Wall clock time and date at job start Mon Mar 30 2020 04:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47320 * 2 1 4 4 C 1.53001 * 109.47548 * 240.00055 * 2 1 3 5 5 C 1.50703 * 109.47049 * 59.99772 * 4 2 1 6 6 H 1.08003 * 119.99997 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99870 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00113 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99869 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47017 * 89.99950 * 9 7 5 11 11 H 1.48498 * 109.47157 * 210.00227 * 9 7 5 12 12 H 1.48501 * 109.47250 * 330.00162 * 9 7 5 13 13 C 1.52998 * 109.46942 * 119.99998 * 2 1 3 14 14 N 1.46906 * 109.47168 * 300.00019 * 13 2 1 15 15 C 1.46906 * 110.99961 * 180.02562 * 14 13 2 16 16 C 1.52996 * 109.46881 * 179.97438 * 15 14 13 17 17 C 1.52995 * 109.46921 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.47238 * 180.02562 * 17 16 15 19 19 N 1.30520 * 126.33971 * 305.02457 * 18 17 16 20 20 N 1.28601 * 109.67051 * 179.97438 * 19 18 17 21 21 C 1.30523 * 109.66884 * 0.02562 * 20 19 18 22 22 N 1.35489 * 107.31147 * 359.77220 * 21 20 19 23 23 H 0.96995 * 126.98343 * 180.22691 * 22 21 20 24 24 H 1.08996 * 109.47003 * 300.00125 * 1 2 3 25 25 H 1.09002 * 109.46596 * 59.99839 * 1 2 3 26 26 H 1.08997 * 109.47036 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47234 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.46807 * 300.00087 * 3 2 1 29 29 H 1.09006 * 109.46633 * 59.99457 * 3 2 1 30 30 H 1.08989 * 109.47343 * 180.02562 * 4 2 1 31 31 H 1.09007 * 109.46752 * 300.00558 * 4 2 1 32 32 H 0.96998 * 120.00017 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47025 * 180.02562 * 13 2 1 34 34 H 1.08997 * 109.47218 * 60.00156 * 13 2 1 35 35 H 1.00892 * 110.99747 * 56.04751 * 14 13 2 36 36 H 1.09002 * 109.47132 * 60.00056 * 15 14 13 37 37 H 1.09001 * 109.46942 * 300.00198 * 15 14 13 38 38 H 1.09002 * 109.47118 * 60.00138 * 16 15 14 39 39 H 1.08998 * 109.47074 * 299.99902 * 16 15 14 40 40 H 1.08997 * 109.47344 * 59.99907 * 17 16 15 41 41 H 1.08998 * 109.47310 * 299.99934 * 17 16 15 42 42 H 1.08005 * 126.33964 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5378 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8705 -0.4822 -3.7320 8 7 2.6258 -1.5520 -3.8526 9 14 1.2484 0.3988 -5.2572 10 1 2.2273 1.4398 -5.6614 11 1 1.0827 -0.5803 -6.3614 12 1 -0.0593 1.0373 -4.9614 13 6 2.0399 -0.7212 1.2492 14 7 1.5502 -0.0287 2.4487 15 6 2.0217 -0.6945 3.6704 16 6 1.4932 0.0540 4.8956 17 6 1.9837 -0.6397 6.1679 18 6 1.4625 0.0972 7.3747 19 7 1.6191 1.3671 7.6328 20 7 1.0438 1.6568 8.7458 21 6 0.4947 0.5847 9.2486 22 7 0.7406 -0.4346 8.3906 23 1 0.4587 -1.3578 8.4851 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1300 -0.7216 -1.2490 31 1 1.6767 -1.7489 -1.2492 32 1 2.8602 -1.8834 -4.7336 33 1 3.1300 -0.7209 1.2495 34 1 1.6766 -1.7489 1.2492 35 1 0.5438 0.0413 2.4401 36 1 3.1116 -0.6940 3.6870 37 1 1.6587 -1.7222 3.6873 38 1 0.4033 0.0539 4.8792 39 1 1.8567 1.0815 4.8783 40 1 3.0735 -0.6400 6.1845 41 1 1.6198 -1.6671 6.1849 42 1 -0.0573 0.5227 10.1749 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229696518.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:00 Heat of formation + Delta-G solvation = 47.967306 kcal Electronic energy + Delta-G solvation = -19596.840554 eV Core-core repulsion = 16612.228306 eV Total energy + Delta-G solvation = -2984.612248 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.40945 -37.82425 -35.82841 -34.13547 -33.28883 -32.06248 -30.00585 -27.13029 -26.41856 -26.26541 -24.46860 -23.12168 -22.45306 -21.74331 -21.10679 -18.62595 -17.81562 -16.32382 -16.23717 -15.87755 -15.57845 -14.96134 -14.50789 -14.36885 -14.07265 -13.70451 -13.03571 -12.74443 -12.38581 -12.06433 -11.94727 -11.91621 -11.82431 -11.36349 -11.16505 -11.07575 -10.92886 -10.80010 -10.73275 -10.62640 -10.46183 -10.23300 -10.09779 -9.65303 -9.50993 -8.99034 -8.80695 -8.29890 -8.07205 -5.94555 -3.94430 1.46992 2.41105 2.59098 3.34998 3.41377 3.44268 3.95257 4.27299 4.45429 4.50562 4.60555 4.90807 5.03364 5.16163 5.24186 5.36596 5.41300 5.42467 5.61324 5.72992 5.76736 5.79646 5.99509 6.05317 6.18322 6.28619 6.36795 6.53668 6.68557 6.70517 6.82190 6.86722 7.23858 7.25666 7.30173 7.42754 7.68654 7.73285 7.87854 8.05985 8.42131 8.50624 9.10973 9.68284 11.17147 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.056966 B = 0.002626 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.403037 B =10658.077067 C =10836.980808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.059 4.059 3 C -0.117 4.117 4 C 0.033 3.967 5 C -0.506 4.506 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.071 3.929 14 N -0.687 5.687 15 C 0.059 3.941 16 C -0.109 4.109 17 C -0.032 4.032 18 C 0.186 3.814 19 N -0.287 5.287 20 N -0.297 5.297 21 C 0.146 3.854 22 N -0.585 5.585 23 H 0.428 0.572 24 H 0.033 0.967 25 H 0.064 0.936 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.054 0.946 29 H 0.043 0.957 30 H 0.015 0.985 31 H 0.012 0.988 32 H 0.258 0.742 33 H 0.066 0.934 34 H 0.022 0.978 35 H 0.338 0.662 36 H 0.072 0.928 37 H 0.024 0.976 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.397 -2.293 23.924 24.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.059 4.059 3 C -0.174 4.174 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.077 0.923 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 C -0.058 4.058 14 N -0.318 5.318 15 C -0.071 4.071 16 C -0.148 4.148 17 C -0.072 4.072 18 C -0.083 4.083 19 N -0.128 5.128 20 N -0.136 5.136 21 C -0.143 4.143 22 N -0.198 5.198 23 H 0.268 0.732 24 H 0.052 0.948 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.033 0.967 31 H 0.030 0.970 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.040 0.960 35 H 0.157 0.843 36 H 0.091 0.909 37 H 0.042 0.958 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.099 0.901 42 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -3.333 -0.324 23.640 23.876 hybrid contribution -1.482 -2.360 -0.562 2.843 sum -4.815 -2.684 23.079 23.728 Atomic orbital electron populations 1.21771 0.96152 1.00270 1.00451 1.20629 0.94682 0.96194 0.94395 1.21605 0.99801 0.95760 1.00218 1.19130 0.96132 0.94949 0.90227 1.21244 1.30725 1.11821 0.90606 0.92284 1.25020 0.95459 0.95119 0.99065 1.69966 1.37416 1.23188 1.23253 0.86661 0.79241 0.79419 0.83073 1.20761 1.21431 1.19955 1.22109 0.99809 0.94552 0.89337 1.60522 1.16297 1.53837 1.01186 1.21915 1.00674 0.94763 0.89727 1.21498 1.00681 1.01393 0.91244 1.20065 1.01972 0.97302 0.87910 1.25076 0.97465 0.92374 0.93402 1.74310 1.19050 1.10250 1.09227 1.74294 1.11154 1.23707 1.04490 1.26510 1.04374 0.84248 0.99130 1.44193 1.43004 1.13581 1.19010 0.73218 0.94794 0.91711 0.94189 0.94152 0.92728 0.93801 0.96663 0.96964 0.93197 0.91537 0.95973 0.84345 0.90922 0.95806 0.92140 0.89397 0.88324 0.90117 0.76307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 7.89 37.16 0.29 -2.11 16 2 C -0.06 -1.17 0.60 -154.51 -0.09 -1.26 16 3 C -0.12 -2.29 8.06 37.16 0.30 -1.99 16 4 C 0.03 0.84 4.04 -27.88 -0.11 0.72 16 5 C -0.51 -13.88 7.65 -34.44 -0.26 -14.14 16 6 H 0.06 1.58 5.68 -52.48 -0.30 1.28 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 13 C 0.07 1.20 4.65 -3.82 -0.02 1.19 16 14 N -0.69 -9.73 5.71 -113.77 -0.65 -10.38 16 15 C 0.06 0.65 5.69 -3.82 -0.02 0.63 16 16 C -0.11 -1.05 5.44 -26.74 -0.15 -1.19 16 17 C -0.03 -0.23 5.84 -27.88 -0.16 -0.40 16 18 C 0.19 1.70 7.56 -154.99 -1.17 0.53 16 19 N -0.29 -3.75 12.19 32.80 0.40 -3.35 16 20 N -0.30 -3.62 12.21 29.69 0.36 -3.26 16 21 C 0.15 1.04 13.19 -89.95 -1.19 -0.14 16 22 N -0.58 -3.43 6.20 -11.36 -0.07 -3.50 16 23 H 0.43 0.79 8.96 -40.82 -0.37 0.42 16 24 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 25 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 29 H 0.04 0.78 7.60 -51.93 -0.39 0.39 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.01 0.33 8.14 -51.92 -0.42 -0.10 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.34 4.61 6.77 -39.30 -0.27 4.35 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.22 0.50 8.06 -52.48 -0.42 0.08 16 LS Contribution 339.42 15.07 5.12 5.12 Total: -1.00 -34.06 339.42 -8.79 -42.85 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -6.98 Total: -1.23 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -2.68 Total: -16.74 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.78 Total: -46.67 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.06 -8.79 -42.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229696518.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.821 kcal (2) G-P(sol) polarization free energy of solvation -34.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds