Wall clock time and date at job start Mon Mar 30 2020 04:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.46964 * 2 1 4 4 C 1.46898 * 111.00378 * 287.85717 * 3 2 1 5 5 C 1.50705 * 109.46878 * 296.45816 * 4 3 2 6 6 H 1.07995 * 120.00105 * 4.38598 * 5 4 3 7 7 C 1.37876 * 119.99886 * 184.37590 * 5 4 3 8 8 N 1.31517 * 120.00174 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00192 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46916 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47147 * 119.99879 * 9 7 5 12 12 H 1.48493 * 109.47355 * 240.00545 * 9 7 5 13 13 C 1.46904 * 110.99962 * 163.90021 * 3 2 1 14 14 H 1.09002 * 109.46619 * 58.39946 * 13 3 2 15 15 C 1.50701 * 109.47047 * 298.40047 * 13 3 2 16 16 C 1.39867 * 126.03930 * 319.68656 * 15 13 3 17 17 N 1.30837 * 108.20222 * 179.81959 * 16 15 13 18 18 N 1.40087 * 108.20243 * 0.44246 * 17 16 15 19 19 C 1.46497 * 126.03566 * 179.74002 * 18 17 16 20 20 C 1.34943 * 107.92759 * 359.71816 * 18 17 16 21 21 C 1.52998 * 109.47254 * 178.39398 * 13 3 2 22 22 H 1.09001 * 109.47606 * 300.00567 * 21 13 3 23 23 C 1.52997 * 109.47203 * 180.02562 * 21 13 3 24 24 N 1.46902 * 109.46641 * 60.00351 * 21 13 3 25 25 H 1.09005 * 109.47078 * 300.12248 * 1 2 3 26 26 H 1.08999 * 109.47230 * 180.12962 * 1 2 3 27 27 H 1.09000 * 109.47678 * 60.12431 * 1 2 3 28 28 H 1.09000 * 109.47555 * 120.00416 * 2 1 3 29 29 H 1.09001 * 109.46586 * 240.00598 * 2 1 3 30 30 H 1.08998 * 109.47534 * 56.45676 * 4 3 2 31 31 H 1.08996 * 109.47383 * 176.46063 * 4 3 2 32 32 H 0.96999 * 120.00206 * 180.02562 * 8 7 5 33 33 H 1.08000 * 125.89990 * 0.02562 * 16 15 13 34 34 H 1.09004 * 109.47252 * 269.97147 * 19 18 17 35 35 H 1.09002 * 109.47409 * 29.97470 * 19 18 17 36 36 H 1.09006 * 109.47180 * 149.97400 * 19 18 17 37 37 H 1.08006 * 126.12986 * 180.02562 * 20 18 17 38 38 H 1.09001 * 109.47210 * 62.50109 * 23 21 13 39 39 H 1.08997 * 109.47544 * 182.50742 * 23 21 13 40 40 H 1.09003 * 109.47363 * 302.50651 * 23 21 13 41 41 H 1.00892 * 111.00360 * 299.99598 * 24 21 13 42 42 H 1.00900 * 111.00359 * 63.95475 * 24 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7986 2.0216 -1.3053 5 6 2.6020 1.3016 -2.3577 6 1 3.1592 0.4137 -2.0982 7 6 2.6254 1.7765 -3.6519 8 7 1.9471 2.8581 -3.9679 9 14 3.6206 0.8839 -4.9565 10 1 4.2871 -0.2962 -4.3494 11 1 2.7179 0.4353 -6.0469 12 1 4.6476 1.8023 -5.5103 13 6 3.4374 1.4421 0.3803 14 1 4.0241 0.8395 -0.3131 15 6 3.6045 0.9048 1.7783 16 6 2.7471 1.1397 2.8582 17 7 3.2193 0.5052 3.9004 18 7 4.3994 -0.1461 3.5187 19 6 5.2501 -0.9660 4.3848 20 6 4.6138 0.1148 2.2122 21 6 3.9208 2.8929 0.3302 22 1 3.7999 3.2815 -0.6809 23 6 5.3976 2.9523 0.7257 24 7 3.1301 3.7049 1.2647 25 1 -0.3633 0.5158 0.8889 26 1 -0.3633 -1.0276 0.0023 27 1 -0.3634 0.5119 -0.8911 28 1 1.8934 -0.5139 0.8899 29 1 1.8932 -0.5138 -0.8901 30 1 0.7398 1.9718 -1.5593 31 1 2.1124 3.0643 -1.2588 32 1 1.9633 3.1919 -4.8784 33 1 1.8486 1.7383 2.8347 34 1 6.0046 -0.3354 4.8553 35 1 4.6385 -1.4367 5.1546 36 1 5.7403 -1.7360 3.7890 37 1 5.4423 -0.2433 1.6190 38 1 5.9894 2.3862 0.0064 39 1 5.7303 3.9902 0.7332 40 1 5.5253 2.5227 1.7193 41 1 2.1505 3.6819 1.0243 42 1 3.2758 3.4051 2.2171 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249822316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:17 Heat of formation + Delta-G solvation = 82.814902 kcal Electronic energy + Delta-G solvation = -21757.053782 eV Core-core repulsion = 18773.952639 eV Total energy + Delta-G solvation = -2983.101143 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.09211 -37.87767 -34.56235 -32.98268 -32.44550 -30.42878 -29.52027 -28.19932 -27.46762 -25.93527 -24.12169 -23.07613 -20.81926 -20.65429 -20.01501 -18.71255 -16.70930 -16.05445 -15.71276 -15.15324 -14.97396 -14.42846 -14.28990 -13.96245 -13.80030 -13.47645 -12.96531 -12.64667 -12.53016 -12.35239 -12.13976 -11.74717 -11.70037 -11.34103 -11.18155 -11.15020 -10.78242 -10.74491 -10.47790 -10.26911 -10.04015 -9.93453 -9.83765 -9.45830 -9.17046 -8.40664 -8.24454 -7.73742 -7.13436 -6.01499 -4.09864 2.10244 2.70345 3.13556 3.25641 3.34534 3.36410 4.40733 4.59281 4.91401 5.06828 5.09933 5.28337 5.29196 5.36000 5.43843 5.68316 5.88583 5.92015 5.98468 6.01388 6.12962 6.14951 6.16534 6.39551 6.40753 6.58343 6.60924 6.66949 6.85845 6.90806 6.98011 7.01118 7.20703 7.32154 7.57719 7.90501 7.93714 7.94884 8.13342 8.25837 8.32212 8.35001 9.00734 9.56534 11.03099 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.020832 B = 0.006310 C = 0.006086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.793390 B = 4436.455446 C = 4599.486359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.058 3.942 3 N -0.533 5.533 4 C 0.180 3.820 5 C -0.545 4.545 6 H 0.055 0.945 7 C 0.067 3.933 8 N -0.888 5.888 9 Si 0.884 3.116 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.134 3.866 14 H 0.050 0.950 15 C -0.203 4.203 16 C 0.069 3.931 17 N -0.309 5.309 18 N -0.384 5.384 19 C 0.107 3.893 20 C 0.043 3.957 21 C 0.100 3.900 22 H 0.099 0.901 23 C -0.140 4.140 24 N -0.837 5.837 25 H 0.048 0.952 26 H 0.040 0.960 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.041 0.959 30 H 0.030 0.970 31 H 0.042 0.958 32 H 0.261 0.739 33 H 0.180 0.820 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.166 0.834 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.348 0.652 42 H 0.325 0.675 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.400 -5.527 12.659 14.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.070 4.070 3 N -0.257 5.257 4 C 0.055 3.945 5 C -0.584 4.584 6 H 0.073 0.927 7 C -0.136 4.136 8 N -0.527 5.527 9 Si 0.712 3.288 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.210 1.210 13 C 0.022 3.978 14 H 0.067 0.933 15 C -0.214 4.214 16 C -0.117 4.117 17 N -0.130 5.130 18 N -0.168 5.168 19 C -0.035 4.035 20 C -0.102 4.102 21 C -0.013 4.013 22 H 0.117 0.883 23 C -0.198 4.198 24 N -0.367 5.367 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.197 0.803 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.183 0.817 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.162 0.838 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.442 -4.888 13.917 15.722 hybrid contribution 0.746 -1.868 -2.206 2.985 sum 6.188 -6.756 11.711 14.869 Atomic orbital electron populations 1.21681 0.96295 0.99735 1.01913 1.21828 0.94883 0.90838 0.99451 1.62448 1.14706 1.16075 1.32483 1.19880 0.96867 0.95186 0.82572 1.21721 1.30156 1.11760 0.94742 0.92719 1.24919 0.95402 0.94830 0.98433 1.69944 1.41297 1.22108 1.19307 0.86676 0.80196 0.79817 0.82124 1.20030 1.21085 1.20977 1.20466 0.91297 0.97189 0.88824 0.93252 1.20217 0.97259 1.05978 0.97988 1.23711 0.99732 0.98485 0.89753 1.77306 0.97623 1.14085 1.24005 1.48328 1.19897 1.40549 1.07990 1.21723 0.93329 0.93871 0.94603 1.22242 1.01249 1.00974 0.85741 1.21419 0.91978 0.89769 0.98093 0.88298 1.21779 0.96237 1.01305 1.00455 1.59114 1.14119 1.57979 1.05456 0.93265 0.94102 0.92192 0.93328 0.94095 0.95217 0.93994 0.92924 0.80272 0.91267 0.89740 0.89978 0.81687 0.92882 0.92650 0.93556 0.83826 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.96 37.16 0.37 -2.05 16 2 C 0.06 1.11 5.34 -3.83 -0.02 1.09 16 3 N -0.53 -10.36 3.62 -229.48 -0.83 -11.19 16 4 C 0.18 4.29 4.42 -4.97 -0.02 4.27 16 5 C -0.54 -14.15 7.46 -34.44 -0.26 -14.40 16 6 H 0.05 1.43 5.92 -52.49 -0.31 1.12 16 7 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 8 N -0.89 -25.30 13.29 55.43 0.74 -24.57 16 9 Si 0.88 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.13 2.42 1.40 -68.86 -0.10 2.32 16 14 H 0.05 1.01 6.76 -51.93 -0.35 0.66 16 15 C -0.20 -3.18 2.22 -105.05 -0.23 -3.41 16 16 C 0.07 1.08 9.54 -17.37 -0.17 0.91 16 17 N -0.31 -4.78 12.58 30.62 0.39 -4.40 16 18 N -0.38 -5.08 4.01 -68.16 -0.27 -5.36 16 19 C 0.11 0.90 11.47 59.85 0.69 1.59 16 20 C 0.04 0.60 10.61 -17.22 -0.18 0.42 16 21 C 0.10 1.79 2.69 -67.71 -0.18 1.61 16 22 H 0.10 2.16 6.30 -51.93 -0.33 1.83 16 23 C -0.14 -2.19 9.22 37.16 0.34 -1.85 16 24 N -0.84 -14.09 9.07 -4.67 -0.04 -14.13 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.16 6.71 -51.93 -0.35 0.81 16 28 H 0.05 0.89 6.46 -51.93 -0.34 0.56 16 29 H 0.04 0.88 6.34 -51.93 -0.33 0.55 16 30 H 0.03 0.77 6.59 -51.93 -0.34 0.43 16 31 H 0.04 1.08 6.06 -51.93 -0.31 0.76 16 32 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.18 2.69 8.01 -52.49 -0.42 2.27 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.17 1.93 8.06 -52.48 -0.42 1.50 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.05 0.69 6.56 -51.93 -0.34 0.35 16 41 H 0.35 6.12 8.21 -39.30 -0.32 5.79 16 42 H 0.33 5.13 6.74 -39.29 -0.26 4.87 16 LS Contribution 327.24 15.07 4.93 4.93 Total: -1.00 -28.72 327.24 -6.50 -35.22 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -6.53 Total: 11.36 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 0.14 Total: -7.79 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: -0.03 Total: -59.65 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.72 -6.50 -35.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249822316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.036 kcal (2) G-P(sol) polarization free energy of solvation -28.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds