Wall clock time and date at job start Mon Mar 30 2020 04:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47320 * 2 1 4 4 C 1.53001 * 109.47548 * 240.00055 * 2 1 3 5 5 C 1.50703 * 109.47049 * 59.99772 * 4 2 1 6 6 H 1.08003 * 119.99997 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99870 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00113 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99869 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47017 * 89.99950 * 9 7 5 11 11 H 1.48498 * 109.47157 * 210.00227 * 9 7 5 12 12 H 1.48501 * 109.47250 * 330.00162 * 9 7 5 13 13 C 1.52998 * 109.46942 * 119.99998 * 2 1 3 14 14 N 1.46906 * 109.47168 * 300.00019 * 13 2 1 15 15 C 1.46906 * 110.99961 * 180.02562 * 14 13 2 16 16 C 1.52996 * 109.46881 * 179.97438 * 15 14 13 17 17 C 1.52995 * 109.46921 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.47238 * 180.02562 * 17 16 15 19 19 N 1.30520 * 126.33971 * 305.02457 * 18 17 16 20 20 N 1.28601 * 109.67051 * 179.97438 * 19 18 17 21 21 C 1.30523 * 109.66884 * 0.02562 * 20 19 18 22 22 N 1.35489 * 107.31147 * 359.77220 * 21 20 19 23 23 H 0.96995 * 126.98343 * 180.22691 * 22 21 20 24 24 H 1.08996 * 109.47003 * 300.00125 * 1 2 3 25 25 H 1.09002 * 109.46596 * 59.99839 * 1 2 3 26 26 H 1.08997 * 109.47036 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47234 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.46807 * 300.00087 * 3 2 1 29 29 H 1.09006 * 109.46633 * 59.99457 * 3 2 1 30 30 H 1.08989 * 109.47343 * 180.02562 * 4 2 1 31 31 H 1.09007 * 109.46752 * 300.00558 * 4 2 1 32 32 H 0.96998 * 120.00017 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47025 * 180.02562 * 13 2 1 34 34 H 1.08997 * 109.47218 * 60.00156 * 13 2 1 35 35 H 1.00892 * 110.99747 * 56.04751 * 14 13 2 36 36 H 1.09002 * 109.47132 * 60.00056 * 15 14 13 37 37 H 1.09001 * 109.46942 * 300.00198 * 15 14 13 38 38 H 1.09002 * 109.47118 * 60.00138 * 16 15 14 39 39 H 1.08998 * 109.47074 * 299.99902 * 16 15 14 40 40 H 1.08997 * 109.47344 * 59.99907 * 17 16 15 41 41 H 1.08998 * 109.47310 * 299.99934 * 17 16 15 42 42 H 1.08005 * 126.33964 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5378 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8705 -0.4822 -3.7320 8 7 2.6258 -1.5520 -3.8526 9 14 1.2484 0.3988 -5.2572 10 1 2.2273 1.4398 -5.6614 11 1 1.0827 -0.5803 -6.3614 12 1 -0.0593 1.0373 -4.9614 13 6 2.0399 -0.7212 1.2492 14 7 1.5502 -0.0287 2.4487 15 6 2.0217 -0.6945 3.6704 16 6 1.4932 0.0540 4.8956 17 6 1.9837 -0.6397 6.1679 18 6 1.4625 0.0972 7.3747 19 7 1.6191 1.3671 7.6328 20 7 1.0438 1.6568 8.7458 21 6 0.4947 0.5847 9.2486 22 7 0.7406 -0.4346 8.3906 23 1 0.4587 -1.3578 8.4851 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1300 -0.7216 -1.2490 31 1 1.6767 -1.7489 -1.2492 32 1 2.8602 -1.8834 -4.7336 33 1 3.1300 -0.7209 1.2495 34 1 1.6766 -1.7489 1.2492 35 1 0.5438 0.0413 2.4401 36 1 3.1116 -0.6940 3.6870 37 1 1.6587 -1.7222 3.6873 38 1 0.4033 0.0539 4.8792 39 1 1.8567 1.0815 4.8783 40 1 3.0735 -0.6400 6.1845 41 1 1.6198 -1.6671 6.1849 42 1 -0.0573 0.5227 10.1749 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229696518.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:59 Heat of formation + Delta-G solvation = 25.986590 kcal Electronic energy + Delta-G solvation = -19597.793709 eV Core-core repulsion = 16612.228306 eV Total energy + Delta-G solvation = -2985.565403 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.03510 -39.25230 -36.91087 -35.00001 -34.54629 -33.64242 -30.89137 -28.98378 -27.87856 -27.53659 -25.91825 -24.05044 -23.70451 -22.72841 -21.77619 -19.45332 -19.17775 -18.31739 -17.02155 -16.87524 -16.62637 -16.22347 -15.71928 -15.47734 -15.26739 -14.92986 -14.49942 -14.27575 -13.88524 -13.51836 -13.26635 -12.94296 -12.81259 -12.63652 -12.59380 -12.46533 -12.30710 -12.20554 -12.10973 -11.86043 -11.77057 -11.73534 -11.35258 -11.28153 -10.84221 -10.71651 -10.49365 -10.19416 -9.22109 -8.13121 -6.19721 0.91287 1.41396 1.42066 1.52431 1.90594 1.95743 2.44511 3.20727 3.27099 3.45830 3.96569 4.03725 4.14102 4.22852 4.25197 4.38328 4.45473 4.49838 4.52395 4.69630 4.76432 4.79314 4.84827 4.87671 4.99103 5.09903 5.16453 5.21824 5.23771 5.26782 5.42002 5.53418 5.55876 5.60208 5.67995 5.89317 5.94494 6.16538 6.33765 6.39478 6.59436 6.95352 7.47366 7.77193 8.99162 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.056966 B = 0.002626 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.403037 B =10658.077067 C =10836.980808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.056 4.056 3 C -0.108 4.108 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.065 0.935 7 C -0.005 4.005 8 N -0.937 5.937 9 Si 0.956 3.044 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.263 1.263 13 C 0.084 3.916 14 N -0.690 5.690 15 C 0.061 3.939 16 C -0.097 4.097 17 C -0.026 4.026 18 C 0.184 3.816 19 N -0.343 5.343 20 N -0.357 5.357 21 C 0.168 3.832 22 N -0.569 5.569 23 H 0.449 0.551 24 H 0.066 0.934 25 H 0.044 0.956 26 H 0.038 0.962 27 H 0.029 0.971 28 H 0.037 0.963 29 H 0.065 0.935 30 H -0.016 1.016 31 H -0.014 1.014 32 H 0.259 0.741 33 H 0.056 0.944 34 H 0.021 0.979 35 H 0.343 0.657 36 H 0.071 0.929 37 H 0.040 0.960 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.102 0.898 41 H 0.114 0.886 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.902 -2.666 25.526 26.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.057 4.057 3 C -0.165 4.165 4 C 0.001 3.999 5 C -0.551 4.551 6 H 0.083 0.917 7 C -0.202 4.202 8 N -0.579 5.579 9 Si 0.781 3.219 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.187 1.187 13 C -0.046 4.046 14 N -0.323 5.323 15 C -0.068 4.068 16 C -0.136 4.136 17 C -0.066 4.066 18 C -0.087 4.087 19 N -0.183 5.183 20 N -0.196 5.196 21 C -0.122 4.122 22 N -0.183 5.183 23 H 0.293 0.707 24 H 0.085 0.915 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.003 0.997 31 H 0.004 0.996 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.039 0.961 35 H 0.162 0.838 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.120 0.880 41 H 0.132 0.868 42 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -4.852 -0.703 25.264 25.735 hybrid contribution -1.020 -2.291 -0.971 2.689 sum -5.873 -2.994 24.293 25.171 Atomic orbital electron populations 1.21680 0.94712 1.00449 1.01088 1.20502 0.95799 0.95963 0.93392 1.21512 0.99111 0.95497 1.00396 1.19019 0.94089 0.94072 0.92682 1.21621 1.30204 1.11807 0.91506 0.91741 1.25915 0.95785 0.95922 1.02544 1.70102 1.38916 1.24865 1.24001 0.85585 0.79078 0.78228 0.79003 1.20225 1.21181 1.18735 1.21794 0.99117 0.94256 0.89399 1.60442 1.16679 1.53996 1.01163 1.21961 1.00676 0.95528 0.88672 1.21315 1.00569 0.99975 0.91782 1.20081 1.02231 0.98392 0.85908 1.25264 0.97364 0.91738 0.94306 1.74193 1.21055 1.12620 1.10458 1.74179 1.13651 1.26451 1.05346 1.27329 1.02137 0.83146 0.99614 1.44111 1.41923 1.14512 1.17802 0.70749 0.91503 0.93641 0.94248 0.95145 0.94380 0.91584 0.99745 0.99560 0.93178 0.92536 0.96082 0.83759 0.91059 0.94138 0.91996 0.92007 0.87982 0.86751 0.71895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.39 7.89 71.98 0.57 -3.82 16 2 C -0.06 -2.23 0.60 -52.18 -0.03 -2.26 16 3 C -0.11 -4.20 8.06 71.98 0.58 -3.62 16 4 C 0.04 2.02 4.04 29.85 0.12 2.14 16 5 C -0.51 -28.59 7.65 25.60 0.20 -28.39 16 6 H 0.06 3.46 5.68 -2.91 -0.02 3.44 16 7 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 8 N -0.94 -57.45 13.29 21.45 0.28 -57.16 16 9 Si 0.96 44.76 29.54 68.60 2.03 46.79 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 13 C 0.08 2.79 4.65 86.30 0.40 3.19 16 14 N -0.69 -18.32 5.71 -513.87 -2.94 -21.26 16 15 C 0.06 1.21 5.69 86.30 0.49 1.70 16 16 C -0.10 -1.69 5.44 30.59 0.17 -1.53 16 17 C -0.03 -0.31 5.84 29.85 0.17 -0.14 16 18 C 0.18 3.06 7.56 137.98 1.04 4.11 16 19 N -0.34 -8.88 12.19 -50.15 -0.61 -9.49 16 20 N -0.36 -8.54 12.21 -59.99 -0.73 -9.27 16 21 C 0.17 1.99 13.19 180.11 2.37 4.36 16 22 N -0.57 -5.05 6.20 -189.85 -1.18 -6.23 16 23 H 0.45 -0.04 8.96 -92.71 -0.83 -0.87 16 24 H 0.07 1.95 6.57 -2.39 -0.02 1.94 16 25 H 0.04 1.80 6.62 -2.39 -0.02 1.78 16 26 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.04 1.58 6.62 -2.38 -0.02 1.56 16 29 H 0.07 2.26 7.60 -2.38 -0.02 2.24 16 30 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 31 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 32 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 35 H 0.34 8.49 6.77 -89.70 -0.61 7.88 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.27 0.20 8.06 -2.91 -0.02 0.18 16 Total: -1.00 -76.91 339.42 2.98 -73.94 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -0.43 Total: 6.77 kcal Atomic # 6 Polarization: -30.63 SS G_CDS: 6.55 Total: -24.08 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -5.17 Total: -103.41 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -76.91 2.98 -73.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229696518.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.922 kcal (2) G-P(sol) polarization free energy of solvation -76.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds