11 6 0.6916 -6.3754 -2.8100 12 6 1.7469 -7.2078 -2.0791 13 6 -0.6466 -6.4910 -2.0774 14 6 0.5351 -6.8925 -4.2415 15 6 0.1022 -8.3356 -4.2098 16 1 -0.0468 -8.8340 -3.2633 17 6 -0.1036 -9.0197 -5.3891 18 7 -0.4809 -10.2792 -5.3613 19 14 0.1548 -8.1579 -7.0260 20 1 1.5641 -8.3322 -7.4603 21 1 -0.7531 -8.7458 -8.0436 22 1 -0.1414 -6.7105 -6.8757 23 1 -0.3634 -0.0056 1.0276 24 1 -0.3633 -0.8872 -0.5187 25 1 -0.3633 0.8928 -0.5090 26 1 1.9701 2.1169 -0.0004 27 1 2.5957 -3.1323 0.4966 28 1 0.8905 -2.6216 0.4985 29 1 0.9542 -2.4000 -1.9704 30 1 2.6593 -2.9107 -1.9724 31 1 0.4275 -4.5382 -0.9431 32 1 0.3789 -4.3166 -3.3631 33 1 2.0838 -4.8280 -3.3641 34 1 1.8580 -6.8394 -1.0593 35 1 1.4344 -8.2518 -2.0566 36 1 2.7002 -7.1255 -2.6011 37 1 -1.3983 -5.8979 -2.5981 38 1 -0.9591 -7.5350 -2.0540 39 1 -0.5355 -6.1224 -1.0576 40 1 -0.2170 -6.2993 -4.7619 41 1 1.4882 -6.8100 -4.7638 42 1 -0.6253 -10.7606 -6.1910 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229695754.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:58 Heat of formation + Delta-G solvation = 42.369988 kcal Electronic energy + Delta-G solvation = -20061.165639 eV Core-core repulsion = 17076.310673 eV Total energy + Delta-G solvation = -2984.854966 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.08273 -39.31406 -36.72022 -35.83698 -34.47005 -32.96756 -30.12500 -29.19590 -28.38346 -27.88445 -26.53566 -24.40537 -23.33873 -23.17135 -21.59823 -19.44475 -18.85733 -17.97381 -17.41618 -16.85219 -16.42770 -16.13256 -15.93372 -15.55355 -15.06574 -14.88022 -14.40242 -14.27874 -14.07872 -13.88691 -13.72588 -13.36374 -13.10334 -12.76330 -12.70363 -12.58494 -12.49678 -12.23155 -12.18457 -12.02129 -11.70606 -11.34993 -11.29487 -11.09000 -10.98971 -10.82328 -10.69481 -10.23388 -9.30729 -8.21201 -6.21192 0.84725 1.36396 1.37204 1.47968 1.62756 1.86658 2.39718 3.03178 3.14074 3.62399 3.77643 3.89692 3.95600 4.05978 4.18030 4.22214 4.35754 4.38197 4.43146 4.51482 4.68785 4.74733 4.80089 4.85133 4.93389 4.99433 5.07266 5.09481 5.12159 5.22089 5.22344 5.39850 5.47774 5.55395 5.63740 5.78710 5.84089 5.97852 6.05218 6.42678 6.56911 6.86530 7.41378 7.74374 8.95037 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.035812 B = 0.003239 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.669252 B = 8642.157023 C = 8778.479584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.473 5.473 3 C 0.159 3.841 4 N -0.354 5.354 5 N -0.344 5.344 6 C 0.180 3.820 7 C -0.023 4.023 8 C 0.074 3.926 9 N -0.683 5.683 10 C 0.081 3.919 11 C -0.049 4.049 12 C -0.111 4.111 13 C -0.124 4.124 14 C -0.004 4.004 15 C -0.502 4.502 16 H 0.046 0.954 17 C 0.001 3.999 18 N -0.955 5.955 19 Si 0.939 3.061 20 H -0.274 1.274 21 H -0.288 1.288 22 H -0.248 1.248 23 H 0.101 0.899 24 H 0.098 0.902 25 H 0.117 0.883 26 H 0.260 0.740 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.036 0.964 30 H 0.057 0.943 31 H 0.350 0.650 32 H 0.031 0.969 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.027 0.973 36 H 0.033 0.967 37 H 0.046 0.954 38 H 0.035 0.965 39 H 0.072 0.928 40 H 0.014 0.986 41 H 0.008 0.992 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.713 24.140 11.783 26.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.163 5.163 3 C -0.129 4.129 4 N -0.192 5.192 5 N -0.184 5.184 6 C -0.090 4.090 7 C -0.063 4.063 8 C -0.056 4.056 9 N -0.316 5.316 10 C -0.048 4.048 11 C -0.050 4.050 12 C -0.168 4.168 13 C -0.181 4.181 14 C -0.042 4.042 15 C -0.540 4.540 16 H 0.064 0.936 17 C -0.195 4.195 18 N -0.597 5.597 19 Si 0.764 3.236 20 H -0.199 1.199 21 H -0.214 1.214 22 H -0.172 1.172 23 H 0.120 0.880 24 H 0.116 0.884 25 H 0.136 0.864 26 H 0.276 0.724 27 H 0.118 0.882 28 H 0.130 0.870 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.171 0.829 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.090 0.910 40 H 0.033 0.967 41 H 0.026 0.974 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.637 23.793 11.764 26.550 hybrid contribution -1.934 0.118 -1.378 2.378 sum -2.572 23.911 10.386 26.196 Atomic orbital electron populations 1.22534 0.72379 1.07049 1.05960 1.46484 1.10832 1.05720 1.53295 1.27227 0.86305 0.96648 1.02729 1.74147 1.20940 1.03467 1.20696 1.74185 1.19522 1.03924 1.20781 1.25064 0.87022 0.93466 1.03423 1.19976 1.04250 0.84038 0.97995 1.21731 1.00220 0.88344 0.95307 1.60335 1.39579 1.17603 1.14056 1.21840 0.99567 0.94166 0.89218 1.20361 0.95850 0.93483 0.95268 1.21533 0.96992 0.98344 0.99940 1.21693 0.95794 1.01120 0.99495 1.19614 0.95480 0.94632 0.94506 1.21443 1.43290 0.96193 0.93095 0.93570 1.25910 0.95150 0.95333 1.03096 1.70063 1.50127 1.11180 1.28330 0.85820 0.78182 0.80115 0.79465 1.19922 1.21422 1.17204 0.88018 0.88351 0.86422 0.72397 0.88185 0.86981 0.94579 0.92467 0.82898 0.95056 0.92257 0.91136 0.95350 0.94767 0.93450 0.94627 0.90961 0.96732 0.97402 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.16 10.89 127.77 1.39 1.56 16 2 N -0.47 -6.20 3.15 -542.07 -1.71 -7.91 16 3 C 0.16 2.43 12.74 180.11 2.30 4.72 16 4 N -0.35 -9.30 12.21 -59.99 -0.73 -10.03 16 5 N -0.34 -9.81 12.21 -50.16 -0.61 -10.42 16 6 C 0.18 3.60 7.28 137.98 1.01 4.60 16 7 C -0.02 -0.36 5.65 29.85 0.17 -0.19 16 8 C 0.07 1.42 5.67 86.31 0.49 1.90 16 9 N -0.68 -15.04 5.71 -513.90 -2.94 -17.98 16 10 C 0.08 2.32 4.65 86.31 0.40 2.72 16 11 C -0.05 -1.76 0.60 -52.18 -0.03 -1.79 16 12 C -0.11 -4.09 8.07 71.98 0.58 -3.51 16 13 C -0.12 -4.07 7.89 71.98 0.57 -3.50 16 14 C 0.00 -0.20 3.11 29.85 0.09 -0.11 16 15 C -0.50 -27.89 8.20 25.60 0.21 -27.68 16 16 H 0.05 2.80 5.92 -2.91 -0.02 2.79 16 17 C 0.00 0.04 5.47 84.65 0.46 0.51 16 18 N -0.95 -59.87 13.96 21.45 0.30 -59.57 16 19 Si 0.94 44.55 27.47 68.60 1.88 46.43 16 20 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 21 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 23 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16 24 H 0.10 0.20 7.81 -2.39 -0.02 0.18 16 25 H 0.12 -0.22 8.14 -2.38 -0.02 -0.24 16 26 H 0.26 1.12 8.06 -2.91 -0.02 1.10 16 27 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.11 1.05 7.85 -2.38 -0.02 1.03 16 29 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.35 6.45 6.77 -89.69 -0.61 5.84 16 32 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 34 H 0.07 2.23 7.60 -2.39 -0.02 2.21 16 35 H 0.03 1.20 6.62 -2.38 -0.02 1.18 16 36 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.03 1.41 6.62 -2.38 -0.02 1.40 16 39 H 0.07 1.83 6.57 -2.39 -0.02 1.81 16 40 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 41 H 0.01 0.35 7.57 -2.39 -0.02 0.33 16 42 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -77.46 335.87 4.16 -73.30 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: 0.33 Total: 6.94 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: 7.63 Total: -20.77 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -5.69 Total: -105.91 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.43 kcal Total: -77.46 4.16 -73.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229695754.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.671 kcal (2) G-P(sol) polarization free energy of solvation -77.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds